RNA–Protein interactions for RNA: YMR301C

ATM1, Transcript of Mitochondrial inner membrane ATP-binding cassette (ABC) transporter, yeast

Gene ATM1, Length 2,073 nt, Biotype protein coding, Subcellular localisation Mitochondria, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATM1	YMR301C	PMA2	P19657	947 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	RBK1	P25332	333 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	DPB3	P27344	201 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	PDR3	P33200	976 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	RRP3	P38712	501 aa	Known RBP	4.76	□□□□□ -1.65
ATM1	YMR301C	OTU2	P38747	307 aa	Known RBP	4.76	□□□□□ -1.65
ATM1	YMR301C	PPE1	P38796	400 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	FLC2	P39719	783 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	SAW1	P39735	261 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	IRR1	P40541	1150 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	CIS3	P47001	227 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	ALY2	P47029	1046 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	VPS9	P54787	451 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	DIG1	Q03063	452 aa	Known RBP	4.76	□□□□□ -1.65
ATM1	YMR301C	TLG1	Q03322	224 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	YDR444W	Q04093	687 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	SHE9	Q04172	456 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	TPO1	Q07824	586 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	PGC1	Q08959	321 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	RKM5	Q12367	367 aa		4.76	□□□□□ -1.65
ATM1	YMR301C	NUM1	Q00402	2748 aa		4.75	□□□□□ -1.65
ATM1	YMR301C	RRP43	P25359	394 aa	Predicted RBP	4.75	□□□□□ -1.65
ATM1	YMR301C	AGP1	P25376	633 aa		4.75	□□□□□ -1.65
ATM1	YMR301C	BRF1	P29056	596 aa		4.75	□□□□□ -1.65
ATM1	YMR301C	BLI1	P35727	113 aa		4.75	□□□□□ -1.65
ATM1	YMR301C	YKL151C	P36059	337 aa		4.75	□□□□□ -1.65
ATM1	YMR301C	YIL108W	P40483	696 aa	Known RBP	4.75	□□□□□ -1.65
ATM1	YMR301C	RFX1	P48743	811 aa		4.75	□□□□□ -1.65
ATM1	YMR301C	MON1	P53129	644 aa		4.75	□□□□□ -1.65
ATM1	YMR301C	NRM1	P53718	249 aa		4.75	□□□□□ -1.65
ATM1	YMR301C	THI7	Q05998	598 aa		4.75	□□□□□ -1.65
ATM1	YMR301C	YLR001C	Q07895	862 aa		4.75	□□□□□ -1.65
ATM1	YMR301C	TRE2	Q08693	809 aa		4.75	□□□□□ -1.65
ATM1	YMR301C	RPN8	Q08723	338 aa	Known RBP	4.75	□□□□□ -1.65
ATM1	YMR301C	RAD10	P06838	210 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	ERR1	P0CX10	437 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	ERR2	P0CX11	437 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	ROX1	P25042	368 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	ARE1	P25628	610 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	KNS1	P32350	737 aa	Predicted RBP	4.74	□□□□□ -1.65
ATM1	YMR301C	YBL055C	P34220	418 aa	Predicted RBP	4.74	□□□□□ -1.65
ATM1	YMR301C	PCA1	P38360	1216 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	AIM46	P38885	310 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	PIC2	P40035	300 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	MKT1	P40850	830 aa	Known RBP	4.74	□□□□□ -1.65
ATM1	YMR301C	ROK1	P45818	564 aa	Predicted RBP	4.74	□□□□□ -1.65
ATM1	YMR301C	SET2	P46995	733 aa	Known RBP	4.74	□□□□□ -1.65
ATM1	YMR301C	SPC105	P53148	917 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	ENT5	Q03769	411 aa	Known RBP	4.74	□□□□□ -1.65
ATM1	YMR301C	YDR131C	Q03899	556 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	PPN1	Q04119	674 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	UTP5	Q04177	643 aa	Known RBP	4.74	□□□□□ -1.65
ATM1	YMR301C	YML096W	Q04489	525 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	ARP9	Q05123	467 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.74	□□□□□ -1.65	not detected
ATM1	YMR301C	SRO7	Q12038	1033 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	POL2	P21951	2222 aa	Known RBP	4.74	□□□□□ -1.65
ATM1	YMR301C	POL30	P15873	258 aa	Known RBP	4.74	□□□□□ -1.65
ATM1	YMR301C	SBA1	P28707	216 aa	Known RBP	4.74	□□□□□ -1.65
ATM1	YMR301C	MLF3	P32047	452 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	KAP122	P32767	1081 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	MRT4	P33201	236 aa	Known RBP	4.74	□□□□□ -1.65
ATM1	YMR301C	YBR238C	P38330	731 aa	Known RBP	4.74	□□□□□ -1.65
ATM1	YMR301C	SPC72	P39723	622 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	GND2	P53319	492 aa		4.74	□□□□□ -1.65
ATM1	YMR301C	SLY1	P22213	666 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	RAD57	P25301	460 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	YHL041W	P38730	149 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	UME6	P39001	836 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	ELO3	P40319	345 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	IST3	P40565	148 aa	Predicted RBP	4.73	□□□□□ -1.65
ATM1	YMR301C	HLJ1	P48353	224 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	STR3	P53101	465 aa	Known RBP	4.73	□□□□□ -1.65
ATM1	YMR301C	TEP1	P53916	434 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	NGL3	Q03210	505 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	SOV1	Q04748	898 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	YLR456W	Q06199	204 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	THI73	Q07904	523 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	NTG2	Q08214	380 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	DAS2	Q12084	232 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	PRP9	P19736	530 aa	Known RBP	4.73	□□□□□ -1.65
ATM1	YMR301C	SFL1	P20134	766 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	DCC1	P25559	380 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	MPE1	P35728	441 aa	Known RBP	4.73	□□□□□ -1.65
ATM1	YMR301C	ARG2	P40360	574 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	TES1	P41903	349 aa	Known RBP	4.73	□□□□□ -1.65
ATM1	YMR301C	SIP4	P46954	829 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	CTK3	P46963	296 aa	Predicted RBP	4.73	□□□□□ -1.65
ATM1	YMR301C	UGO1	Q03327	502 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	YDL121C	Q07541	149 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	LDB18	Q07887	179 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	AAD15	Q08361	143 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	AI5_ALPHA	Q9ZZX1	630 aa		4.73	□□□□□ -1.65
ATM1	YMR301C	TUB3	P09734	445 aa	Known RBP	4.72	□□□□□ -1.65
ATM1	YMR301C	SBP1	P10080	294 aa	Known RBP	4.72	□□□□□ -1.65
ATM1	YMR301C	PMS1	P14242	873 aa		4.72	□□□□□ -1.65
ATM1	YMR301C	SEC23	P15303	768 aa	Known RBP	4.72	□□□□□ -1.65
ATM1	YMR301C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
ATM1	YMR301C	CLN1	P20437	546 aa		4.72	□□□□□ -1.65
ATM1	YMR301C	HXT1	P32465	570 aa		4.72	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 95.7 ms