RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W MAD2P40958 196 aa1.17□□□□□ -2.22
PRP42YDR235W YGL242CP53066 181 aa1.17□□□□□ -2.22
PRP42YDR235W SWF1Q04629 336 aa1.17□□□□□ -2.22
PRP42YDR235W FRE3Q08905 711 aa1.17□□□□□ -2.22
PRP42YDR235W CWC2Q12046 339 aaPredicted RBP1.17□□□□□ -2.22
PRP42YDR235W NUP145P49687 1317 aa1.16□□□□□ -2.22
PRP42YDR235W CBP1P07252 654 aa1.16□□□□□ -2.22
PRP42YDR235W GPA1P08539 472 aa1.16□□□□□ -2.22
PRP42YDR235W RPS2P25443 254 aaKnown RBP1.16□□□□□ -2.22
PRP42YDR235W SRO77P38163 1010 aa1.16□□□□□ -2.22
PRP42YDR235W ARB1P40024 610 aaKnown RBP1.16□□□□□ -2.22
PRP42YDR235W PRE5P40302 234 aaKnown RBP1.16□□□□□ -2.22
PRP42YDR235W NPA3P47122 385 aa1.16□□□□□ -2.22
PRP42YDR235W ALG12P53730 551 aa1.16□□□□□ -2.22
PRP42YDR235W SMA1Q02651 245 aa1.16□□□□□ -2.22
PRP42YDR235W TRS31Q03337 283 aa1.16□□□□□ -2.22
PRP42YDR235W SKY1Q03656 742 aa1.16□□□□□ -2.22
PRP42YDR235W LAC1P28496 418 aa1.15□□□□□ -2.22
PRP42YDR235W LEU5P38702 357 aa1.15□□□□□ -2.22
PRP42YDR235W PMT3P47190 753 aa1.15□□□□□ -2.22
PRP42YDR235W YRB30P53107 440 aaPredicted RBP1.15□□□□□ -2.22
PRP42YDR235W YNL181WP53878 407 aa1.15□□□□□ -2.22
PRP42YDR235W YER145C-AA0A023PYF4 145 aa1.15□□□□□ -2.23
PRP42YDR235W PDE1P22434 369 aa1.15□□□□□ -2.23
PRP42YDR235W YCR006CP25350 157 aa1.15□□□□□ -2.23
PRP42YDR235W RPS7AP26786 190 aaKnown RBP1.15□□□□□ -2.23
PRP42YDR235W VFA1P40080 203 aa1.15□□□□□ -2.23
PRP42YDR235W GPP2P40106 250 aaKnown RBP1.15□□□□□ -2.23
PRP42YDR235W BSC1Q12140 328 aa1.15□□□□□ -2.23
PRP42YDR235W COX1P00401 534 aa1.14□□□□□ -2.23
PRP42YDR235W SSP120P39931 234 aaKnown RBP1.14□□□□□ -2.23
PRP42YDR235W STL1P39932 569 aa1.14□□□□□ -2.23
PRP42YDR235W POL31P46957 487 aa1.14□□□□□ -2.23
PRP42YDR235W DBP10Q12389 995 aaKnown RBP1.14□□□□□ -2.23
PRP42YDR235W RMP1Q12530 201 aa1.14□□□□□ -2.23
PRP42YDR235W YBR255C-AQ3E776 120 aa1.14□□□□□ -2.23
PRP42YDR235W CTT1P06115 562 aa1.13□□□□□ -2.23
PRP42YDR235W SMK1P41808 388 aa1.13□□□□□ -2.23
PRP42YDR235W YGL081WP53156 320 aa1.13□□□□□ -2.23
PRP42YDR235W YGR079WP53249 370 aa1.13□□□□□ -2.23
PRP42YDR235W UTP21Q06078 939 aaPredicted RBP1.13□□□□□ -2.23
PRP42YDR235W GUK1P15454 187 aaKnown RBP1.12□□□□□ -2.23
PRP42YDR235W SWC3P31376 625 aa1.12□□□□□ -2.23
PRP42YDR235W PPG1P32838 368 aa1.12□□□□□ -2.23
PRP42YDR235W PDR3P33200 976 aa1.12□□□□□ -2.23
PRP42YDR235W YPK3P38070 525 aa1.12□□□□□ -2.23
PRP42YDR235W MDM31P38880 579 aa1.12□□□□□ -2.23
PRP42YDR235W RTS1P38903 757 aa1.12□□□□□ -2.23
PRP42YDR235W YIR014WP40570 242 aa1.12□□□□□ -2.23
PRP42YDR235W DUG1P43616 481 aaKnown RBP1.12□□□□□ -2.23
PRP42YDR235W YNR029CP53729 429 aaKnown RBP1.12□□□□□ -2.23
PRP42YDR235W ESF2P53743 316 aaKnown RBP1.12□□□□□ -2.23
PRP42YDR235W YNL234WP53857 426 aa1.12□□□□□ -2.23
PRP42YDR235W YNL034WP53963 612 aa1.12□□□□□ -2.23
PRP42YDR235W YDR415CQ04033 374 aaPredicted RBP1.12□□□□□ -2.23
PRP42YDR235W RSF1Q05043 376 aa1.12□□□□□ -2.23
PRP42YDR235W PSR2Q07949 397 aa1.12□□□□□ -2.23
PRP42YDR235W YTA7P40340 1379 aa1.12□□□□□ -2.23
PRP42YDR235W PGI1P12709 554 aaKnown RBP1.11□□□□□ -2.23
PRP42YDR235W GLN3P18494 730 aa1.11□□□□□ -2.23
PRP42YDR235W COX11P19516 300 aaKnown RBP1.11□□□□□ -2.23
PRP42YDR235W FUN12P39730 1002 aaKnown RBP1.11□□□□□ -2.23
PRP42YDR235W NIT2P47016 307 aa1.11□□□□□ -2.23
PRP42YDR235W YGR237CP50089 785 aa1.11□□□□□ -2.23
PRP42YDR235W SPC105P53148 917 aa1.11□□□□□ -2.23
PRP42YDR235W HOL1P53389 586 aa1.11□□□□□ -2.23
PRP42YDR235W ASI1P54074 624 aa1.11□□□□□ -2.23
PRP42YDR235W UTP14Q04500 899 aaKnown RBP1.11□□□□□ -2.23
PRP42YDR235W TRI1Q05024 226 aa1.11□□□□□ -2.23
PRP42YDR235W ECM38Q05902 660 aaPredicted RBP1.11□□□□□ -2.23
PRP42YDR235W YLR455WQ06188 304 aa1.11□□□□□ -2.23
PRP42YDR235W PSF3Q12146 194 aa1.11□□□□□ -2.23
PRP42YDR235W SOD1P00445 154 aaKnown RBP1.11□□□□□ -2.23
PRP42YDR235W SUI3P09064 285 aaKnown RBP1.11□□□□□ -2.23
PRP42YDR235W MRP2P10663 115 aaPredicted RBP1.11□□□□□ -2.23
PRP42YDR235W PHM8P40025 321 aa1.11□□□□□ -2.23
PRP42YDR235W EMP65P40085 556 aa1.11□□□□□ -2.23
PRP42YDR235W RTS2P40962 232 aa1.11□□□□□ -2.23
PRP42YDR235W UBX6P47049 396 aa1.11□□□□□ -2.23
PRP42YDR235W ASK10P48361 1146 aa1.11□□□□□ -2.23
PRP42YDR235W EKI1Q03764 534 aa1.11□□□□□ -2.23
PRP42YDR235W VPS64Q03944 604 aa1.11□□□□□ -2.23
PRP42YDR235W YDR109CQ04585 715 aa1.11□□□□□ -2.23
PRP42YDR235W MCP2Q06567 569 aa1.11□□□□□ -2.23
PRP42YDR235W AIM6Q07716 390 aa1.11□□□□□ -2.23
PRP42YDR235W NAT1P12945 854 aaKnown RBP1.1□□□□□ -2.23
PRP42YDR235W PCT1P13259 424 aa1.1□□□□□ -2.23
PRP42YDR235W STE50P25344 346 aa1.1□□□□□ -2.23
PRP42YDR235W YEL045CP32616 141 aa1.1□□□□□ -2.23
PRP42YDR235W LOS1P33418 1100 aaPredicted RBP1.1□□□□□ -2.23
PRP42YDR235W IAH1P41734 238 aa1.1□□□□□ -2.23
PRP42YDR235W FET5P43561 622 aa1.1□□□□□ -2.23
PRP42YDR235W YJR142WP47173 342 aa1.1□□□□□ -2.23
PRP42YDR235W YLR049CQ12110 428 aa1.1□□□□□ -2.23
PRP42YDR235W EDE1P34216 1381 aa1.09□□□□□ -2.23
PRP42YDR235W MRS3P10566 314 aa1.09□□□□□ -2.23
PRP42YDR235W HEM12P32347 362 aaPredicted RBP1.09□□□□□ -2.23
PRP42YDR235W SCS2P40075 244 aaKnown RBP1.09□□□□□ -2.23
PRP42YDR235W MSY1P48527 492 aa1.09□□□□□ -2.23
PRP42YDR235W SLD3P53135 668 aa1.09□□□□□ -2.23
Retrieved 100 of 5,963 RNA–protein pairs in 51.5 ms