RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 PODXL2Q9NZ53 605 aa14.24□□□□□ -0.13
RNF4-201ENST00000314289 FBXO2Q9UK22 296 aaPredicted RBP14.24□□□□□ -0.13
RNF4-201ENST00000314289 HPSEQ9Y251 543 aa14.24□□□□□ -0.13
RNF4-201ENST00000314289 ATP6V0A2Q9Y487 856 aa14.24□□□□□ -0.13
RNF4-201ENST00000314289 PCDHAC2Q9Y5I4 1007 aa14.24□□□□□ -0.13
RNF4-201ENST00000314289 GPR75-ASB3A0A0A6YYF3 556 aa14.24□□□□□ -0.13
RNF4-201ENST00000314289 CDK8P49336 464 aa14.24□□□□□ -0.13
RNF4-201ENST00000314289 RCAN1P53805 252 aa14.24□□□□□ -0.13
RNF4-201ENST00000314289 PPP4CP60510 307 aa14.24□□□□□ -0.13
RNF4-201ENST00000314289 NPY5RQ15761 445 aa14.24□□□□□ -0.13
RNF4-201ENST00000314289 METTL16Q86W50 562 aaKnown RBP14.24□□□□□ -0.13
RNF4-201ENST00000314289 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.24□□□□□ -0.13
RNF4-201ENST00000314289 DAGLAQ9Y4D2 1042 aa14.24□□□□□ -0.13
RNF4-201ENST00000314289 CUTAO60888 179 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 PTPN21Q16825 1174 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 SLC35G1Q2M3R5 365 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 CCDC144BQ3MJ40 725 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 C15orf52Q6ZUT6 534 aaKnown RBP14.23□□□□□ -0.13
RNF4-201ENST00000314289 SP8Q8IXZ3 490 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 EPSTI1Q96J88 318 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 TMEM47Q9BQJ4 181 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 VAT1LQ9HCJ6 419 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 CLIP2Q9UDT6 1046 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 TTF2Q9UNY4 1162 aaKnown RBP14.23□□□□□ -0.13
RNF4-201ENST00000314289 PARP3Q9Y6F1 533 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 SCG2P13521 617 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 CHRNA5P30532 468 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 CACNB3P54284 484 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 PLA2G4DQ86XP0 818 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 EYA3Q99504 573 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 ZSCAN20P17040 1043 aaPredicted RBP14.23□□□□□ -0.13
RNF4-201ENST00000314289 CASP1P29466 404 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 TYW1BQ6NUM6 668 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 HOMER1Q86YM7 354 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 SERTAD1Q9UHV2 236 aa14.23□□□□□ -0.13
RNF4-201ENST00000314289 KLRG2A4D1S0 409 aaPredicted RBP14.22□□□□□ -0.13
RNF4-201ENST00000314289 TRIM75PA6NK02 468 aa14.22□□□□□ -0.13
RNF4-201ENST00000314289 PRR29P0C7W0 189 aa14.22□□□□□ -0.13
RNF4-201ENST00000314289 PPP2R5BQ15173 497 aa14.22□□□□□ -0.13
RNF4-201ENST00000314289 USP17L2Q6R6M4 530 aa14.22□□□□□ -0.13
RNF4-201ENST00000314289 FILIP1Q7Z7B0 1213 aa14.22□□□□□ -0.13
RNF4-201ENST00000314289 SPTLC3Q9NUV7 552 aa14.22□□□□□ -0.13
RNF4-201ENST00000314289 LAMB1P07942 1786 aa14.22□□□□□ -0.13
RNF4-201ENST00000314289 RIOK3O14730 519 aaKnown RBP14.22□□□□□ -0.13
RNF4-201ENST00000314289 CYTH3O43739 400 aa14.22□□□□□ -0.13
RNF4-201ENST00000314289 PTPREP23469 700 aa14.22□□□□□ -0.13
RNF4-201ENST00000314289 LMOD1P29536 600 aaPredicted RBP14.22□□□□□ -0.13
RNF4-201ENST00000314289 GTF2F1P35269 517 aaKnown RBP eCLIP14.22□□□□□ -0.139e-9■■■■■ 35.7
RNF4-201ENST00000314289 DMTNQ08495 405 aa14.22□□□□□ -0.13
RNF4-201ENST00000314289 KRBA2Q6ZNG9 492 aa14.22□□□□□ -0.13
RNF4-201ENST00000314289 DDX4Q9NQI0 724 aaKnown RBP14.22□□□□□ -0.13
RNF4-201ENST00000314289 PCDHA5Q9Y5H7 936 aa14.22□□□□□ -0.13
RNF4-201ENST00000314289 MAST2Q6P0Q8 1798 aa14.22□□□□□ -0.13
RNF4-201ENST00000314289 MCM7P33993 719 aa14.21□□□□□ -0.13
RNF4-201ENST00000314289 HEATR3Q7Z4Q2 680 aa14.21□□□□□ -0.13
RNF4-201ENST00000314289 PDCL2Q8N4E4 241 aa14.21□□□□□ -0.13
RNF4-201ENST00000314289 STAMQ92783 540 aa14.21□□□□□ -0.13
RNF4-201ENST00000314289 PDGFDQ9GZP0 370 aaPredicted RBP14.21□□□□□ -0.13
RNF4-201ENST00000314289 MAD2L2Q9UI95 211 aa14.21□□□□□ -0.13
RNF4-201ENST00000314289 ANKRD31Q8N7Z5 1873 aa14.21□□□□□ -0.13
RNF4-201ENST00000314289 VWA3AA6NCI4 1184 aa14.21□□□□□ -0.13
RNF4-201ENST00000314289 NPR1P16066 1061 aa14.21□□□□□ -0.13
RNF4-201ENST00000314289 CDC25AP30304 524 aa14.21□□□□□ -0.13
RNF4-201ENST00000314289 DGKHQ86XP1 1220 aa14.21□□□□□ -0.13
RNF4-201ENST00000314289 CEP95Q96GE4 821 aa14.21□□□□□ -0.13
RNF4-201ENST00000314289 A0A087X0B3 334 aa14.21□□□□□ -0.14
RNF4-201ENST00000314289 KIF5BP33176 963 aa14.21□□□□□ -0.14
RNF4-201ENST00000314289 PFKFB3Q16875 520 aaPredicted RBP14.21□□□□□ -0.14
RNF4-201ENST00000314289 KIAA0825Q8IV33 1275 aa14.21□□□□□ -0.14
RNF4-201ENST00000314289 KIAA1524Q8TCG1 905 aa14.21□□□□□ -0.14
RNF4-201ENST00000314289 DHX58Q96C10 678 aa14.21□□□□□ -0.14
RNF4-201ENST00000314289 NAT10Q9H0A0 1025 aaKnown RBP14.21□□□□□ -0.14
RNF4-201ENST00000314289 FAM205AQ6ZU69 1335 aa14.2□□□□□ -0.14
RNF4-201ENST00000314289 PLSCR1O15162 318 aa14.2□□□□□ -0.14
RNF4-201ENST00000314289 ATP1A3P13637 1013 aa14.2□□□□□ -0.14
RNF4-201ENST00000314289 AFMP43652 599 aa14.2□□□□□ -0.14
RNF4-201ENST00000314289 NLRP12P59046 1061 aa14.2□□□□□ -0.14
RNF4-201ENST00000314289 PTGDRQ13258 359 aa14.2□□□□□ -0.14
RNF4-201ENST00000314289 UBA5Q9GZZ9 404 aa14.2□□□□□ -0.14
RNF4-201ENST00000314289 BRMS1Q9HCU9 246 aa14.2□□□□□ -0.14
RNF4-201ENST00000314289 FAM196BA6NMK8 535 aa14.2□□□□□ -0.14
RNF4-201ENST00000314289 TTC38Q5R3I4 469 aa14.2□□□□□ -0.14
RNF4-201ENST00000314289 ZNF772Q68DY9 489 aaPredicted RBP14.2□□□□□ -0.14
RNF4-201ENST00000314289 C2CD5Q86YS7 1000 aa14.2□□□□□ -0.14
RNF4-201ENST00000314289 TBC1D22AQ8WUA7 517 aa14.2□□□□□ -0.14
RNF4-201ENST00000314289 GOLGA6L6A8MZA4 724 aa14.19□□□□□ -0.14
RNF4-201ENST00000314289 SMC2O95347 1197 aa14.19□□□□□ -0.14
RNF4-201ENST00000314289 BMP6P22004 513 aa14.19□□□□□ -0.14
RNF4-201ENST00000314289 RXRBP28702 533 aa14.19□□□□□ -0.14
RNF4-201ENST00000314289 EN1Q05925 392 aaPredicted RBP14.19□□□□□ -0.14
RNF4-201ENST00000314289 TCP10Q12799 353 aa14.19□□□□□ -0.14
RNF4-201ENST00000314289 LRRC47Q8N1G4 583 aaKnown RBP14.19□□□□□ -0.14
RNF4-201ENST00000314289 KLHL34Q8N239 644 aa14.19□□□□□ -0.14
RNF4-201ENST00000314289 TNFRSF25Q93038 417 aa14.19□□□□□ -0.14
RNF4-201ENST00000314289 COA1Q9GZY4 146 aa14.19□□□□□ -0.14
RNF4-201ENST00000314289 USP40Q9NVE5 1235 aa14.19□□□□□ -0.14
RNF4-201ENST00000314289 SRPRBQ9Y5M8 271 aaKnown RBP14.19□□□□□ -0.14
RNF4-201ENST00000314289 FRMPD2Q68DX3 1309 aaPredicted RBP14.19□□□□□ -0.14
RNF4-201ENST00000314289 KLRF2D3W0D1 207 aa14.19□□□□□ -0.14
RNF4-201ENST00000314289 IGSF3O75054 1194 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms