RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	RAD5	P32849	1169 aa	Predicted RBP	4.67	□□□□□ -1.66
CDC48	YDL126C	NUF2	P33895	451 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	YSW1	P38280	609 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	YEL068C	P39977	110 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	NUP84	P52891	726 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	GSF2	Q04697	403 aa	Known RBP	4.67	□□□□□ -1.66
CDC48	YDL126C	STE23	Q06010	1027 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	YLR346C	Q06139	101 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	YOR059C	Q08448	450 aa	Known RBP	4.67	□□□□□ -1.66
CDC48	YDL126C	Q0142	Q9ZZW4	58 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	MYO1	P08964	1928 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	RER1	P25560	188 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	ITR2	P30606	609 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	YKR018C	P36114	725 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	MRPL10	P36520	322 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	KSP1	P38691	1029 aa	Known RBP	4.67	□□□□□ -1.66
CDC48	YDL126C	CTM1	P38818	585 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	YHB1	P39676	399 aa	Known RBP	4.67	□□□□□ -1.66
CDC48	YDL126C	YER130C	P39959	443 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	KAP123	P40069	1113 aa	Known RBP	4.67	□□□□□ -1.66
CDC48	YDL126C	YJL068C	P40363	299 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	YGR266W	P53326	701 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	DSE4	P53753	1117 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	RPT6	Q01939	405 aa	Known RBP	4.67	□□□□□ -1.66
CDC48	YDL126C	SNZ1	Q03148	297 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	VID22	Q05934	901 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	MET17	P06106	444 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	CDC6	P09119	513 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	YEL043W	P32618	956 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	STE13	P33894	931 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	SSZ1	P38788	538 aa	Known RBP	4.66	□□□□□ -1.66
CDC48	YDL126C	CEM1	P39525	442 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	SWD1	P39706	426 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	YIL161W	P40449	235 aa	Known RBP	4.66	□□□□□ -1.66
CDC48	YDL126C	PHB1	P40961	287 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	BRE5	P53741	515 aa	Known RBP	4.66	□□□□□ -1.66
CDC48	YDL126C	PGA2	P53903	129 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	PNG1	Q02890	363 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	SKY1	Q03656	742 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	CRF1	Q04930	467 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	RIO1	Q12196	484 aa	Known RBP	4.66	□□□□□ -1.66
CDC48	YDL126C	ARP7	Q12406	477 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	RMP1	Q12530	201 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	NBL1	Q3E7Y6	73 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	REP1	P03871	373 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	MER1	P16523	270 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	SEN2	P16658	377 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	ADP1	P25371	1049 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	KAR9	P32526	644 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	YKL063C	P35725	167 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	YBL028C	P38202	106 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	ALG14	P38242	237 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	YBR138C	P38277	524 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	ETP1	P38748	585 aa	Known RBP	4.66	□□□□□ -1.66
CDC48	YDL126C	RRM3	P38766	723 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	PCI8	P40512	444 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	RLP7	P40693	322 aa	Known RBP	4.66	□□□□□ -1.66
CDC48	YDL126C	AIP1	P46680	615 aa	Known RBP	4.66	□□□□□ -1.66
CDC48	YDL126C	SHE10	P53075	577 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	MFB1	Q04922	465 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	PSY3	Q12318	242 aa		4.66	□□□□□ -1.66
CDC48	YDL126C	RPL22A	P05749	121 aa	Known RBP	4.65	□□□□□ -1.66
CDC48	YDL126C	YJU2	P28320	278 aa	Predicted RBP	4.65	□□□□□ -1.66
CDC48	YDL126C	YPT7	P32939	208 aa		4.65	□□□□□ -1.66
CDC48	YDL126C	SIF2	P38262	535 aa		4.65	□□□□□ -1.66
CDC48	YDL126C	SRP72	P38688	640 aa	Known RBP	4.65	□□□□□ -1.66
CDC48	YDL126C	OTU2	P38747	307 aa	Known RBP	4.65	□□□□□ -1.66
CDC48	YDL126C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.66	RIP-Chip
CDC48	YDL126C	PIK1	P39104	1066 aa		4.65	□□□□□ -1.66
CDC48	YDL126C	IRC5	P43610	853 aa		4.65	□□□□□ -1.66
CDC48	YDL126C	YPL107W	Q02873	248 aa		4.65	□□□□□ -1.66
CDC48	YDL126C	RSM28	Q03430	361 aa		4.65	□□□□□ -1.66
CDC48	YDL126C	YDR514C	Q04408	483 aa		4.65	□□□□□ -1.66
CDC48	YDL126C	KRE28	Q04431	385 aa		4.65	□□□□□ -1.66
CDC48	YDL126C	PEX15	Q08215	383 aa		4.65	□□□□□ -1.66
CDC48	YDL126C	BUD7	Q08754	746 aa		4.65	□□□□□ -1.66
CDC48	YDL126C	RTC5	Q12108	567 aa	Known RBP	4.65	□□□□□ -1.66
CDC48	YDL126C	IES3	Q12345	250 aa		4.65	□□□□□ -1.66
CDC48	YDL126C	ADE3	P07245	946 aa	Known RBP	4.65	□□□□□ -1.67
CDC48	YDL126C	RPC40	P07703	335 aa	Known RBP	4.65	□□□□□ -1.67
CDC48	YDL126C	MIS1	P09440	975 aa	Known RBP	4.65	□□□□□ -1.67
CDC48	YDL126C	PFK1	P16861	987 aa	Known RBP	4.65	□□□□□ -1.67
CDC48	YDL126C	PRE8	P23639	250 aa		4.65	□□□□□ -1.67
CDC48	YDL126C	MCM3	P24279	971 aa	Known RBP	4.65	□□□□□ -1.67
CDC48	YDL126C	YCL049C	P25577	312 aa		4.65	□□□□□ -1.67
CDC48	YDL126C	URA7	P28274	579 aa	Known RBP	4.65	□□□□□ -1.67
CDC48	YDL126C	MCM4	P30665	933 aa	Known RBP	4.65	□□□□□ -1.67
CDC48	YDL126C	CYS3	P31373	394 aa	Known RBP	4.65	□□□□□ -1.67
CDC48	YDL126C	TEF4	P36008	412 aa	Known RBP	4.65	□□□□□ -1.67
CDC48	YDL126C	SMC2	P38989	1170 aa	Known RBP	4.65	□□□□□ -1.67
CDC48	YDL126C	YER010C	P40011	234 aa		4.65	□□□□□ -1.67
CDC48	YDL126C	FTR1	P40088	404 aa		4.65	□□□□□ -1.67
CDC48	YDL126C	SYG1	P40528	902 aa		4.65	□□□□□ -1.67
CDC48	YDL126C	BNA2	P47125	453 aa		4.65	□□□□□ -1.67
CDC48	YDL126C	YGL138C	P53122	345 aa		4.65	□□□□□ -1.67
CDC48	YDL126C	CUE3	P53137	624 aa	Known RBP	4.65	□□□□□ -1.67
CDC48	YDL126C	RPN14	P53196	417 aa		4.65	□□□□□ -1.67
CDC48	YDL126C	OMS1	Q06668	471 aa		4.65	□□□□□ -1.67
CDC48	YDL126C	YPL225W	Q08971	146 aa	Known RBP	4.65	□□□□□ -1.67
CDC48	YDL126C	SES1	P07284	462 aa	Known RBP	4.64	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms