RNA–Protein interactions for RNA: ENST00000488494.5

ITGB1-215, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-215ENST00000488494 ATP2B2Q01814 1243 aa21.2■□□□□ 0.98
ITGB1-215ENST00000488494 IFNL3Q8IZI9 196 aa21.2■□□□□ 0.98
ITGB1-215ENST00000488494 SPICE1Q8N0Z3 855 aa21.2■□□□□ 0.98
ITGB1-215ENST00000488494 PXYLP1Q8TE99 480 aa21.2■□□□□ 0.98
ITGB1-215ENST00000488494 PORCNQ9H237 461 aa21.2■□□□□ 0.98
ITGB1-215ENST00000488494 MKNK2Q9HBH9 465 aa21.2■□□□□ 0.98
ITGB1-215ENST00000488494 TMX2Q9Y320 296 aa21.2■□□□□ 0.98
ITGB1-215ENST00000488494 EEF2P13639 858 aaKnown RBP21.19■□□□□ 0.98
ITGB1-215ENST00000488494 MAPK4P31152 587 aa21.19■□□□□ 0.98
ITGB1-215ENST00000488494 CCAR1Q8IX12 1150 aaKnown RBP21.19■□□□□ 0.98
ITGB1-215ENST00000488494 LPAR1Q92633 364 aa21.19■□□□□ 0.98
ITGB1-215ENST00000488494 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.19■□□□□ 0.98
ITGB1-215ENST00000488494 NAPBQ9H115 298 aa21.19■□□□□ 0.98
ITGB1-215ENST00000488494 VCPKMTQ9H867 229 aa21.19■□□□□ 0.98
ITGB1-215ENST00000488494 KANSL2Q9H9L4 492 aa21.19■□□□□ 0.98
ITGB1-215ENST00000488494 RABGAP1Q9Y3P9 1069 aa21.19■□□□□ 0.98
ITGB1-215ENST00000488494 FOXP2O15409 715 aa21.18■□□□□ 0.98
ITGB1-215ENST00000488494 PRDM1O75626 825 aa21.18■□□□□ 0.98
ITGB1-215ENST00000488494 Q3C1V9 767 aa21.18■□□□□ 0.98
ITGB1-215ENST00000488494 LBX2Q6XYB7 198 aa21.18■□□□□ 0.98
ITGB1-215ENST00000488494 SOCS4Q8WXH5 440 aa21.18■□□□□ 0.98
ITGB1-215ENST00000488494 SHISA4Q96DD7 197 aa21.18■□□□□ 0.98
ITGB1-215ENST00000488494 RNF208Q9H0X6 261 aa21.18■□□□□ 0.98
ITGB1-215ENST00000488494 UNC93B1Q9H1C4 597 aa21.18■□□□□ 0.98
ITGB1-215ENST00000488494 GJD2Q9UKL4 321 aa21.18■□□□□ 0.98
ITGB1-215ENST00000488494 TRIM6-TRIM34B2RNG4 842 aa21.17■□□□□ 0.98
ITGB1-215ENST00000488494 GPR142Q7Z601 462 aa21.17■□□□□ 0.98
ITGB1-215ENST00000488494 FAM227BQ96M60 508 aa21.17■□□□□ 0.98
ITGB1-215ENST00000488494 CWC22Q9HCG8 908 aaKnown RBP21.17■□□□□ 0.98
ITGB1-215ENST00000488494 BTBD7Q9P203 1132 aa21.17■□□□□ 0.98
ITGB1-215ENST00000488494 PDE4DIPQ5VU43 2346 aa21.17■□□□□ 0.98
ITGB1-215ENST00000488494 DOCK3Q8IZD9 2030 aa21.16■□□□□ 0.98
ITGB1-215ENST00000488494 RLFQ13129 1914 aa21.16■□□□□ 0.98
ITGB1-215ENST00000488494 A0A0D9SFI3 127 aa21.16■□□□□ 0.98
ITGB1-215ENST00000488494 RAD21O60216 631 aa21.16■□□□□ 0.98
ITGB1-215ENST00000488494 CCNA1P78396 465 aa21.16■□□□□ 0.98
ITGB1-215ENST00000488494 PLEKHM2Q8IWE5 1019 aa21.16■□□□□ 0.98
ITGB1-215ENST00000488494 ZNF287Q9HBT7 754 aa21.16■□□□□ 0.98
ITGB1-215ENST00000488494 PARP14Q460N5 1801 aa21.15■□□□□ 0.98
ITGB1-215ENST00000488494 WDR46O15213 610 aaKnown RBP21.15■□□□□ 0.98
ITGB1-215ENST00000488494 FLOT1O75955 427 aa21.15■□□□□ 0.98
ITGB1-215ENST00000488494 HMGCRP04035 888 aa21.15■□□□□ 0.98
ITGB1-215ENST00000488494 PPARAQ07869 468 aa21.15■□□□□ 0.98
ITGB1-215ENST00000488494 VPS53Q5VIR6 699 aa21.15■□□□□ 0.98
ITGB1-215ENST00000488494 WDR78Q5VTH9 848 aa21.15■□□□□ 0.98
ITGB1-215ENST00000488494 PLEKHH3Q7Z736 793 aa21.15■□□□□ 0.98
ITGB1-215ENST00000488494 RILPL2Q969X0 211 aa21.15■□□□□ 0.98
ITGB1-215ENST00000488494 NUDT12Q9BQG2 462 aa21.15■□□□□ 0.98
ITGB1-215ENST00000488494 GOPCQ9HD26 462 aa21.15■□□□□ 0.98
ITGB1-215ENST00000488494 PLIN4Q96Q06 1357 aa21.14■□□□□ 0.98
ITGB1-215ENST00000488494 GJB1P08034 283 aa21.14■□□□□ 0.97
ITGB1-215ENST00000488494 CYP2B6P20813 491 aa21.14■□□□□ 0.97
ITGB1-215ENST00000488494 COG2Q14746 738 aa21.14■□□□□ 0.97
ITGB1-215ENST00000488494 SAMD1Q6SPF0 538 aaPredicted RBP21.14■□□□□ 0.97
ITGB1-215ENST00000488494 TRIB2Q92519 343 aa21.14■□□□□ 0.97
ITGB1-215ENST00000488494 HELLSQ9NRZ9 838 aa21.14■□□□□ 0.97
ITGB1-215ENST00000488494 SLC3A2P08195 630 aaKnown RBP21.13■□□□□ 0.97
ITGB1-215ENST00000488494 GJA8P48165 433 aa21.13■□□□□ 0.97
ITGB1-215ENST00000488494 PDE4BQ07343 736 aa21.13■□□□□ 0.97
ITGB1-215ENST00000488494 NMIQ13287 307 aaPredicted RBP21.13■□□□□ 0.97
ITGB1-215ENST00000488494 MORN1Q5T089 497 aa21.13■□□□□ 0.97
ITGB1-215ENST00000488494 ZNF444Q8N0Y2 327 aaPredicted RBP21.13■□□□□ 0.97
ITGB1-215ENST00000488494 NKX2-3Q8TAU0 364 aa21.13■□□□□ 0.97
ITGB1-215ENST00000488494 ATG4CQ96DT6 458 aa21.13■□□□□ 0.97
ITGB1-215ENST00000488494 OSBPL3Q9H4L5 887 aa21.13■□□□□ 0.97
ITGB1-215ENST00000488494 IGKV6D-41A0A0C4DH26 115 aa21.12■□□□□ 0.97
ITGB1-215ENST00000488494 RGS2P41220 211 aa21.12■□□□□ 0.97
ITGB1-215ENST00000488494 TRIM32Q13049 653 aa21.12■□□□□ 0.97
ITGB1-215ENST00000488494 FAM83BQ5T0W9 1011 aa21.12■□□□□ 0.97
ITGB1-215ENST00000488494 ZNF589Q86UQ0 364 aaPredicted RBP21.12■□□□□ 0.97
ITGB1-215ENST00000488494 U2AF1L4Q8WU68 220 aaKnown RBP21.12■□□□□ 0.97
ITGB1-215ENST00000488494 APBA2Q99767 749 aa21.12■□□□□ 0.97
ITGB1-215ENST00000488494 HOXC10Q9NYD6 342 aa21.12■□□□□ 0.97
ITGB1-215ENST00000488494 NYAP2Q9P242 653 aa21.12■□□□□ 0.97
ITGB1-215ENST00000488494 ZNF236Q9UL36 1845 aa21.11■□□□□ 0.97
ITGB1-215ENST00000488494 TSPY3P0CV98 308 aa21.11■□□□□ 0.97
ITGB1-215ENST00000488494 TSPY8P0CW00 308 aa21.11■□□□□ 0.97
ITGB1-215ENST00000488494 ZKSCAN1P17029 563 aaPredicted RBP21.11■□□□□ 0.97
ITGB1-215ENST00000488494 DSG3P32926 999 aa21.11■□□□□ 0.97
ITGB1-215ENST00000488494 MCMDC2Q4G0Z9 681 aa21.11■□□□□ 0.97
ITGB1-215ENST00000488494 TICAM2Q86XR7 235 aa21.11■□□□□ 0.97
ITGB1-215ENST00000488494 MB21D1Q8N884 522 aa21.11■□□□□ 0.97
ITGB1-215ENST00000488494 USP6NLQ92738 828 aa21.11■□□□□ 0.97
ITGB1-215ENST00000488494 CEP95Q96GE4 821 aa21.11■□□□□ 0.97
ITGB1-215ENST00000488494 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.11■□□□□ 0.971e-13■■■■□ 20.9
ITGB1-215ENST00000488494 PAK6Q9NQU5 681 aaPredicted RBP21.11■□□□□ 0.97
ITGB1-215ENST00000488494 FBXO28Q9NVF7 368 aa21.11■□□□□ 0.97
ITGB1-215ENST00000488494 CCDC171Q6TFL3 1326 aa21.1■□□□□ 0.97
ITGB1-215ENST00000488494 MYH4Q9Y623 1939 aa21.1■□□□□ 0.97
ITGB1-215ENST00000488494 XRCC5P13010 732 aaKnown RBP21.1■□□□□ 0.97
ITGB1-215ENST00000488494 CTDSPL2Q05D32 466 aa21.1■□□□□ 0.97
ITGB1-215ENST00000488494 PLS1Q14651 629 aa21.1■□□□□ 0.97
ITGB1-215ENST00000488494 FAM47AQ5JRC9 791 aa21.1■□□□□ 0.97
ITGB1-215ENST00000488494 PRPF38BQ5VTL8 546 aaKnown RBP21.1■□□□□ 0.97
ITGB1-215ENST00000488494 DEFB118Q96PH6 123 aa21.1■□□□□ 0.97
ITGB1-215ENST00000488494 NUP88Q99567 741 aaPredicted RBP21.1■□□□□ 0.97
ITGB1-215ENST00000488494 MOV10L1Q9BXT6 1211 aaKnown RBP21.1■□□□□ 0.97
ITGB1-215ENST00000488494 SPATC1LQ9H0A9 340 aa21.1■□□□□ 0.97
ITGB1-215ENST00000488494 CLIP2Q9UDT6 1046 aa21.1■□□□□ 0.97
ITGB1-215ENST00000488494 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms