RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W ARO9P38840 513 aaPredicted RBP1.23□□□□□ -2.21
PRP42YDR235W SIM1P40472 476 aa1.23□□□□□ -2.21
PRP42YDR235W SPG5P42933 373 aa1.23□□□□□ -2.21
PRP42YDR235W COS12P53053 380 aa1.23□□□□□ -2.21
PRP42YDR235W ESBP6P53918 673 aa1.23□□□□□ -2.21
PRP42YDR235W MTQ2Q03920 221 aaPredicted RBP1.23□□□□□ -2.21
PRP42YDR235W ARP9Q05123 467 aa1.23□□□□□ -2.21
PRP42YDR235W ECI1Q05871 280 aa1.23□□□□□ -2.21
PRP42YDR235W YDL242WQ07746 117 aa1.23□□□□□ -2.21
PRP42YDR235W NGL1Q08213 363 aaKnown RBP1.23□□□□□ -2.21
PRP42YDR235W ATP12P22135 325 aa1.22□□□□□ -2.21
PRP42YDR235W CWH43P25618 953 aa1.22□□□□□ -2.21
PRP42YDR235W DID4P36108 232 aa1.22□□□□□ -2.21
PRP42YDR235W TYS1P36421 394 aaKnown RBP1.22□□□□□ -2.21
PRP42YDR235W STB5P38699 743 aa1.22□□□□□ -2.21
PRP42YDR235W MTC6P38849 526 aa1.22□□□□□ -2.21
PRP42YDR235W YJR061WP40355 935 aa1.22□□□□□ -2.21
PRP42YDR235W MNN11P46985 422 aaKnown RBP1.22□□□□□ -2.21
PRP42YDR235W MDR1P53258 950 aa1.22□□□□□ -2.21
PRP42YDR235W YAT1P80235 687 aa1.22□□□□□ -2.21
PRP42YDR235W NOP56Q12460 504 aaKnown RBP RIP-Chip data1.22□□□□□ -2.21not detected
PRP42YDR235W VPS5Q92331 675 aa1.22□□□□□ -2.21
PRP42YDR235W ARG1P22768 420 aa1.22□□□□□ -2.21
PRP42YDR235W MSS51P32335 436 aa1.22□□□□□ -2.21
PRP42YDR235W RAD24P32641 659 aa1.22□□□□□ -2.21
PRP42YDR235W SER1P33330 395 aaKnown RBP1.22□□□□□ -2.21
PRP42YDR235W VPS41P38959 992 aa1.22□□□□□ -2.21
PRP42YDR235W CDC1P40986 491 aa1.22□□□□□ -2.21
PRP42YDR235W IRC5P43610 853 aa1.22□□□□□ -2.21
PRP42YDR235W RNR4P49723 345 aaKnown RBP1.22□□□□□ -2.21
PRP42YDR235W RNH70P53331 553 aa1.22□□□□□ -2.21
PRP42YDR235W POS5Q06892 414 aa1.22□□□□□ -2.21
PRP42YDR235W YTM1Q12024 460 aaPredicted RBP1.22□□□□□ -2.21
PRP42YDR235W PPT2Q12036 173 aa1.22□□□□□ -2.21
PRP42YDR235W DAP1Q12091 152 aa1.22□□□□□ -2.21
PRP42YDR235W NOP14Q99207 810 aaKnown RBP1.22□□□□□ -2.21
PRP42YDR235W URA3P03962 267 aa1.21□□□□□ -2.22
PRP42YDR235W ILV2P07342 687 aaKnown RBP1.21□□□□□ -2.22
PRP42YDR235W KGD2P19262 463 aaPredicted RBP1.21□□□□□ -2.22
PRP42YDR235W VBA2P38358 474 aaKnown RBP1.21□□□□□ -2.22
PRP42YDR235W LNP1P38878 278 aa1.21□□□□□ -2.22
PRP42YDR235W TPA1P40032 644 aaKnown RBP1.21□□□□□ -2.22
PRP42YDR235W OSW7P43611 510 aa1.21□□□□□ -2.22
PRP42YDR235W ATG27P46989 271 aa1.21□□□□□ -2.22
PRP42YDR235W MNT2P53059 558 aa1.21□□□□□ -2.22
PRP42YDR235W YGL036WP53185 909 aaPredicted RBP1.21□□□□□ -2.22
PRP42YDR235W EAF7P53911 425 aaKnown RBP1.21□□□□□ -2.22
PRP42YDR235W THI73Q07904 523 aa1.21□□□□□ -2.22
PRP42YDR235W YPL191CQ08930 360 aa1.21□□□□□ -2.22
PRP42YDR235W YCR061WP25639 631 aa1.2□□□□□ -2.22
PRP42YDR235W SRP68P38687 599 aaKnown RBP1.2□□□□□ -2.22
PRP42YDR235W ERC1P38767 581 aa1.2□□□□□ -2.22
PRP42YDR235W YPI1P43587 155 aa1.2□□□□□ -2.22
PRP42YDR235W IDS2P46958 469 aa1.2□□□□□ -2.22
PRP42YDR235W BOR1P53838 576 aa1.2□□□□□ -2.22
PRP42YDR235W CAC2Q04199 468 aa1.2□□□□□ -2.22
PRP42YDR235W PDR8Q06149 701 aa1.2□□□□□ -2.22
PRP42YDR235W THI3Q07471 609 aa1.2□□□□□ -2.22
PRP42YDR235W YOR378WQ08902 515 aa1.2□□□□□ -2.22
PRP42YDR235W ADR1P07248 1323 aa1.19□□□□□ -2.22
PRP42YDR235W PTC6P25646 442 aa1.19□□□□□ -2.22
PRP42YDR235W OCT1P35999 772 aa1.19□□□□□ -2.22
PRP42YDR235W PEA2P40091 420 aa1.19□□□□□ -2.22
PRP42YDR235W HLJ1P48353 224 aa1.19□□□□□ -2.22
PRP42YDR235W YPR003CP53394 754 aa1.19□□□□□ -2.22
PRP42YDR235W MCH4Q08268 501 aa1.19□□□□□ -2.22
PRP42YDR235W LEA1Q08963 238 aaPredicted RBP1.19□□□□□ -2.22
PRP42YDR235W BAR1P12630 587 aa1.18□□□□□ -2.22
PRP42YDR235W MSH1P25846 959 aa1.18□□□□□ -2.22
PRP42YDR235W PRP45P28004 379 aaPredicted RBP1.18□□□□□ -2.22
PRP42YDR235W PRE2P30656 287 aaKnown RBP1.18□□□□□ -2.22
PRP42YDR235W DAL3P32459 195 aa1.18□□□□□ -2.22
PRP42YDR235W RPN2P32565 945 aaKnown RBP1.18□□□□□ -2.22
PRP42YDR235W TRS65P32893 560 aa1.18□□□□□ -2.22
PRP42YDR235W RIM2P38127 377 aa1.18□□□□□ -2.22
PRP42YDR235W RBG2P53295 368 aaKnown RBP1.18□□□□□ -2.22
PRP42YDR235W PIG1Q06216 648 aa1.18□□□□□ -2.22
PRP42YDR235W YPR027CQ12079 277 aa1.18□□□□□ -2.22
PRP42YDR235W RTK1Q12100 620 aaPredicted RBP1.18□□□□□ -2.22
PRP42YDR235W YLL056CQ12177 298 aa1.18□□□□□ -2.22
PRP42YDR235W HOS1Q12214 470 aa1.18□□□□□ -2.22
PRP42YDR235W HXT1P32465 570 aa1.18□□□□□ -2.22
PRP42YDR235W PET309P32522 965 aaPredicted RBP1.18□□□□□ -2.22
PRP42YDR235W RPF2P36160 344 aaKnown RBP1.18□□□□□ -2.22
PRP42YDR235W EAF5P39995 279 aa1.18□□□□□ -2.22
PRP42YDR235W GPP1P41277 250 aaKnown RBP1.18□□□□□ -2.22
PRP42YDR235W GSM1P42950 618 aa1.18□□□□□ -2.22
PRP42YDR235W IML2P47031 731 aa1.18□□□□□ -2.22
PRP42YDR235W UBP8P50102 471 aa1.18□□□□□ -2.22
PRP42YDR235W GPG1P53130 126 aa1.18□□□□□ -2.22
PRP42YDR235W YNR071CP53757 342 aa1.18□□□□□ -2.22
PRP42YDR235W DNM1P54861 757 aa1.18□□□□□ -2.22
PRP42YDR235W UME1Q03010 460 aa1.18□□□□□ -2.22
PRP42YDR235W CRF1Q04930 467 aa1.18□□□□□ -2.22
PRP42YDR235W FAP7Q12055 197 aaPredicted RBP1.18□□□□□ -2.22
PRP42YDR235W DIN7Q12086 430 aa1.18□□□□□ -2.22
PRP42YDR235W MGR1P25573 417 aa1.17□□□□□ -2.22
PRP42YDR235W SIP1P32578 815 aa1.17□□□□□ -2.22
PRP42YDR235W RRP14P36080 434 aaKnown RBP1.17□□□□□ -2.22
PRP42YDR235W PTH1P38876 190 aaKnown RBP1.17□□□□□ -2.22
Retrieved 100 of 5,963 RNA–protein pairs in 20.4 ms