RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C YIL089WP40500 205 aa2.2□□□□□ -2.06
UFD4YKL010C PSA1P41940 361 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C HSH155P49955 971 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C ZIP2P53061 704 aa2.2□□□□□ -2.06
UFD4YKL010C YGR054WP53235 642 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C CPR6P53691 371 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C CDC123Q05791 360 aa2.2□□□□□ -2.06
UFD4YKL010C YLH47Q06493 454 aa2.2□□□□□ -2.06
UFD4YKL010C NRT1Q08485 598 aa2.2□□□□□ -2.06
UFD4YKL010C RPS31P05759 152 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C CDC24P11433 854 aaPredicted RBP2.2□□□□□ -2.06
UFD4YKL010C DAT1P13483 248 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C POL3P15436 1097 aa2.2□□□□□ -2.06
UFD4YKL010C VMA2P16140 517 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C UGA1P17649 471 aa2.2□□□□□ -2.06
UFD4YKL010C SNT1P25357 1226 aa2.2□□□□□ -2.06
UFD4YKL010C BUD14P27637 709 aa2.2□□□□□ -2.06
UFD4YKL010C SEC1P30619 724 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C HEM12P32347 362 aaPredicted RBP2.2□□□□□ -2.06
UFD4YKL010C SLA2P33338 968 aa2.2□□□□□ -2.06
UFD4YKL010C ATG19P35193 415 aa2.2□□□□□ -2.06
UFD4YKL010C BAP2P38084 609 aa2.2□□□□□ -2.06
UFD4YKL010C SOH1P38633 127 aa2.2□□□□□ -2.06
UFD4YKL010C YAT2P40017 923 aa2.2□□□□□ -2.06
UFD4YKL010C MEP1P40260 492 aa2.2□□□□□ -2.06
UFD4YKL010C ELO3P40319 345 aa2.2□□□□□ -2.06
UFD4YKL010C UTP18P40362 594 aaPredicted RBP2.2□□□□□ -2.06
UFD4YKL010C VHR1P40522 640 aa2.2□□□□□ -2.06
UFD4YKL010C CHS6P40955 746 aa2.2□□□□□ -2.06
UFD4YKL010C YML6P51998 286 aa2.2□□□□□ -2.06
UFD4YKL010C TRM44Q02648 567 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C DOT1Q04089 582 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C ATG34Q12292 412 aa2.2□□□□□ -2.06
UFD4YKL010C HRT3Q12347 344 aa2.2□□□□□ -2.06
UFD4YKL010C CMR1Q12510 522 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C WHI2P12611 486 aa2.2□□□□□ -2.06
UFD4YKL010C YAK1P14680 807 aa2.2□□□□□ -2.06
UFD4YKL010C VBA3P25594 458 aa2.2□□□□□ -2.06
UFD4YKL010C RAD14P28519 371 aa2.2□□□□□ -2.06
UFD4YKL010C PYC2P32327 1180 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C APE2P32454 952 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C SEC6P32844 805 aa2.2□□□□□ -2.06
UFD4YKL010C SMY2P32909 740 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C VBA5P36172 582 aa2.2□□□□□ -2.06
UFD4YKL010C HMT1P38074 348 aa2.2□□□□□ -2.06
UFD4YKL010C PBP2P38151 413 aaKnown RBP RIP-Chip data2.2□□□□□ -2.06not detected
UFD4YKL010C KAP104P38217 918 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C STL1P39932 569 aa2.2□□□□□ -2.06
UFD4YKL010C RRT5P43607 289 aa2.2□□□□□ -2.06
UFD4YKL010C ASN2P49090 572 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C INP52P50942 1183 aa2.2□□□□□ -2.06
UFD4YKL010C DRN1P53255 507 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C PXR1P53335 271 aaPredicted RBP2.2□□□□□ -2.06
UFD4YKL010C NOG2P53742 486 aaKnown RBP2.2□□□□□ -2.06
UFD4YKL010C MRX10Q05648 414 aa2.2□□□□□ -2.06
UFD4YKL010C YET3Q07451 203 aa2.2□□□□□ -2.06
UFD4YKL010C THI72Q08579 599 aa2.2□□□□□ -2.06
UFD4YKL010C OSW2Q12202 724 aa2.2□□□□□ -2.06
UFD4YKL010C YPR053CQ6Q5F3 151 aa2.2□□□□□ -2.06
UFD4YKL010C ENO2P00925 437 aaKnown RBP2.19□□□□□ -2.06
UFD4YKL010C STF2P16965 84 aa2.19□□□□□ -2.06
UFD4YKL010C YSC84P32793 468 aa2.19□□□□□ -2.06
UFD4YKL010C QNS1P38795 714 aaKnown RBP2.19□□□□□ -2.06
UFD4YKL010C PPE1P38796 400 aa2.19□□□□□ -2.06
UFD4YKL010C YJR061WP40355 935 aa2.19□□□□□ -2.06
UFD4YKL010C SNL1P40548 159 aa2.19□□□□□ -2.06
UFD4YKL010C SCD6P45978 349 aaKnown RBP RIP-Chip data2.19□□□□□ -2.06 RIP-Chip
UFD4YKL010C ALT2P52892 507 aa2.19□□□□□ -2.06
UFD4YKL010C SCS3P53012 380 aa2.19□□□□□ -2.06
UFD4YKL010C USE1P53146 245 aa2.19□□□□□ -2.06
UFD4YKL010C SLM2P53955 656 aa2.19□□□□□ -2.06
UFD4YKL010C ARO80Q04052 950 aa2.19□□□□□ -2.06
UFD4YKL010C TAF11Q04226 346 aa2.19□□□□□ -2.06
UFD4YKL010C BUD22Q04347 519 aaKnown RBP2.19□□□□□ -2.06
UFD4YKL010C HOS1Q12214 470 aa2.19□□□□□ -2.06
UFD4YKL010C PRP4P20053 465 aaKnown RBP2.19□□□□□ -2.06
UFD4YKL010C MSB1P21339 1137 aaKnown RBP2.19□□□□□ -2.06
UFD4YKL010C SLY1P22213 666 aa2.19□□□□□ -2.06
UFD4YKL010C VAN1P23642 535 aa2.19□□□□□ -2.06
UFD4YKL010C SSD1P24276 1250 aaKnown RBP RIP-Chip data2.19□□□□□ -2.06not detected
UFD4YKL010C DBR1P24309 405 aaKnown RBP2.19□□□□□ -2.06
UFD4YKL010C SKG6P32900 734 aaPredicted RBP2.19□□□□□ -2.06
UFD4YKL010C SRB2P34162 210 aa2.19□□□□□ -2.06
UFD4YKL010C UBX7P38349 436 aa2.19□□□□□ -2.06
UFD4YKL010C DIA4P38705 446 aaPredicted RBP2.19□□□□□ -2.06
UFD4YKL010C GGA2P38817 585 aaKnown RBP2.19□□□□□ -2.06
UFD4YKL010C EAF5P39995 279 aa2.19□□□□□ -2.06
UFD4YKL010C YJR054WP47114 497 aa2.19□□□□□ -2.06
UFD4YKL010C YDR179W-AQ03983 463 aa2.19□□□□□ -2.06
UFD4YKL010C ORM2Q06144 216 aa2.19□□□□□ -2.06
UFD4YKL010C YDL114WQ07530 308 aa2.19□□□□□ -2.06
UFD4YKL010C YKL018C-AQ3E7A7 99 aa2.19□□□□□ -2.06
UFD4YKL010C STE2D6VTK4 431 aa2.19□□□□□ -2.06
UFD4YKL010C AI3P03877 415 aa2.19□□□□□ -2.06
UFD4YKL010C MSS51P32335 436 aa2.19□□□□□ -2.06
UFD4YKL010C SKG1P36169 355 aa2.19□□□□□ -2.06
UFD4YKL010C AMN1P38285 549 aaPredicted RBP2.19□□□□□ -2.06
UFD4YKL010C ATG12P38316 186 aa2.19□□□□□ -2.06
UFD4YKL010C YHI9P38765 294 aa2.19□□□□□ -2.06
UFD4YKL010C YHR131CP38835 850 aa2.19□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 9.3 ms