RNA–Protein interactions for RNA: YKL018W

SWD2, Transcript of Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex, yeast

Gene SWD2, Length 990 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWD2	YKL018W	YNR071C	P53757	342 aa		3.96	□□□□□ -1.78
SWD2	YKL018W	UBP16	Q02863	499 aa		3.96	□□□□□ -1.78
SWD2	YKL018W	RAD33	Q04231	177 aa		3.96	□□□□□ -1.78
SWD2	YKL018W	OPY2	Q06810	360 aa		3.96	□□□□□ -1.78
SWD2	YKL018W	PNO1	Q99216	274 aa	Known RBP	3.96	□□□□□ -1.78
SWD2	YKL018W	NUC1	P08466	329 aa		3.95	□□□□□ -1.78
SWD2	YKL018W	MIS1	P09440	975 aa	Known RBP	3.95	□□□□□ -1.78
SWD2	YKL018W	YMR085W	P0CF18	432 aa		3.95	□□□□□ -1.78
SWD2	YKL018W	POL3	P15436	1097 aa		3.95	□□□□□ -1.78
SWD2	YKL018W	RER1	P25560	188 aa		3.95	□□□□□ -1.78
SWD2	YKL018W	ECM32	P32644	1121 aa	Known RBP	3.95	□□□□□ -1.78
SWD2	YKL018W	XRS2	P33301	854 aa		3.95	□□□□□ -1.78
SWD2	YKL018W	STT3	P39007	718 aa	Known RBP	3.95	□□□□□ -1.78
SWD2	YKL018W	RAD26	P40352	1085 aa		3.95	□□□□□ -1.78
SWD2	YKL018W	PSF2	P40359	213 aa		3.95	□□□□□ -1.78
SWD2	YKL018W	GSM1	P42950	618 aa		3.95	□□□□□ -1.78
SWD2	YKL018W	CPR6	P53691	371 aa	Known RBP	3.95	□□□□□ -1.78
SWD2	YKL018W	ARC35	P53731	342 aa	Known RBP	3.95	□□□□□ -1.78
SWD2	YKL018W	MRPL13	Q02204	264 aa		3.95	□□□□□ -1.78
SWD2	YKL018W	TRI1	Q05024	226 aa		3.95	□□□□□ -1.78
SWD2	YKL018W	DIN7	Q12086	430 aa		3.95	□□□□□ -1.78
SWD2	YKL018W	MCM3	P24279	971 aa	Known RBP	3.94	□□□□□ -1.78
SWD2	YKL018W	CLB4	P24871	460 aa		3.94	□□□□□ -1.78
SWD2	YKL018W	YCL049C	P25577	312 aa		3.94	□□□□□ -1.78
SWD2	YKL018W	RPT3	P33298	428 aa	Known RBP	3.94	□□□□□ -1.78
SWD2	YKL018W	SLC1	P33333	303 aa		3.94	□□□□□ -1.78
SWD2	YKL018W	MRPL36	P36531	177 aa		3.94	□□□□□ -1.78
SWD2	YKL018W	KAP123	P40069	1113 aa	Known RBP	3.94	□□□□□ -1.78
SWD2	YKL018W	VFA1	P40080	203 aa		3.94	□□□□□ -1.78
SWD2	YKL018W	PUG1	P40100	303 aa		3.94	□□□□□ -1.78
SWD2	YKL018W	TMA108	P40462	946 aa		3.94	□□□□□ -1.78
SWD2	YKL018W	PCI8	P40512	444 aa		3.94	□□□□□ -1.78
SWD2	YKL018W	YIL024C	P40543	189 aa		3.94	□□□□□ -1.78
SWD2	YKL018W	SNU56	Q03782	492 aa	Known RBP	3.94	□□□□□ -1.78
SWD2	YKL018W	PLM2	Q04383	521 aa		3.94	□□□□□ -1.78
SWD2	YKL018W	IWR1	Q07532	353 aa	Predicted RBP	3.94	□□□□□ -1.78
SWD2	YKL018W	RRI2	Q12348	645 aa		3.94	□□□□□ -1.78
SWD2	YKL018W	YER175W-A	Q8TGU4	54 aa		3.94	□□□□□ -1.78
SWD2	YKL018W	YPR089W	O13585	888 aa		3.93	□□□□□ -1.78
SWD2	YKL018W	ILS1	P09436	1072 aa	Known RBP	3.93	□□□□□ -1.78
SWD2	YKL018W	SIR1	P21691	654 aa		3.93	□□□□□ -1.78
SWD2	YKL018W	YML119W	Q03208	357 aa		3.93	□□□□□ -1.78
SWD2	YKL018W	ARA2	Q04212	335 aa		3.93	□□□□□ -1.78
SWD2	YKL018W	MRPL1	Q04599	285 aa		3.93	□□□□□ -1.78
SWD2	YKL018W	YML053C	Q04978	212 aa		3.93	□□□□□ -1.78
SWD2	YKL018W	EIS1	Q05050	843 aa	Known RBP	3.93	□□□□□ -1.78
SWD2	YKL018W	CHO2	P05374	869 aa	Known RBP	3.92	□□□□□ -1.78
SWD2	YKL018W	MTF2	P10849	440 aa		3.92	□□□□□ -1.78
SWD2	YKL018W	NCP1	P16603	691 aa	Known RBP	3.92	□□□□□ -1.78
SWD2	YKL018W	RAD16	P31244	790 aa		3.92	□□□□□ -1.78
SWD2	YKL018W	RRN3	P36070	627 aa		3.92	□□□□□ -1.78
SWD2	YKL018W	FTH1	P38310	465 aa		3.92	□□□□□ -1.78
SWD2	YKL018W	FLO5	P38894	1075 aa		3.92	□□□□□ -1.78
SWD2	YKL018W	UME6	P39001	836 aa		3.92	□□□□□ -1.78
SWD2	YKL018W	MEP3	P53390	489 aa		3.92	□□□□□ -1.78
SWD2	YKL018W	YNL092W	P53934	400 aa		3.92	□□□□□ -1.78
SWD2	YKL018W	YPL068C	Q02749	293 aa		3.92	□□□□□ -1.78
SWD2	YKL018W	CRD1	Q07560	283 aa		3.92	□□□□□ -1.78
SWD2	YKL018W	AAD4	Q07747	329 aa		3.92	□□□□□ -1.78
SWD2	YKL018W	HER1	Q12276	1246 aa		3.92	□□□□□ -1.78
SWD2	YKL018W	YOL087C	Q99247	1116 aa		3.92	□□□□□ -1.78
SWD2	YKL018W	INH1	P01097	85 aa		3.91	□□□□□ -1.78
SWD2	YKL018W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	3.91	□□□□□ -1.78	not detected
SWD2	YKL018W	UBC1	P21734	215 aa	Known RBP	3.91	□□□□□ -1.78
SWD2	YKL018W	RIT1	P23796	513 aa		3.91	□□□□□ -1.78
SWD2	YKL018W	SWI4	P25302	1093 aa	Known RBP	3.91	□□□□□ -1.78
SWD2	YKL018W	COQ3	P27680	312 aa		3.91	□□□□□ -1.78
SWD2	YKL018W	PRE2	P30656	287 aa	Known RBP	3.91	□□□□□ -1.78
SWD2	YKL018W	SWC3	P31376	625 aa		3.91	□□□□□ -1.78
SWD2	YKL018W	ASK1	P35734	292 aa		3.91	□□□□□ -1.78
SWD2	YKL018W	YMR124W	P39523	943 aa	Known RBP	3.91	□□□□□ -1.78
SWD2	YKL018W	SAP1	P39955	897 aa	Known RBP	3.91	□□□□□ -1.78
SWD2	YKL018W	CAB2	P40506	365 aa		3.91	□□□□□ -1.78
SWD2	YKL018W	ACS1	Q01574	713 aa		3.91	□□□□□ -1.78
SWD2	YKL018W	MDM1	Q01846	1127 aa		3.91	□□□□□ -1.78
SWD2	YKL018W	CRF1	Q04930	467 aa		3.91	□□□□□ -1.78
SWD2	YKL018W	YDR056C	Q12025	205 aa		3.91	□□□□□ -1.78
SWD2	YKL018W	ADE3	P07245	946 aa	Known RBP	3.9	□□□□□ -1.79
SWD2	YKL018W	HSC82	P15108	705 aa	Known RBP	3.9	□□□□□ -1.79
SWD2	YKL018W	AMD2	P22580	549 aa		3.9	□□□□□ -1.79
SWD2	YKL018W	RRP43	P25359	394 aa	Predicted RBP	3.9	□□□□□ -1.79
SWD2	YKL018W	RPS7A	P26786	190 aa	Known RBP	3.9	□□□□□ -1.79
SWD2	YKL018W	SIP1	P32578	815 aa		3.9	□□□□□ -1.79
SWD2	YKL018W	MPE1	P35728	441 aa	Known RBP	3.9	□□□□□ -1.79
SWD2	YKL018W	SCO2	P38072	301 aa		3.9	□□□□□ -1.79
SWD2	YKL018W	YBR138C	P38277	524 aa		3.9	□□□□□ -1.79
SWD2	YKL018W	CFD1	P40558	293 aa		3.9	□□□□□ -1.79
SWD2	YKL018W	IRC8	P47046	822 aa		3.9	□□□□□ -1.79
SWD2	YKL018W	COP1	P53622	1201 aa	Known RBP	3.9	□□□□□ -1.79
SWD2	YKL018W	VPS64	Q03944	604 aa		3.9	□□□□□ -1.79
SWD2	YKL018W	VID22	Q05934	901 aa		3.9	□□□□□ -1.79
SWD2	YKL018W	CSR1	Q06705	408 aa	Known RBP	3.9	□□□□□ -1.79
SWD2	YKL018W	YDL242W	Q07746	117 aa		3.9	□□□□□ -1.79
SWD2	YKL018W	CIR2	Q08822	631 aa		3.9	□□□□□ -1.79
SWD2	YKL018W	RTC1	Q08281	1341 aa		3.9	□□□□□ -1.79
SWD2	YKL018W	CET1	O13297	549 aa	Predicted RBP	3.89	□□□□□ -1.79
SWD2	YKL018W	SNF1	P06782	633 aa	Known RBP	3.89	□□□□□ -1.79
SWD2	YKL018W	GUK1	P15454	187 aa	Known RBP	3.89	□□□□□ -1.79
SWD2	YKL018W	MGM1	P32266	881 aa		3.89	□□□□□ -1.79
SWD2	YKL018W	TEF4	P36008	412 aa	Known RBP	3.89	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 32.2 ms