RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C EFM2P38347 419 aa2.37□□□□□ -2.03
PCF11YDR228C FOL1P53848 824 aa2.37□□□□□ -2.03
PCF11YDR228C YMR317WQ04893 1140 aa2.37□□□□□ -2.03
PCF11YDR228C FRE3Q08905 711 aa2.37□□□□□ -2.03
PCF11YDR228C BAG7Q12128 409 aa2.37□□□□□ -2.03
PCF11YDR228C YLR112WQ12130 139 aa2.37□□□□□ -2.03
PCF11YDR228C FUN12P39730 1002 aaKnown RBP2.36□□□□□ -2.03
PCF11YDR228C MAD3P47074 515 aa2.36□□□□□ -2.03
PCF11YDR228C UBP8P50102 471 aa2.36□□□□□ -2.03
PCF11YDR228C YGL036WP53185 909 aaPredicted RBP2.36□□□□□ -2.03
PCF11YDR228C YPL108WQ02872 168 aaPredicted RBP2.36□□□□□ -2.03
PCF11YDR228C DIG1Q03063 452 aaKnown RBP2.36□□□□□ -2.03
PCF11YDR228C GPN2Q08726 347 aaPredicted RBP2.36□□□□□ -2.03
PCF11YDR228C APL5Q08951 932 aaKnown RBP2.36□□□□□ -2.03
PCF11YDR228C SUL2Q12325 893 aa2.36□□□□□ -2.03
PCF11YDR228C RVB2Q12464 471 aaKnown RBP2.36□□□□□ -2.03
PCF11YDR228C YMR230W-AQ3E7B5 62 aa2.36□□□□□ -2.03
PCF11YDR228C GPA1P08539 472 aa2.35□□□□□ -2.03
PCF11YDR228C YSP3P25036 478 aa2.35□□□□□ -2.03
PCF11YDR228C PPZ1P26570 692 aa2.35□□□□□ -2.03
PCF11YDR228C ASG1P40467 964 aa2.35□□□□□ -2.03
PCF11YDR228C VPS25P47142 202 aa2.35□□□□□ -2.03
PCF11YDR228C IMA1P53051 589 aa2.35□□□□□ -2.03
PCF11YDR228C YGL260WP53056 76 aa2.35□□□□□ -2.03
PCF11YDR228C YDR109CQ04585 715 aa2.35□□□□□ -2.03
PCF11YDR228C RTT103Q05543 409 aa2.35□□□□□ -2.03
PCF11YDR228C ECI1Q05871 280 aa2.35□□□□□ -2.03
PCF11YDR228C POS5Q06892 414 aa2.35□□□□□ -2.03
PCF11YDR228C GEX2P36173 615 aa2.35□□□□□ -2.03
PCF11YDR228C TAM41P53230 385 aa2.35□□□□□ -2.03
PCF11YDR228C ESBP6P53918 673 aa2.35□□□□□ -2.03
PCF11YDR228C YMR254CQ04838 102 aa2.35□□□□□ -2.03
PCF11YDR228C SCW10Q04951 389 aa2.35□□□□□ -2.03
PCF11YDR228C YLR455WQ06188 304 aa2.35□□□□□ -2.03
PCF11YDR228C ATG23Q06671 453 aa2.35□□□□□ -2.03
PCF11YDR228C YCR006CP25350 157 aa2.34□□□□□ -2.03
PCF11YDR228C SEC1P30619 724 aaKnown RBP2.34□□□□□ -2.03
PCF11YDR228C FMP46P36141 133 aaKnown RBP2.34□□□□□ -2.03
PCF11YDR228C VRG4P40107 337 aa2.34□□□□□ -2.03
PCF11YDR228C CAB2P40506 365 aa2.34□□□□□ -2.03
PCF11YDR228C DJP1P40564 432 aa2.34□□□□□ -2.03
PCF11YDR228C UBX6P47049 396 aa2.34□□□□□ -2.03
PCF11YDR228C IZH1Q03419 316 aa2.34□□□□□ -2.03
PCF11YDR228C BRE1Q07457 700 aaKnown RBP2.34□□□□□ -2.03
PCF11YDR228C YER145C-AA0A023PYF4 145 aa2.33□□□□□ -2.04
PCF11YDR228C YML003WP0CF16 290 aa2.33□□□□□ -2.04
PCF11YDR228C MRP2P10663 115 aaPredicted RBP2.33□□□□□ -2.04
PCF11YDR228C FMP42Q04991 504 aa2.33□□□□□ -2.04
PCF11YDR228C IWR1Q07532 353 aaPredicted RBP2.33□□□□□ -2.04
PCF11YDR228C YOL114CQ12322 202 aa2.33□□□□□ -2.04
PCF11YDR228C ADE3P07245 946 aaKnown RBP2.33□□□□□ -2.04
PCF11YDR228C RIT1P23796 513 aa2.33□□□□□ -2.04
PCF11YDR228C STE50P25344 346 aa2.33□□□□□ -2.04
PCF11YDR228C LRE1P25579 583 aaKnown RBP2.33□□□□□ -2.04
PCF11YDR228C SKP2P42843 763 aa2.33□□□□□ -2.04
PCF11YDR228C TEP1P53916 434 aa2.33□□□□□ -2.04
PCF11YDR228C ASI1P54074 624 aa2.33□□□□□ -2.04
PCF11YDR228C ADE16P54113 591 aaKnown RBP2.33□□□□□ -2.04
PCF11YDR228C ATG21Q02887 496 aa2.33□□□□□ -2.04
PCF11YDR228C MTG1Q03151 367 aaPredicted RBP2.33□□□□□ -2.04
PCF11YDR228C PET122P10355 254 aa2.32□□□□□ -2.04
PCF11YDR228C SSB1P11484 613 aaKnown RBP2.32□□□□□ -2.04
PCF11YDR228C SST2P11972 698 aaKnown RBP2.32□□□□□ -2.04
PCF11YDR228C SSB2P40150 613 aaKnown RBP2.32□□□□□ -2.04
PCF11YDR228C SAD1P43589 448 aa2.32□□□□□ -2.04
PCF11YDR228C CPR6P53691 371 aaKnown RBP2.32□□□□□ -2.04
PCF11YDR228C POL3P15436 1097 aa2.31□□□□□ -2.04
PCF11YDR228C SRP54P20424 541 aaKnown RBP2.31□□□□□ -2.04
PCF11YDR228C SWI4P25302 1093 aaKnown RBP2.31□□□□□ -2.04
PCF11YDR228C RFA2P26754 273 aaKnown RBP2.31□□□□□ -2.04
PCF11YDR228C ARP2P32381 391 aaKnown RBP2.31□□□□□ -2.04
PCF11YDR228C BZZ1P38822 633 aa2.31□□□□□ -2.04
PCF11YDR228C IML2P47031 731 aa2.31□□□□□ -2.04
PCF11YDR228C PSP1P50896 841 aaKnown RBP2.31□□□□□ -2.04
PCF11YDR228C CUL3P53202 744 aa2.31□□□□□ -2.04
PCF11YDR228C MOT3P54785 490 aaKnown RBP2.31□□□□□ -2.04
PCF11YDR228C SND1Q04007 877 aa2.31□□□□□ -2.04
PCF11YDR228C CHO1P08456 276 aa2.31□□□□□ -2.04
PCF11YDR228C HNM1P19807 563 aa2.31□□□□□ -2.04
PCF11YDR228C EXO84P38261 753 aa2.31□□□□□ -2.04
PCF11YDR228C YNL181WP53878 407 aa2.31□□□□□ -2.04
PCF11YDR228C MAK10Q02197 733 aa2.31□□□□□ -2.04
PCF11YDR228C TAH18Q12181 623 aa2.31□□□□□ -2.04
PCF11YDR228C CBP1P07252 654 aa2.3□□□□□ -2.04
PCF11YDR228C PIF1P07271 859 aa2.3□□□□□ -2.04
PCF11YDR228C FSH1P38777 243 aaKnown RBP2.3□□□□□ -2.04
PCF11YDR228C SPC72P39723 622 aa2.3□□□□□ -2.04
PCF11YDR228C RPN11P43588 306 aaKnown RBP2.3□□□□□ -2.04
PCF11YDR228C PEX8P53248 589 aa2.3□□□□□ -2.04
PCF11YDR228C DCP2P53550 970 aaKnown RBP2.3□□□□□ -2.04
PCF11YDR228C VAM6Q07468 1049 aa2.3□□□□□ -2.04
PCF11YDR228C MPD2Q99316 277 aa2.3□□□□□ -2.04
PCF11YDR228C MSS18P08593 268 aa2.29□□□□□ -2.04
PCF11YDR228C SUI3P09064 285 aaKnown RBP2.29□□□□□ -2.04
PCF11YDR228C APM3P38153 483 aa2.29□□□□□ -2.04
PCF11YDR228C UBP13P38187 747 aa2.29□□□□□ -2.04
PCF11YDR228C YJL070CP40361 888 aa2.29□□□□□ -2.04
PCF11YDR228C ATG27P46989 271 aa2.29□□□□□ -2.04
PCF11YDR228C MIS1P09440 975 aaKnown RBP2.28□□□□□ -2.04
PCF11YDR228C RAD24P32641 659 aa2.28□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 31.4 ms