RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeast

Gene VPS55, Length 423 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS55	YJR044C	NIT2	P47016	307 aa		1.71	□□□□□ -2.14
VPS55	YJR044C	MDG1	P53885	366 aa		1.71	□□□□□ -2.14
VPS55	YJR044C	MDM1	Q01846	1127 aa		1.71	□□□□□ -2.14
VPS55	YJR044C	IZH1	Q03419	316 aa		1.71	□□□□□ -2.14
VPS55	YJR044C	BLS1	Q06071	122 aa		1.71	□□□□□ -2.14
VPS55	YJR044C	TSR2	Q06672	205 aa	Known RBP	1.71	□□□□□ -2.14
VPS55	YJR044C	BRE1	Q07457	700 aa	Known RBP	1.71	□□□□□ -2.14
VPS55	YJR044C	YDL242W	Q07746	117 aa		1.71	□□□□□ -2.14
VPS55	YJR044C	CWC2	Q12046	339 aa	Predicted RBP	1.71	□□□□□ -2.14
VPS55	YJR044C	DIN7	Q12086	430 aa		1.71	□□□□□ -2.14
VPS55	YJR044C	YLR112W	Q12130	139 aa		1.71	□□□□□ -2.14
VPS55	YJR044C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	1.7	□□□□□ -2.14	not detected
VPS55	YJR044C	RER1	P25560	188 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	PRE2	P30656	287 aa	Known RBP	1.7	□□□□□ -2.14
VPS55	YJR044C	GSH1	P32477	678 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	TAF5	P38129	798 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	YHL041W	P38730	149 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	UME6	P39001	836 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	KRE9	P39005	276 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	FAA2	P39518	744 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	MAM1	P40065	302 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	LAS21	P40367	830 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	MAD2	P40958	196 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	ASK10	P48361	1146 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	ORC5	P50874	479 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	YNR071C	P53757	342 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	TGL2	P54857	326 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	YML131W	Q03102	365 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	FCP1	Q03254	732 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	GIR2	Q03768	265 aa	Predicted RBP	1.7	□□□□□ -2.14
VPS55	YJR044C	SPC19	Q03954	165 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	ECM38	Q05902	660 aa	Predicted RBP	1.7	□□□□□ -2.14
VPS55	YJR044C	GPN2	Q08726	347 aa	Predicted RBP	1.7	□□□□□ -2.14
VPS55	YJR044C	NUR1	Q12066	484 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	YOL114C	Q12322	202 aa		1.7	□□□□□ -2.14
VPS55	YJR044C	PIF1	P07271	859 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	NUC1	P08466	329 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	CDC23	P16522	626 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	PHO3	P24031	467 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	YCR061W	P25639	631 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	SEC1	P30619	724 aa	Known RBP	1.69	□□□□□ -2.14
VPS55	YJR044C	RAD16	P31244	790 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	SLC1	P33333	303 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	BLI1	P35727	113 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	RKM3	P38222	552 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	ARN1	P38731	627 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	BZZ1	P38822	633 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	ACA1	P39970	489 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	PCL6	P40038	420 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	IES5	P40060	125 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	KAP123	P40069	1113 aa	Known RBP	1.69	□□□□□ -2.14
VPS55	YJR044C	ASG1	P40467	964 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	SMK1	P41808	388 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	GSM1	P42950	618 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	YGL036W	P53185	909 aa	Predicted RBP	1.69	□□□□□ -2.14
VPS55	YJR044C	TEP1	P53916	434 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	GTR1	Q00582	310 aa		1.69	□□□□□ -2.14
VPS55	YJR044C	APL5	Q08951	932 aa	Known RBP	1.69	□□□□□ -2.14
VPS55	YJR044C	REV1	P12689	985 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	APA1	P16550	321 aa	Known RBP	1.68	□□□□□ -2.14
VPS55	YJR044C	MSM1	P22438	575 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	PRP45	P28004	379 aa	Predicted RBP	1.68	□□□□□ -2.14
VPS55	YJR044C	HEM12	P32347	362 aa	Predicted RBP	1.68	□□□□□ -2.14
VPS55	YJR044C	MCM10	P32354	571 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	PET309	P32522	965 aa	Predicted RBP	1.68	□□□□□ -2.14
VPS55	YJR044C	PXA2	P34230	853 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	APM3	P38153	483 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	PSY4	P38193	441 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	ERC1	P38767	581 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	NDE1	P40215	560 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	PSF2	P40359	213 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	CDC1	P40986	491 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	ROK1	P45818	564 aa	Predicted RBP	1.68	□□□□□ -2.14
VPS55	YJR044C	IDS2	P46958	469 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	SRB7	P47822	140 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	CNM67	P53865	581 aa	Known RBP	1.68	□□□□□ -2.14
VPS55	YJR044C	CRZ1	P53968	678 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	YLR281C	Q05863	155 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	OPY2	Q06810	360 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	SSP2	Q08646	371 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	PSF3	Q12146	194 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	ERP4	Q12450	207 aa		1.68	□□□□□ -2.14
VPS55	YJR044C	MIS1	P09440	975 aa	Known RBP	1.67	□□□□□ -2.14
VPS55	YJR044C	FUR1	P18562	216 aa	Known RBP	1.67	□□□□□ -2.14
VPS55	YJR044C	KGD2	P19262	463 aa	Predicted RBP	1.67	□□□□□ -2.14
VPS55	YJR044C	PGS1	P25578	521 aa		1.67	□□□□□ -2.14
VPS55	YJR044C	CDC60	P26637	1090 aa	Known RBP	1.67	□□□□□ -2.14
VPS55	YJR044C	VBA2	P38358	474 aa	Known RBP	1.67	□□□□□ -2.14
VPS55	YJR044C	VPS41	P38959	992 aa		1.67	□□□□□ -2.14
VPS55	YJR044C	RRP8	P38961	392 aa	Known RBP	1.67	□□□□□ -2.14
VPS55	YJR044C	STL1	P39932	569 aa		1.67	□□□□□ -2.14
VPS55	YJR044C	ARB1	P40024	610 aa	Known RBP	1.67	□□□□□ -2.14
VPS55	YJR044C	ERR3	P42222	437 aa		1.67	□□□□□ -2.14
VPS55	YJR044C	VPS25	P47142	202 aa		1.67	□□□□□ -2.14
VPS55	YJR044C	YPR003C	P53394	754 aa		1.67	□□□□□ -2.14
VPS55	YJR044C	ESBP6	P53918	673 aa		1.67	□□□□□ -2.14
VPS55	YJR044C	YAT1	P80235	687 aa		1.67	□□□□□ -2.14
VPS55	YJR044C	MRPL13	Q02204	264 aa		1.67	□□□□□ -2.14
VPS55	YJR044C	ADD37	Q03233	198 aa		1.67	□□□□□ -2.14
VPS55	YJR044C	CRF1	Q04930	467 aa		1.67	□□□□□ -2.14

Retrieved 100 of 5,963 RNA–protein pairs in 15.8 ms