RNA–Protein interactions for RNA: ENST00000553491.5

ATXN3-220, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 857 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-220ENST00000553491 SPG7Q9UQ90 795 aa6.6□□□□□ -1.35
ATXN3-220ENST00000553491 ROBO1Q9Y6N7 1651 aa6.6□□□□□ -1.35
ATXN3-220ENST00000553491 IQSEC2Q5JU85 1478 aa6.6□□□□□ -1.35
ATXN3-220ENST00000553491 NALCNQ8IZF0 1738 aa6.59□□□□□ -1.35
ATXN3-220ENST00000553491 TONSLQ96HA7 1378 aa6.59□□□□□ -1.35
ATXN3-220ENST00000553491 PIK3R4Q99570 1358 aa6.59□□□□□ -1.35
ATXN3-220ENST00000553491 ZNF157P51786 506 aaPredicted RBP6.59□□□□□ -1.35
ATXN3-220ENST00000553491 RNF43Q68DV7 783 aa6.59□□□□□ -1.35
ATXN3-220ENST00000553491 CDPF1Q6NVV7 123 aa6.59□□□□□ -1.35
ATXN3-220ENST00000553491 DTHD1Q6ZMT9 781 aa6.59□□□□□ -1.35
ATXN3-220ENST00000553491 ZDHHC13Q8IUH4 622 aa6.59□□□□□ -1.35
ATXN3-220ENST00000553491 HIRIP3Q9BW71 556 aaPredicted RBP6.59□□□□□ -1.35
ATXN3-220ENST00000553491 GSX1Q9H4S2 264 aaPredicted RBP6.59□□□□□ -1.35
ATXN3-220ENST00000553491 NWD1Q149M9 1564 aa6.59□□□□□ -1.35
ATXN3-220ENST00000553491 XRN1Q8IZH2 1706 aaKnown RBP6.59□□□□□ -1.36
ATXN3-220ENST00000553491 LAMC1P11047 1609 aa6.58□□□□□ -1.36
ATXN3-220ENST00000553491 SYNGAP1Q96PV0 1343 aa6.58□□□□□ -1.36
ATXN3-220ENST00000553491 PRR19A6NJB7 356 aa6.58□□□□□ -1.36
ATXN3-220ENST00000553491 GSC2O15499 205 aa6.58□□□□□ -1.36
ATXN3-220ENST00000553491 HYAL3O43820 417 aaPredicted RBP6.58□□□□□ -1.36
ATXN3-220ENST00000553491 CTSHP09668 335 aa6.58□□□□□ -1.36
ATXN3-220ENST00000553491 ADH5P11766 374 aa6.58□□□□□ -1.36
ATXN3-220ENST00000553491 XRCC5P13010 732 aaKnown RBP6.58□□□□□ -1.36
ATXN3-220ENST00000553491 TCF3P15923 654 aa6.58□□□□□ -1.36
ATXN3-220ENST00000553491 MAP4P27816 1152 aaKnown RBP6.58□□□□□ -1.36
ATXN3-220ENST00000553491 AP3B2Q13367 1082 aa6.58□□□□□ -1.36
ATXN3-220ENST00000553491 LRP8Q14114 963 aa6.58□□□□□ -1.36
ATXN3-220ENST00000553491 PDZD3Q86UT5 571 aa6.58□□□□□ -1.36
ATXN3-220ENST00000553491 STK35Q8TDR2 534 aa6.58□□□□□ -1.36
ATXN3-220ENST00000553491 EZH1Q92800 747 aaPredicted RBP6.58□□□□□ -1.36
ATXN3-220ENST00000553491 WDR89Q96FK6 387 aaPredicted RBP6.58□□□□□ -1.36
ATXN3-220ENST00000553491 PSMG3-AS1Q96PY0 264 aa6.58□□□□□ -1.36
ATXN3-220ENST00000553491 PRAM1Q96QH2 718 aa6.58□□□□□ -1.36
ATXN3-220ENST00000553491 ZFYVE1Q9HBF4 777 aa6.58□□□□□ -1.36
ATXN3-220ENST00000553491 NKTRP30414 1462 aaKnown RBP6.58□□□□□ -1.36
ATXN3-220ENST00000553491 GIPC1O14908 333 aa6.57□□□□□ -1.36
ATXN3-220ENST00000553491 ZNF862O60290 1169 aa6.57□□□□□ -1.36
ATXN3-220ENST00000553491 MED26O95402 600 aa6.57□□□□□ -1.36
ATXN3-220ENST00000553491 EIF4BP23588 611 aaKnown RBP6.57□□□□□ -1.36
ATXN3-220ENST00000553491 DDX54Q8TDD1 881 aaKnown RBP6.57□□□□□ -1.36
ATXN3-220ENST00000553491 DDX17Q92841 729 aaKnown RBP6.57□□□□□ -1.36
ATXN3-220ENST00000553491 DBNDD2Q9BQY9 259 aa6.57□□□□□ -1.36
ATXN3-220ENST00000553491 CORO1BQ9BR76 489 aa6.57□□□□□ -1.36
ATXN3-220ENST00000553491 WDR18Q9BV38 432 aa6.57□□□□□ -1.36
ATXN3-220ENST00000553491 KCNF1Q9H3M0 494 aa6.57□□□□□ -1.36
ATXN3-220ENST00000553491 CCDC86Q9H6F5 360 aaKnown RBP6.57□□□□□ -1.36
ATXN3-220ENST00000553491 C12orf49Q9H741 205 aa6.57□□□□□ -1.36
ATXN3-220ENST00000553491 PPP4R2Q9NY27 417 aa6.57□□□□□ -1.36
ATXN3-220ENST00000553491 ACTL7BQ9Y614 415 aa6.57□□□□□ -1.36
ATXN3-220ENST00000553491 YTHDC2Q9H6S0 1430 aaKnown RBP6.57□□□□□ -1.36
ATXN3-220ENST00000553491 ROBO2Q9HCK4 1378 aa6.57□□□□□ -1.36
ATXN3-220ENST00000553491 KNDC1Q76NI1 1749 aa6.56□□□□□ -1.36
ATXN3-220ENST00000553491 GAS2O43903 313 aaKnown RBP6.56□□□□□ -1.36
ATXN3-220ENST00000553491 AOC2O75106 756 aa6.56□□□□□ -1.36
ATXN3-220ENST00000553491 SHISA5Q8N114 240 aa6.56□□□□□ -1.36
ATXN3-220ENST00000553491 TMEM87AQ8NBN3 555 aa6.56□□□□□ -1.36
ATXN3-220ENST00000553491 ANKRD24Q8TF21 1146 aa6.56□□□□□ -1.36
ATXN3-220ENST00000553491 FBLIM1Q8WUP2 373 aa6.56□□□□□ -1.36
ATXN3-220ENST00000553491 ORAI2Q96SN7 254 aa6.56□□□□□ -1.36
ATXN3-220ENST00000553491 ZFP64Q9NPA5 681 aa6.56□□□□□ -1.36
ATXN3-220ENST00000553491 TMEM39AQ9NV64 488 aa6.56□□□□□ -1.36
ATXN3-220ENST00000553491 PCDHGC5Q9Y5F6 944 aa6.56□□□□□ -1.36
ATXN3-220ENST00000553491 PIK3C2GO75747 1445 aa6.56□□□□□ -1.36
ATXN3-220ENST00000553491 KIAA1210Q9ULL0 1709 aa6.56□□□□□ -1.36
ATXN3-220ENST00000553491 LRPPRCP42704 1394 aaKnown RBP6.56□□□□□ -1.36
ATXN3-220ENST00000553491 MYOM2P54296 1465 aa6.55□□□□□ -1.36
ATXN3-220ENST00000553491 SCAMP3O14828 347 aaKnown RBP6.55□□□□□ -1.36
ATXN3-220ENST00000553491 TGFB1P01137 390 aa6.55□□□□□ -1.36
ATXN3-220ENST00000553491 CD97P48960 835 aa6.55□□□□□ -1.36
ATXN3-220ENST00000553491 MEX3CQ5U5Q3 659 aaKnown RBP6.55□□□□□ -1.36
ATXN3-220ENST00000553491 KRTAP1-3Q8IUG1 177 aa6.55□□□□□ -1.36
ATXN3-220ENST00000553491 NECAB3Q96P71 396 aaPredicted RBP6.55□□□□□ -1.36
ATXN3-220ENST00000553491 SRCIN1Q9C0H9 1055 aa6.55□□□□□ -1.36
ATXN3-220ENST00000553491 FAM105AQ9NUU6 356 aa6.55□□□□□ -1.36
ATXN3-220ENST00000553491 CACNA2D2Q9NY47 1150 aa6.55□□□□□ -1.36
ATXN3-220ENST00000553491 PPP1R9AQ9ULJ8 1098 aa6.55□□□□□ -1.36
ATXN3-220ENST00000553491 ARHGEF28Q8N1W1 1705 aaKnown RBP6.55□□□□□ -1.36
ATXN3-220ENST00000553491 PLEKHH1Q9ULM0 1364 aa6.55□□□□□ -1.36
ATXN3-220ENST00000553491 SCO2A0A1W2PP80 73 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 GSTP1P09211 210 aaKnown RBP6.54□□□□□ -1.36
ATXN3-220ENST00000553491 USP17L7P0C7H9 530 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 LIG1P18858 919 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 HDLBPQ00341 1268 aaKnown RBP6.54□□□□□ -1.36
ATXN3-220ENST00000553491 NBPF8Q3BBV2 869 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 AKAP4Q5JQC9 854 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 HP1BP3Q5SSJ5 553 aaPredicted RBP6.54□□□□□ -1.36
ATXN3-220ENST00000553491 SEZ6L2Q6UXD5 910 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 PMFBP1Q8TBY8 1022 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 GATA6Q92908 595 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 CRELD1Q96HD1 420 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 CARD11Q9BXL7 1154 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 ACSS3Q9H6R3 686 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 KRT82Q9NSB4 513 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 FAM8A1Q9UBU6 413 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 AKAP2Q9Y2D5 859 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 ABCC11Q96J66 1382 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 DISP3Q9P2K9 1392 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 TRPM1Q7Z4N2 1603 aa6.54□□□□□ -1.36
ATXN3-220ENST00000553491 FMN2Q9NZ56 1722 aa6.53□□□□□ -1.36
ATXN3-220ENST00000553491 NCOA3Q9Y6Q9 1424 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms