RNA–Protein interactions for RNA: YDR392W

SPT3, Transcript of Subunit of the SAGA and SAGA-like transcriptional regulatory complexes, yeast

Gene SPT3, Length 1,014 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPT3	YDR392W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.96	□□□□□ -1.62	RIP-Chip
SPT3	YDR392W	BNI5	P53890	448 aa	Known RBP	4.96	□□□□□ -1.62
SPT3	YDR392W	REH1	Q06709	432 aa		4.96	□□□□□ -1.62
SPT3	YDR392W	YPR071W	Q12346	211 aa		4.96	□□□□□ -1.62
SPT3	YDR392W	ADE8	P04161	214 aa		4.95	□□□□□ -1.62
SPT3	YDR392W	RED1	P14291	827 aa		4.95	□□□□□ -1.62
SPT3	YDR392W	YCR006C	P25350	157 aa		4.95	□□□□□ -1.62
SPT3	YDR392W	SAS3	P34218	831 aa		4.95	□□□□□ -1.62
SPT3	YDR392W	EBP2	P36049	427 aa	Known RBP	4.95	□□□□□ -1.62
SPT3	YDR392W	VHC1	P38329	1120 aa		4.95	□□□□□ -1.62
SPT3	YDR392W	TSL1	P38427	1098 aa	Known RBP	4.95	□□□□□ -1.62
SPT3	YDR392W	FHL1	P39521	936 aa		4.95	□□□□□ -1.62
SPT3	YDR392W	SER3	P40054	469 aa		4.95	□□□□□ -1.62
SPT3	YDR392W	THI6	P41835	540 aa		4.95	□□□□□ -1.62
SPT3	YDR392W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	not detected
SPT3	YDR392W	GUF1	P46943	645 aa		4.95	□□□□□ -1.62
SPT3	YDR392W	TAD1	P53065	400 aa		4.95	□□□□□ -1.62
SPT3	YDR392W	NCS2	P53923	493 aa	Predicted RBP	4.95	□□□□□ -1.62
SPT3	YDR392W	YET2	Q04210	160 aa		4.95	□□□□□ -1.62
SPT3	YDR392W	RPC11	Q04307	110 aa	Predicted RBP	4.95	□□□□□ -1.62
SPT3	YDR392W	GAD1	Q04792	585 aa		4.95	□□□□□ -1.62
SPT3	YDR392W	FAL1	Q12099	399 aa	Known RBP	4.95	□□□□□ -1.62
SPT3	YDR392W	YOR111W	Q99210	232 aa		4.95	□□□□□ -1.62
SPT3	YDR392W	PYC1	P11154	1178 aa	Known RBP	4.94	□□□□□ -1.62
SPT3	YDR392W	RNR3	P21672	869 aa	Known RBP	4.94	□□□□□ -1.62
SPT3	YDR392W	NTH1	P32356	751 aa		4.94	□□□□□ -1.62
SPT3	YDR392W	LHS1	P36016	881 aa		4.94	□□□□□ -1.62
SPT3	YDR392W	GAA1	P39012	614 aa		4.94	□□□□□ -1.62
SPT3	YDR392W	ATF1	P40353	525 aa		4.94	□□□□□ -1.62
SPT3	YDR392W	YKE2	P52553	114 aa		4.94	□□□□□ -1.62
SPT3	YDR392W	VPS73	P53142	486 aa	Known RBP	4.94	□□□□□ -1.62
SPT3	YDR392W	SHE9	Q04172	456 aa		4.94	□□□□□ -1.62
SPT3	YDR392W	NDD1	Q08887	554 aa		4.94	□□□□□ -1.62
SPT3	YDR392W	YOR342C	Q12182	319 aa		4.94	□□□□□ -1.62
SPT3	YDR392W	URA4	P20051	364 aa		4.93	□□□□□ -1.62
SPT3	YDR392W	PPH21	P23594	369 aa		4.93	□□□□□ -1.62
SPT3	YDR392W	ERG5	P54781	538 aa		4.93	□□□□□ -1.62
SPT3	YDR392W	SLU7	Q02775	382 aa	Known RBP	4.93	□□□□□ -1.62
SPT3	YDR392W	SPN1	Q06505	410 aa	Predicted RBP	4.93	□□□□□ -1.62
SPT3	YDR392W	RPC53	P25441	422 aa		4.92	□□□□□ -1.62
SPT3	YDR392W	NIP1	P32497	812 aa	Known RBP	4.92	□□□□□ -1.62
SPT3	YDR392W	TYE7	P33122	291 aa	Predicted RBP	4.92	□□□□□ -1.62
SPT3	YDR392W	VBA5	P36172	582 aa		4.92	□□□□□ -1.62
SPT3	YDR392W	HXT16	P47185	567 aa		4.92	□□□□□ -1.62
SPT3	YDR392W	VAC7	P53950	1165 aa		4.92	□□□□□ -1.62
SPT3	YDR392W	VPS16	Q03308	798 aa		4.92	□□□□□ -1.62
SPT3	YDR392W	ECM38	Q05902	660 aa	Predicted RBP	4.92	□□□□□ -1.62
SPT3	YDR392W	PER33	Q12144	273 aa		4.92	□□□□□ -1.62
SPT3	YDR392W	BLM10	P43583	2143 aa		4.91	□□□□□ -1.62
SPT3	YDR392W	YIM1	P28625	365 aa		4.91	□□□□□ -1.62
SPT3	YDR392W	KRE6	P32486	720 aa		4.91	□□□□□ -1.62
SPT3	YDR392W	XRS2	P33301	854 aa		4.91	□□□□□ -1.62
SPT3	YDR392W	YEL1	P34225	687 aa		4.91	□□□□□ -1.62
SPT3	YDR392W	MTH1	P35198	433 aa		4.91	□□□□□ -1.62
SPT3	YDR392W	CUE2	P36075	443 aa	Known RBP	4.91	□□□□□ -1.62
SPT3	YDR392W	DTR1	P38125	572 aa		4.91	□□□□□ -1.62
SPT3	YDR392W	YHR020W	P38708	688 aa	Known RBP	4.91	□□□□□ -1.62
SPT3	YDR392W	ERC1	P38767	581 aa		4.91	□□□□□ -1.62
SPT3	YDR392W	CTM1	P38818	585 aa		4.91	□□□□□ -1.62
SPT3	YDR392W	CRG1	P38892	291 aa	RIP-Chip data	4.91	□□□□□ -1.62	not detected
SPT3	YDR392W	ORC5	P50874	479 aa		4.91	□□□□□ -1.62
SPT3	YDR392W	COG7	P53195	279 aa		4.91	□□□□□ -1.62
SPT3	YDR392W	VTC3	Q02725	835 aa		4.91	□□□□□ -1.62
SPT3	YDR392W	ASP3-2	P0CX77	362 aa		4.9	□□□□□ -1.63
SPT3	YDR392W	ASP3-3	P0CX78	362 aa		4.9	□□□□□ -1.63
SPT3	YDR392W	ASP3-4	P0CX79	362 aa		4.9	□□□□□ -1.63
SPT3	YDR392W	ASP3-1	P0CZ17	362 aa		4.9	□□□□□ -1.63
SPT3	YDR392W	SGV1	P23293	657 aa	Known RBP	4.9	□□□□□ -1.63
SPT3	YDR392W	AAR2	P32357	355 aa	Predicted RBP	4.9	□□□□□ -1.63
SPT3	YDR392W	MRP4	P32902	394 aa		4.9	□□□□□ -1.63
SPT3	YDR392W	PMT1	P33775	817 aa		4.9	□□□□□ -1.63
SPT3	YDR392W	CTF13	P35203	478 aa		4.9	□□□□□ -1.63
SPT3	YDR392W	SPC42	P36094	363 aa		4.9	□□□□□ -1.63
SPT3	YDR392W	AGP2	P38090	596 aa		4.9	□□□□□ -1.63
SPT3	YDR392W	SDP1	P40479	209 aa		4.9	□□□□□ -1.63
SPT3	YDR392W	GND2	P53319	492 aa		4.9	□□□□□ -1.63
SPT3	YDR392W	PIR3	Q03180	325 aa		4.9	□□□□□ -1.63
SPT3	YDR392W	HBT1	Q07653	1046 aa	Known RBP	4.9	□□□□□ -1.63
SPT3	YDR392W	NBP2	Q12163	236 aa		4.9	□□□□□ -1.63
SPT3	YDR392W	YDR262W	Q12331	272 aa		4.9	□□□□□ -1.63
SPT3	YDR392W	PHO2	P07269	559 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	MET3	P08536	511 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	PMS1	P14242	873 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	NUP1	P20676	1076 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	NAM9	P27929	486 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	ATO2	P32907	282 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	YAT2	P40017	923 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	DAS1	P47005	663 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	RPC17	P47076	161 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	CTF18	P49956	741 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	NBP35	P52920	328 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	BSC5	P53755	489 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	TOF1	P53840	1238 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	GPD1	Q00055	391 aa	Known RBP	4.89	□□□□□ -1.63
SPT3	YDR392W	DLT1	Q04216	342 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	FRE5	Q08908	694 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	RSA1	Q08932	381 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	SWM1	Q12379	170 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	TRM13	Q12383	476 aa		4.89	□□□□□ -1.63
SPT3	YDR392W	YPT1	P01123	206 aa	Known RBP	4.88	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 35.7 ms