RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 GTF2IP78347 998 aa17.79■□□□□ 0.44
SCARF1-203ENST00000434376 CCAR2Q8N163 923 aaKnown RBP17.79■□□□□ 0.44
SCARF1-203ENST00000434376 SHISA4Q96DD7 197 aa17.79■□□□□ 0.44
SCARF1-203ENST00000434376 TJP1Q07157 1748 aa17.79■□□□□ 0.44
SCARF1-203ENST00000434376 TRIM75PA6NK02 468 aa17.79■□□□□ 0.44
SCARF1-203ENST00000434376 XBP1P17861 261 aa17.79■□□□□ 0.44
SCARF1-203ENST00000434376 SFPQP23246 707 aaKnown RBP eCLIP17.79■□□□□ 0.44
SCARF1-203ENST00000434376 CRYBG1Q9Y4K1 1723 aa17.79■□□□□ 0.44
SCARF1-203ENST00000434376 ADKP55263 362 aaKnown RBP17.78■□□□□ 0.44
SCARF1-203ENST00000434376 EVCP57679 992 aa17.78■□□□□ 0.44
SCARF1-203ENST00000434376 PTPAQ15257 358 aa17.78■□□□□ 0.44
SCARF1-203ENST00000434376 SGMS1Q86VZ5 419 aa17.78■□□□□ 0.44
SCARF1-203ENST00000434376 COL4A1P02462 1669 aa17.78■□□□□ 0.44
SCARF1-203ENST00000434376 RBM5P52756 815 aaKnown RBP eCLIP17.78■□□□□ 0.44
SCARF1-203ENST00000434376 SAMSN1Q9NSI8 373 aaKnown RBP17.78■□□□□ 0.44
SCARF1-203ENST00000434376 MPHOSPH10O00566 681 aaKnown RBP17.78■□□□□ 0.44
SCARF1-203ENST00000434376 PTGDRQ13258 359 aa17.78■□□□□ 0.44
SCARF1-203ENST00000434376 THRAP3Q9Y2W1 955 aaKnown RBP17.78■□□□□ 0.44
SCARF1-203ENST00000434376 MFSD14BQ5SR56 506 aa17.77■□□□□ 0.44
SCARF1-203ENST00000434376 KRBA2Q6ZNG9 492 aa17.77■□□□□ 0.44
SCARF1-203ENST00000434376 WASF1Q92558 559 aa17.77■□□□□ 0.44
SCARF1-203ENST00000434376 NFE2L3Q9Y4A8 694 aa17.77■□□□□ 0.44
SCARF1-203ENST00000434376 FRMPD2Q68DX3 1309 aaPredicted RBP17.77■□□□□ 0.44
SCARF1-203ENST00000434376 NLRP12P59046 1061 aa17.77■□□□□ 0.44
SCARF1-203ENST00000434376 TCP10Q12799 353 aa17.77■□□□□ 0.44
SCARF1-203ENST00000434376 USP17L2Q6R6M4 530 aa17.77■□□□□ 0.44
SCARF1-203ENST00000434376 SMARCE1Q969G3 411 aa17.77■□□□□ 0.44
SCARF1-203ENST00000434376 FEZ1Q99689 392 aa17.77■□□□□ 0.44
SCARF1-203ENST00000434376 KRT2P35908 639 aa17.77■□□□□ 0.43
SCARF1-203ENST00000434376 CCT6AP40227 531 aaKnown RBP17.77■□□□□ 0.43
SCARF1-203ENST00000434376 SYMPKQ92797 1274 aaKnown RBP17.77■□□□□ 0.43
SCARF1-203ENST00000434376 ZNF622Q969S3 477 aaKnown RBP eCLIP17.77■□□□□ 0.43
SCARF1-203ENST00000434376 ZNF512BQ96KM6 892 aaPredicted RBP17.77■□□□□ 0.43
SCARF1-203ENST00000434376 NYXQ9GZU5 481 aa17.77■□□□□ 0.43
SCARF1-203ENST00000434376 SF3B3Q15393 1217 aaKnown RBP17.76■□□□□ 0.43
SCARF1-203ENST00000434376 CLEC4GQ6UXB4 293 aa17.76■□□□□ 0.43
SCARF1-203ENST00000434376 MAP3K14Q99558 947 aa17.76■□□□□ 0.43
SCARF1-203ENST00000434376 ZSWIM4Q9H7M6 989 aa17.76■□□□□ 0.43
SCARF1-203ENST00000434376 ROBO1Q9Y6N7 1651 aa17.76■□□□□ 0.43
SCARF1-203ENST00000434376 COL1A1P02452 1464 aaPredicted RBP17.76■□□□□ 0.43
SCARF1-203ENST00000434376 A0A1W2PQ27 194 aa17.76■□□□□ 0.43
SCARF1-203ENST00000434376 A0A1W2PQ64 194 aa17.76■□□□□ 0.43
SCARF1-203ENST00000434376 A0A1W2PQD8 194 aa17.76■□□□□ 0.43
SCARF1-203ENST00000434376 GPSM2P81274 684 aa17.76■□□□□ 0.43
SCARF1-203ENST00000434376 FMR1Q06787 632 aaKnown RBP eCLIP17.76■□□□□ 0.43
SCARF1-203ENST00000434376 RBM43Q6ZSC3 357 aaKnown RBP17.76■□□□□ 0.43
SCARF1-203ENST00000434376 PNMA1Q8ND90 353 aa17.76■□□□□ 0.43
SCARF1-203ENST00000434376 FAM170AA1A519 330 aa17.75■□□□□ 0.43
SCARF1-203ENST00000434376 CTIFO43310 598 aaKnown RBP17.75■□□□□ 0.43
SCARF1-203ENST00000434376 POSTNQ15063 836 aa17.75■□□□□ 0.43
SCARF1-203ENST00000434376 TEX11Q8IYF3 940 aa17.75■□□□□ 0.43
SCARF1-203ENST00000434376 LRRC47Q8N1G4 583 aaKnown RBP17.75■□□□□ 0.43
SCARF1-203ENST00000434376 DESI2Q9BSY9 194 aa17.75■□□□□ 0.43
SCARF1-203ENST00000434376 ITGB4P16144 1822 aa17.75■□□□□ 0.43
SCARF1-203ENST00000434376 SYT10Q6XYQ8 523 aa17.75■□□□□ 0.43
SCARF1-203ENST00000434376 BRMS1Q9HCU9 246 aa17.75■□□□□ 0.43
SCARF1-203ENST00000434376 A0A087X0B3 334 aa17.75■□□□□ 0.43
SCARF1-203ENST00000434376 SERPINB2P05120 415 aa17.75■□□□□ 0.43
SCARF1-203ENST00000434376 BMP6P22004 513 aa17.75■□□□□ 0.43
SCARF1-203ENST00000434376 ALX1Q15699 326 aa17.75■□□□□ 0.43
SCARF1-203ENST00000434376 INF2Q27J81 1249 aa17.75■□□□□ 0.43
SCARF1-203ENST00000434376 BTDP43251 543 aa17.74■□□□□ 0.43
SCARF1-203ENST00000434376 AFF2P51816 1311 aa17.74■□□□□ 0.43
SCARF1-203ENST00000434376 NUP98P52948 1817 aa17.74■□□□□ 0.43
SCARF1-203ENST00000434376 TOP1P11387 765 aaKnown RBP17.74■□□□□ 0.43
SCARF1-203ENST00000434376 ZSCAN29Q8IWY8 852 aaPredicted RBP17.74■□□□□ 0.43
SCARF1-203ENST00000434376 GPCPD1Q9NPB8 672 aa17.74■□□□□ 0.43
SCARF1-203ENST00000434376 PAXBP1Q9Y5B6 917 aa17.74■□□□□ 0.43
SCARF1-203ENST00000434376 LAMA4Q16363 1823 aa17.74■□□□□ 0.43
SCARF1-203ENST00000434376 TROAPQ12815 778 aa17.74■□□□□ 0.43
SCARF1-203ENST00000434376 SEC23AQ15436 765 aa17.74■□□□□ 0.43
SCARF1-203ENST00000434376 PRR5LQ6MZQ0 368 aa17.74■□□□□ 0.43
SCARF1-203ENST00000434376 FBXO33Q7Z6M2 555 aa17.74■□□□□ 0.43
SCARF1-203ENST00000434376 AMOTL1Q8IY63 956 aa17.74■□□□□ 0.43
SCARF1-203ENST00000434376 KRT222Q8N1A0 295 aa17.74■□□□□ 0.43
SCARF1-203ENST00000434376 TMTC2Q8N394 836 aa17.74■□□□□ 0.43
SCARF1-203ENST00000434376 SCAF8Q9UPN6 1271 aaKnown RBP17.74■□□□□ 0.43
SCARF1-203ENST00000434376 CUTAO60888 179 aa17.73■□□□□ 0.43
SCARF1-203ENST00000434376 MYL5Q02045 173 aa17.73■□□□□ 0.43
SCARF1-203ENST00000434376 KARSQ15046 597 aaKnown RBP17.73■□□□□ 0.43
SCARF1-203ENST00000434376 PKN1Q16512 942 aa17.73■□□□□ 0.43
SCARF1-203ENST00000434376 RILPL1Q5EBL4 403 aa17.73■□□□□ 0.43
SCARF1-203ENST00000434376 TTC38Q5R3I4 469 aa17.73■□□□□ 0.43
SCARF1-203ENST00000434376 JAKMIP3Q5VZ66 844 aa17.73■□□□□ 0.43
SCARF1-203ENST00000434376 GJA10Q969M2 543 aa17.73■□□□□ 0.43
SCARF1-203ENST00000434376 HSPA1LP34931 641 aa17.73■□□□□ 0.43
SCARF1-203ENST00000434376 KMT5BQ4FZB7 885 aa17.73■□□□□ 0.43
SCARF1-203ENST00000434376 ATL3Q6DD88 541 aa17.73■□□□□ 0.43
SCARF1-203ENST00000434376 MAN1B1Q9UKM7 699 aa17.73■□□□□ 0.43
SCARF1-203ENST00000434376 PNPLA7Q6ZV29 1317 aa17.73■□□□□ 0.43
SCARF1-203ENST00000434376 POLR3GO15318 223 aaPredicted RBP17.72■□□□□ 0.43
SCARF1-203ENST00000434376 LETM2Q2VYF4 491 aa17.72■□□□□ 0.43
SCARF1-203ENST00000434376 ARMCX5Q6P1M9 558 aa17.72■□□□□ 0.43
SCARF1-203ENST00000434376 QTRT2Q9H974 415 aaKnown RBP17.72■□□□□ 0.43
SCARF1-203ENST00000434376 RESP18Q5W5W9 173 aa17.72■□□□□ 0.43
SCARF1-203ENST00000434376 KIF18AQ8NI77 898 aa17.72■□□□□ 0.43
SCARF1-203ENST00000434376 FBXO2Q9UK22 296 aaPredicted RBP17.72■□□□□ 0.43
SCARF1-203ENST00000434376 AKAP11Q9UKA4 1901 aa17.72■□□□□ 0.43
SCARF1-203ENST00000434376 LAMB4A4D0S4 1761 aa17.72■□□□□ 0.43
SCARF1-203ENST00000434376 CCDC194A0A1B0GVG4 234 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms