RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 SRGNP10124 158 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 SMIM5Q71RC9 77 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.3□□□□□ -1.08
VPS53-217ENST00000575100 THAP3Q8WTV1 239 aaPredicted RBP8.3□□□□□ -1.08
VPS53-217ENST00000575100 GPKOWQ92917 476 aaPredicted RBP eCLIP8.3□□□□□ -1.08
VPS53-217ENST00000575100 ASPSCR1Q9BZE9 553 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 MUC3BQ9H195 1237 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 ATG3Q9NT62 314 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 MCM8Q9UJA3 840 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 ASAP1Q9ULH1 1129 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 TJP1Q07157 1748 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 MYL3P08590 195 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 VARSP26640 1264 aaKnown RBP8.3□□□□□ -1.08
VPS53-217ENST00000575100 TGFB2P61812 414 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 DDR2Q16832 855 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 TWISTNBQ3B726 338 aaPredicted RBP8.3□□□□□ -1.08
VPS53-217ENST00000575100 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.3□□□□□ -1.08
VPS53-217ENST00000575100 FAM83BQ5T0W9 1011 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 RC3H1Q5TC82 1133 aaKnown RBP8.3□□□□□ -1.08
VPS53-217ENST00000575100 GET4Q7L5D6 327 aaPredicted RBP8.3□□□□□ -1.08
VPS53-217ENST00000575100 SCG3Q8WXD2 468 aaKnown RBP8.3□□□□□ -1.08
VPS53-217ENST00000575100 SSH1Q8WYL5 1049 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 RBSNQ9H1K0 784 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 CNTNAP4Q9C0A0 1308 aa8.29□□□□□ -1.08
VPS53-217ENST00000575100 WDR90Q96KV7 1748 aa8.29□□□□□ -1.08
VPS53-217ENST00000575100 TRIM6-TRIM34B2RNG4 842 aa8.29□□□□□ -1.08
VPS53-217ENST00000575100 POTEB2H3BUK9 544 aa8.29□□□□□ -1.08
VPS53-217ENST00000575100 ASMTLO95671 621 aa8.29□□□□□ -1.08
VPS53-217ENST00000575100 HSP90AB1P08238 724 aaKnown RBP8.29□□□□□ -1.08
VPS53-217ENST00000575100 MMP10P09238 476 aa8.29□□□□□ -1.08
VPS53-217ENST00000575100 RRP1P56182 461 aaKnown RBP8.29□□□□□ -1.08
VPS53-217ENST00000575100 CABP4P57796 275 aa8.29□□□□□ -1.08
VPS53-217ENST00000575100 EIF4A1P60842 406 aaKnown RBP8.29□□□□□ -1.08
VPS53-217ENST00000575100 FAM26DQ5JW98 314 aa8.29□□□□□ -1.08
VPS53-217ENST00000575100 C20orf194Q5TEA3 1177 aa8.29□□□□□ -1.08
VPS53-217ENST00000575100 SLC4A10Q6U841 1118 aa8.29□□□□□ -1.08
VPS53-217ENST00000575100 ANAPC16Q96DE5 110 aa8.29□□□□□ -1.08
VPS53-217ENST00000575100 EAF1Q96JC9 268 aaPredicted RBP8.29□□□□□ -1.08
VPS53-217ENST00000575100 CDH19Q9H159 772 aa8.29□□□□□ -1.08
VPS53-217ENST00000575100 ZNF358Q9NW07 568 aa8.29□□□□□ -1.08
VPS53-217ENST00000575100 TNNQ9UQP3 1299 aa8.29□□□□□ -1.08
VPS53-217ENST00000575100 SBF1O95248 1867 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 ERVV-2B6SEH9 535 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 GIPC1O14908 333 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 NEK2P51955 445 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 USP4Q13107 963 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 COL9A2Q14055 689 aaPredicted RBP8.28□□□□□ -1.08
VPS53-217ENST00000575100 NXNQ6DKJ4 435 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 ZNF790Q6PG37 636 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 PACS2Q86VP3 889 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 FTSJ3Q8IY81 847 aaKnown RBP8.28□□□□□ -1.08
VPS53-217ENST00000575100 DNAJC25Q9H1X3 360 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 CAAP1Q9H8G2 361 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 HEG1Q9ULI3 1381 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 A0A087X0B3 334 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 CASP2P42575 452 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 NFKB2Q00653 900 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 CCDC70Q6NSX1 233 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 POTEEQ6S8J3 1075 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 TCEAL8Q8IYN2 117 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 ZNF496Q96IT1 587 aaPredicted RBP8.28□□□□□ -1.08
VPS53-217ENST00000575100 SLC4A9Q96Q91 983 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 BABAM1Q9NWV8 329 aa8.28□□□□□ -1.08
VPS53-217ENST00000575100 TNRC6CQ9HCJ0 1690 aaKnown RBP8.28□□□□□ -1.08
VPS53-217ENST00000575100 DLEC1Q9Y238 1755 aa8.27□□□□□ -1.09
VPS53-217ENST00000575100 SLC26A4O43511 780 aa8.27□□□□□ -1.09
VPS53-217ENST00000575100 RNASEH2AO75792 299 aaKnown RBP8.27□□□□□ -1.09
VPS53-217ENST00000575100 TRAPPC3LQ5T215 181 aa8.27□□□□□ -1.09
VPS53-217ENST00000575100 FAM8A1Q9UBU6 413 aa8.27□□□□□ -1.09
VPS53-217ENST00000575100 RTCBQ9Y3I0 505 aaKnown RBP8.27□□□□□ -1.09
VPS53-217ENST00000575100 PTCH2Q9Y6C5 1203 aa8.27□□□□□ -1.09
VPS53-217ENST00000575100 KCPQ6ZWJ8 1503 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 SMAD7O15105 426 aaKnown RBP8.26□□□□□ -1.09
VPS53-217ENST00000575100 RPS6KA4O75676 772 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 F2P00734 622 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 TNNI3KQ59H18 835 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 DGKHQ86XP1 1220 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 MFSD3Q96ES6 412 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 SHDQ96IW2 340 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 NGRNQ9NPE2 291 aaKnown RBP8.26□□□□□ -1.09
VPS53-217ENST00000575100 SMC4Q9NTJ3 1288 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 FRMD4BQ9Y2L6 1034 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 NRXN2Q9P2S2 1712 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 CT47B1P0C2W7 299 aaPredicted RBP8.26□□□□□ -1.09
VPS53-217ENST00000575100 MYCLP1P12525 358 aaPredicted RBP8.26□□□□□ -1.09
VPS53-217ENST00000575100 GYS1P13807 737 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 SWT1Q5T5J6 900 aaKnown RBP8.26□□□□□ -1.09
VPS53-217ENST00000575100 KANK3Q6NY19 840 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 RNF180Q86T96 592 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 CREBRFQ8IUR6 639 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 MRPL50Q8N5N7 158 aaKnown RBP8.26□□□□□ -1.09
VPS53-217ENST00000575100 FRAT1Q92837 279 aaPredicted RBP8.26□□□□□ -1.09
VPS53-217ENST00000575100 RSRP1Q9BUV0 290 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 IFT122Q9HBG6 1241 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 LUZP4Q9P127 313 aa8.26□□□□□ -1.09
VPS53-217ENST00000575100 AFDNP55196 1824 aaKnown RBP8.25□□□□□ -1.09
VPS53-217ENST00000575100 TCEA3O75764 348 aa8.25□□□□□ -1.09
VPS53-217ENST00000575100 TOMM70O94826 608 aa8.25□□□□□ -1.09
VPS53-217ENST00000575100 GUCY2FP51841 1108 aa8.25□□□□□ -1.09
VPS53-217ENST00000575100 ALFQ53S48 1182 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms