RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	RRN6	P32786	894 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	KIC1	P38692	1080 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	PHB1	P40961	287 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	UFE1	P41834	346 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	IMD4	P50094	524 aa	Known RBP	4.95	□□□□□ -1.62
NUP116	YMR047C	MIG2	P53035	382 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	YDR222W	Q04925	415 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	YCS4	Q06156	1176 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	SWA2	Q06677	668 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	SEC2	P17065	759 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	DAL2	P25335	343 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	KRE6	P32486	720 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	JNM1	P36224	373 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	MSR1	P38714	643 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	PIK1	P39104	1066 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	MVP1	P40959	511 aa	Known RBP	4.94	□□□□□ -1.62
NUP116	YMR047C	TIM54	P47045	478 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	YGR021W	P53212	290 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	YGR111W	P53265	400 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	YTP1	P53584	459 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	GCN5	Q03330	439 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	FAR8	Q05040	523 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	GCD2	P12754	651 aa	Predicted RBP	4.94	□□□□□ -1.62
NUP116	YMR047C	PRP16	P15938	1071 aa	Predicted RBP	4.94	□□□□□ -1.62
NUP116	YMR047C	YAP1	P19880	650 aa	Known RBP	4.94	□□□□□ -1.62
NUP116	YMR047C	CHL1	P22516	861 aa	Predicted RBP	4.94	□□□□□ -1.62
NUP116	YMR047C	MIH1	P23748	554 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	ASF2	P32448	525 aa	Predicted RBP	4.94	□□□□□ -1.62
NUP116	YMR047C	PEX2	P32800	271 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	MRP8	P35719	219 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	SET3	P36124	751 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	PCM1	P38628	557 aa	Known RBP	4.94	□□□□□ -1.62
NUP116	YMR047C	PSY2	P40164	858 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	LSG1	P53145	640 aa	Known RBP	4.94	□□□□□ -1.62
NUP116	YMR047C	TGL2	P54857	326 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	MET14	Q02196	202 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	ATG16	Q03818	150 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	OPY2	Q06810	360 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	DAS2	Q12084	232 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	SBP1	P10080	294 aa	Known RBP	4.94	□□□□□ -1.62
NUP116	YMR047C	FZO1	P38297	855 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	MND2	P40577	368 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	YMR187C	Q03236	431 aa		4.94	□□□□□ -1.62
NUP116	YMR047C	ARG1	P22768	420 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	AAT2	P23542	418 aa	Known RBP	4.93	□□□□□ -1.62
NUP116	YMR047C	SSE1	P32589	693 aa	Known RBP	4.93	□□□□□ -1.62
NUP116	YMR047C	SRB2	P34162	210 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	YHL041W	P38730	149 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	ERG10	P41338	398 aa	Known RBP	4.93	□□□□□ -1.62
NUP116	YMR047C	SNG1	P46950	547 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	YJL132W	P47014	750 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	YDR286C	Q05530	114 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	ATG17	Q06410	417 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	SPO75	Q07798	868 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	DDC1	Q08949	612 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	SRO7	Q12038	1033 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	BBP1	Q12365	385 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	YML002W	P0CF17	737 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	TSR4	P25040	408 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	TFB1	P32776	642 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	RSM22	P36056	628 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	BAT1	P38891	393 aa	Known RBP	4.93	□□□□□ -1.62
NUP116	YMR047C	FAR7	P43592	221 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	MET12	P46151	657 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	COG2	P53271	262 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	YNR065C	P53751	1116 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	VPS75	P53853	264 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	YMR206W	Q03695	313 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	MDM36	Q06820	579 aa		4.93	□□□□□ -1.62
NUP116	YMR047C	STE3	P06783	470 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	RPB2	P08518	1224 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	PMA2	P19657	947 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	LRE1	P25579	583 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	HXT3	P32466	567 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	GYP6	P32806	458 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	TEF4	P36008	412 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	CBR1	P38626	284 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	YHB1	P39676	399 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	ALB1	P47019	175 aa	Predicted RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	NIT3	P49954	291 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	GRC3	Q07845	632 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	CDC10	P25342	322 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	FSH1	P38777	243 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	RPH1	P39956	796 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	YER158C	P40095	573 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	YJL055W	P47044	245 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	PRM1	P53835	661 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	RPL22B	P56628	122 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	YML082W	Q04533	649 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	RSC3	Q06639	885 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	AAD4	Q07747	329 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	NDD1	Q08887	554 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	YOR338W	Q99326	363 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	ENO1	P00924	437 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	PAT1	P25644	796 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	SEC1	P30619	724 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	CCR4	P31384	837 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	ALG14	P38242	237 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	SPP381	P38282	291 aa	Predicted RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	SDH8	P38345	138 aa		4.92	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 37.8 ms