RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SIM1	YIL123W	USE1	P53146	245 aa		11.32	□□□□□ -0.6
SIM1	YIL123W	PEX8	P53248	589 aa		11.32	□□□□□ -0.6
SIM1	YIL123W	LGE1	Q02796	332 aa	Known RBP	11.32	□□□□□ -0.6
SIM1	YIL123W	APC9	Q12107	265 aa		11.32	□□□□□ -0.6
SIM1	YIL123W	CHS5	Q12114	671 aa	Known RBP	11.32	□□□□□ -0.6
SIM1	YIL123W	RRP36	Q12481	300 aa	Predicted RBP	11.32	□□□□□ -0.6
SIM1	YIL123W	CLN1	P20437	546 aa		11.31	□□□□□ -0.6
SIM1	YIL123W	MRM1	P25270	412 aa		11.31	□□□□□ -0.6
SIM1	YIL123W	SFB3	P38810	929 aa		11.31	□□□□□ -0.6
SIM1	YIL123W	FRT2	P39734	528 aa		11.31	□□□□□ -0.6
SIM1	YIL123W	YJR061W	P40355	935 aa		11.31	□□□□□ -0.6
SIM1	YIL123W	AXL1	P40851	1208 aa		11.31	□□□□□ -0.6
SIM1	YIL123W	ARH1	P48360	493 aa		11.31	□□□□□ -0.6
SIM1	YIL123W	COQ6	P53318	479 aa		11.31	□□□□□ -0.6
SIM1	YIL123W	DOS2	P54858	310 aa		11.31	□□□□□ -0.6
SIM1	YIL123W	NUP100	Q02629	959 aa		11.31	□□□□□ -0.6
SIM1	YIL123W	BSP1	Q06604	576 aa		11.31	□□□□□ -0.6
SIM1	YIL123W	GPN2	Q08726	347 aa	Predicted RBP	11.31	□□□□□ -0.6
SIM1	YIL123W	UBR2	Q07963	1872 aa		11.3	□□□□□ -0.6
SIM1	YIL123W	MTF1	P14908	341 aa	Known RBP	11.3	□□□□□ -0.6
SIM1	YIL123W	HSC82	P15108	705 aa	Known RBP	11.3	□□□□□ -0.6
SIM1	YIL123W	VAC17	P25591	423 aa		11.3	□□□□□ -0.6
SIM1	YIL123W	PSE1	P32337	1089 aa	Known RBP	11.3	□□□□□ -0.6
SIM1	YIL123W	TSC10	P38342	320 aa		11.3	□□□□□ -0.6
SIM1	YIL123W	BUD13	P46947	266 aa	Predicted RBP	11.3	□□□□□ -0.6
SIM1	YIL123W	MIG2	P53035	382 aa		11.3	□□□□□ -0.6
SIM1	YIL123W	PET117	Q02771	107 aa		11.3	□□□□□ -0.6
SIM1	YIL123W	RPN4	Q03465	531 aa		11.3	□□□□□ -0.6
SIM1	YIL123W	YMR155W	Q03795	547 aa		11.3	□□□□□ -0.6
SIM1	YIL123W	ENT4	Q07872	247 aa		11.3	□□□□□ -0.6
SIM1	YIL123W	YPQ1	Q12010	308 aa		11.3	□□□□□ -0.6
SIM1	YIL123W	RMD5	Q12508	421 aa		11.3	□□□□□ -0.6
SIM1	YIL123W	RHO2	P06781	192 aa		11.29	□□□□□ -0.6
SIM1	YIL123W	GLN4	P13188	809 aa	Known RBP	11.29	□□□□□ -0.6
SIM1	YIL123W	PDE1	P22434	369 aa		11.29	□□□□□ -0.6
SIM1	YIL123W	KTR4	P38131	464 aa		11.29	□□□□□ -0.6
SIM1	YIL123W	APM3	P38153	483 aa		11.29	□□□□□ -0.6
SIM1	YIL123W	BZZ1	P38822	633 aa		11.29	□□□□□ -0.6
SIM1	YIL123W	RRD1	P40454	393 aa	Known RBP	11.29	□□□□□ -0.6
SIM1	YIL123W	RLP7	P40693	322 aa	Known RBP	11.29	□□□□□ -0.6
SIM1	YIL123W	PSP1	P50896	841 aa	Known RBP	11.29	□□□□□ -0.6
SIM1	YIL123W	EFM6	P53970	246 aa		11.29	□□□□□ -0.6
SIM1	YIL123W	RPL34A	P87262	121 aa	Predicted RBP	11.29	□□□□□ -0.6
SIM1	YIL123W	CSN9	Q03981	162 aa		11.29	□□□□□ -0.6
SIM1	YIL123W	HPT1	Q04178	221 aa	Known RBP	11.29	□□□□□ -0.6
SIM1	YIL123W	YPR089W	O13585	888 aa		11.28	□□□□□ -0.6
SIM1	YIL123W	SPE1	P08432	466 aa		11.28	□□□□□ -0.6
SIM1	YIL123W	TRX2	P22803	104 aa	Known RBP	11.28	□□□□□ -0.6
SIM1	YIL123W	RAD14	P28519	371 aa		11.28	□□□□□ -0.6
SIM1	YIL123W	BEM1	P29366	551 aa		11.28	□□□□□ -0.6
SIM1	YIL123W	ISF1	P32488	338 aa		11.28	□□□□□ -0.6
SIM1	YIL123W	TOM20	P35180	183 aa		11.28	□□□□□ -0.6
SIM1	YIL123W	CUE2	P36075	443 aa	Known RBP	11.28	□□□□□ -0.6
SIM1	YIL123W	STB5	P38699	743 aa		11.28	□□□□□ -0.6
SIM1	YIL123W	YHL008C	P38750	627 aa		11.28	□□□□□ -0.6
SIM1	YIL123W	SEC31	P38968	1273 aa	Known RBP	11.28	□□□□□ -0.6
SIM1	YIL123W	YHB1	P39676	399 aa	Known RBP	11.28	□□□□□ -0.6
SIM1	YIL123W	HAT2	P39984	401 aa		11.28	□□□□□ -0.6
SIM1	YIL123W	FAF1	P40546	346 aa	Predicted RBP	11.28	□□□□□ -0.6
SIM1	YIL123W	YNR063W	P53749	607 aa		11.28	□□□□□ -0.6
SIM1	YIL123W	HEH2	Q03281	663 aa		11.28	□□□□□ -0.6
SIM1	YIL123W	RTN1	Q04947	295 aa	Known RBP	11.28	□□□□□ -0.6
SIM1	YIL123W	YSP3	P25036	478 aa		11.27	□□□□□ -0.6
SIM1	YIL123W	SGE1	P33335	543 aa		11.27	□□□□□ -0.6
SIM1	YIL123W	MGS1	P40151	587 aa		11.27	□□□□□ -0.6
SIM1	YIL123W	ALG5	P40350	334 aa		11.27	□□□□□ -0.6
SIM1	YIL123W	RPN9	Q04062	393 aa	Known RBP	11.27	□□□□□ -0.6
SIM1	YIL123W	YCS4	Q06156	1176 aa		11.27	□□□□□ -0.6
SIM1	YIL123W	YOR387C	Q08910	206 aa		11.27	□□□□□ -0.6
SIM1	YIL123W	STE2	D6VTK4	431 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	COX6	P00427	148 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	NSP1	P14907	823 aa	Known RBP	11.26	□□□□□ -0.61
SIM1	YIL123W	MIH1	P23748	554 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	SPR1	P32603	445 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	POL12	P38121	705 aa	Predicted RBP	11.26	□□□□□ -0.61
SIM1	YIL123W	SLX8	P40072	274 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	FMP10	P40098	244 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	OSH6	Q02201	448 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	PRP6	P19735	899 aa	Predicted RBP	11.26	□□□□□ -0.61
SIM1	YIL123W	PYC2	P32327	1180 aa	Known RBP	11.26	□□□□□ -0.61
SIM1	YIL123W	IMP3	P32899	183 aa	Predicted RBP	11.26	□□□□□ -0.61
SIM1	YIL123W	NUP120	P35729	1037 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	ASK1	P35734	292 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	MRPL40	P36534	297 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	MAK5	P38112	773 aa	Predicted RBP	11.26	□□□□□ -0.61
SIM1	YIL123W	RGI2	P40188	164 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	YIL161W	P40449	235 aa	Known RBP	11.26	□□□□□ -0.61
SIM1	YIL123W	MDJ2	P42834	146 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	AIF1	P52923	378 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	SAP4	P53036	818 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	REG1	Q00816	1014 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	SPP2	Q02521	185 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	YLR257W	Q06146	321 aa	Known RBP	11.26	□□□□□ -0.61
SIM1	YIL123W	SEC10	Q06245	871 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	DIA2	Q08496	732 aa	Predicted RBP	11.26	□□□□□ -0.61
SIM1	YIL123W	YIG1	Q08956	461 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	MDY2	Q12285	212 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	YLR149C	Q99296	730 aa		11.26	□□□□□ -0.61
SIM1	YIL123W	TAO3	P40468	2376 aa		11.25	□□□□□ -0.61
SIM1	YIL123W	HIP1	P06775	603 aa		11.25	□□□□□ -0.61

Retrieved 100 of 5,963 RNA–protein pairs in 39.2 ms