RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 SLC26A6Q9BXS9 759 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 DNAJC25Q9H1X3 360 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 FOXP1Q9H334 677 aaPredicted RBP12.23□□□□□ -0.45
ZNF540-208ENST00000589857 ATP8A2Q9NTI2 1148 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 ZSWIM5Q9P217 1185 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 ABCF2Q9UG63 623 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 MINPP1Q9UNW1 487 aa12.23□□□□□ -0.45
ZNF540-208ENST00000589857 DDAH1O94760 285 aa12.22□□□□□ -0.45
ZNF540-208ENST00000589857 POLR3DP05423 398 aaPredicted RBP12.22□□□□□ -0.45
ZNF540-208ENST00000589857 HIBADHP31937 336 aaKnown RBP12.22□□□□□ -0.45
ZNF540-208ENST00000589857 GSTO1P78417 241 aa12.22□□□□□ -0.45
ZNF540-208ENST00000589857 CTDSPL2Q05D32 466 aa12.22□□□□□ -0.45
ZNF540-208ENST00000589857 NTRK3Q16288 839 aa12.22□□□□□ -0.45
ZNF540-208ENST00000589857 CRY2Q49AN0 593 aa12.22□□□□□ -0.45
ZNF540-208ENST00000589857 RRP12Q5JTH9 1297 aaKnown RBP12.22□□□□□ -0.45
ZNF540-208ENST00000589857 DNTTIP2Q5QJE6 756 aaKnown RBP12.22□□□□□ -0.45
ZNF540-208ENST00000589857 CATIPQ7Z7H3 387 aa12.22□□□□□ -0.45
ZNF540-208ENST00000589857 LUZP1Q86V48 1076 aa12.22□□□□□ -0.45
ZNF540-208ENST00000589857 PLA2G4DQ86XP0 818 aa12.22□□□□□ -0.45
ZNF540-208ENST00000589857 AMOTL1Q8IY63 956 aa12.22□□□□□ -0.45
ZNF540-208ENST00000589857 RNF26Q9BY78 433 aaPredicted RBP12.22□□□□□ -0.45
ZNF540-208ENST00000589857 GOLPH3LQ9H4A5 285 aa12.22□□□□□ -0.45
ZNF540-208ENST00000589857 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.22□□□□□ -0.45
ZNF540-208ENST00000589857 ADARB2Q9NS39 739 aaKnown RBP12.22□□□□□ -0.45
ZNF540-208ENST00000589857 SPTLC3Q9NUV7 552 aa12.22□□□□□ -0.45
ZNF540-208ENST00000589857 ARPP21Q9UBL0 812 aaPredicted RBP12.22□□□□□ -0.45
ZNF540-208ENST00000589857 TLL2Q9Y6L7 1015 aa12.22□□□□□ -0.45
ZNF540-208ENST00000589857 SLX4Q8IY92 1834 aa12.22□□□□□ -0.45
ZNF540-208ENST00000589857 DOCK2Q92608 1830 aa12.22□□□□□ -0.45
ZNF540-208ENST00000589857 DDX60Q8IY21 1712 aaKnown RBP12.22□□□□□ -0.45
ZNF540-208ENST00000589857 AKAP11Q9UKA4 1901 aa12.21□□□□□ -0.45
ZNF540-208ENST00000589857 ANKRD31Q8N7Z5 1873 aa12.21□□□□□ -0.45
ZNF540-208ENST00000589857 FAM237AA0A1B0GTK4 181 aa12.21□□□□□ -0.45
ZNF540-208ENST00000589857 NOLC1Q14978 699 aaKnown RBP eCLIP12.21□□□□□ -0.45
ZNF540-208ENST00000589857 NOSTRINQ8IVI9 506 aa12.21□□□□□ -0.45
ZNF540-208ENST00000589857 ZNF654Q8IZM8 581 aa12.21□□□□□ -0.45
ZNF540-208ENST00000589857 CRAMP1Q96RY5 1269 aa12.21□□□□□ -0.45
ZNF540-208ENST00000589857 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.21□□□□□ -0.45
ZNF540-208ENST00000589857 FAM13BQ9NYF5 915 aa12.21□□□□□ -0.45
ZNF540-208ENST00000589857 KIAA1468Q9P260 1216 aa12.21□□□□□ -0.45
ZNF540-208ENST00000589857 LEMD3Q9Y2U8 911 aa12.21□□□□□ -0.45
ZNF540-208ENST00000589857 CLIC4Q9Y696 253 aa12.21□□□□□ -0.45
ZNF540-208ENST00000589857 ORC4O43929 436 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 MMP1P03956 469 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 CDC27P30260 824 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 HOXA10P31260 410 aaPredicted RBP12.2□□□□□ -0.46
ZNF540-208ENST00000589857 SYKP43405 635 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 GYG1P46976 350 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 GSDMDP57764 484 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 NLRP12P59046 1061 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 PDE4BQ07343 736 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 TNIP1Q15025 636 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 IQCB1Q15051 598 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 CYP4F22Q6NT55 531 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 KANK3Q6NY19 840 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 MTERF4Q7Z6M4 381 aaKnown RBP12.2□□□□□ -0.46
ZNF540-208ENST00000589857 KRI1Q8N9T8 703 aaKnown RBP12.2□□□□□ -0.46
ZNF540-208ENST00000589857 MIGA1Q8NAN2 632 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 FANCBQ8NB91 859 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 WDR66Q8TBY9 1149 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 ZC3H15Q8WU90 426 aaKnown RBP12.2□□□□□ -0.46
ZNF540-208ENST00000589857 FAM84BQ96KN1 310 aaPredicted RBP12.2□□□□□ -0.46
ZNF540-208ENST00000589857 RIOK1Q9BRS2 568 aaKnown RBP12.2□□□□□ -0.46
ZNF540-208ENST00000589857 CLIP2Q9UDT6 1046 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 DACH1Q9UI36 760 aa12.2□□□□□ -0.46
ZNF540-208ENST00000589857 COL11A2P13942 1736 aaPredicted RBP12.2□□□□□ -0.46
ZNF540-208ENST00000589857 MINDY4BA8MYZ0 360 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 KIF28PB7ZC32 967 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 PPEF1O14829 653 aaPredicted RBP12.19□□□□□ -0.46
ZNF540-208ENST00000589857 PPIP5K2O43314 1243 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 PRKAB2O43741 272 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 ZNF202O95125 648 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 LDHCP07864 332 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 FGRP09769 529 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 PFKFB1P16118 471 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 EPS15P42566 896 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 NDUFA8P51970 172 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 SBK1Q52WX2 424 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 IFIT1BQ5T764 474 aaKnown RBP12.19□□□□□ -0.46
ZNF540-208ENST00000589857 OTUD7BQ6GQQ9 843 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 FAM177A1Q8N128 213 aaPredicted RBP12.19□□□□□ -0.46
ZNF540-208ENST00000589857 CRACR2BQ8N4Y2 399 aaPredicted RBP12.19□□□□□ -0.46
ZNF540-208ENST00000589857 PHKBQ93100 1093 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 ZSCAN10Q96SZ4 725 aaPredicted RBP12.19□□□□□ -0.46
ZNF540-208ENST00000589857 MAP7D2Q96T17 732 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 PYM1Q9BRP8 204 aaKnown RBP12.19□□□□□ -0.46
ZNF540-208ENST00000589857 FTOQ9C0B1 505 aaKnown RBP eCLIP12.19□□□□□ -0.46
ZNF540-208ENST00000589857 ZNF287Q9HBT7 754 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 IMPACTQ9P2X3 320 aa12.19□□□□□ -0.46
ZNF540-208ENST00000589857 R3HCC1Q9Y3T6 440 aaKnown RBP12.19□□□□□ -0.46
ZNF540-208ENST00000589857 DUOX1Q9NRD9 1551 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 TNKSO95271 1327 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 A0A1B0GVL5 298 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 DYNC1I1O14576 645 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 IKBKBO14920 756 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 CBFA2T2O43439 604 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 RANBP6O60518 1105 aaKnown RBP12.18□□□□□ -0.46
ZNF540-208ENST00000589857 CELF2O95319 508 aaKnown RBP12.18□□□□□ -0.46
ZNF540-208ENST00000589857 BAG3O95817 575 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 KIF5BP33176 963 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms