RNA–Protein interactions for RNA: YDL108W

KIN28, Transcript of Serine/threonine protein kinase, subunit of transcription factor TFIIH, yeast

Gene KIN28, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
KIN28	YDL108W	RTC5	Q12108	567 aa	Known RBP	4.89	□□□□□ -1.63
KIN28	YDL108W	CDC26	P14724	124 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	IME1	P21190	360 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	DEP1	P31385	405 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	DPH5	P32469	300 aa	Predicted RBP	4.88	□□□□□ -1.63
KIN28	YDL108W	PAH1	P32567	862 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	YKT6	P36015	200 aa	Known RBP	4.88	□□□□□ -1.63
KIN28	YDL108W	MIC60	P36112	540 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	EFM2	P38347	419 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	MTG2	P38860	518 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	RTS1	P38903	757 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	FMP52	P40008	231 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	TPA1	P40032	644 aa	Known RBP	4.88	□□□□□ -1.63
KIN28	YDL108W	KAP123	P40069	1113 aa	Known RBP	4.88	□□□□□ -1.63
KIN28	YDL108W	YIL161W	P40449	235 aa	Known RBP	4.88	□□□□□ -1.63
KIN28	YDL108W	MKT1	P40850	830 aa	Known RBP	4.88	□□□□□ -1.63
KIN28	YDL108W	AIP1	P46680	615 aa	Known RBP	4.88	□□□□□ -1.63
KIN28	YDL108W	YAP1802	P53309	568 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	SUN4	P53616	420 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	DSL1	P53847	754 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	VPS9	P54787	451 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	TIM10	P87108	93 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	FDC1	Q03034	503 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	RRN11	Q04712	507 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	THI22	Q06490	572 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	STP4	Q07351	490 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	YOR389W	Q08912	624 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	FRE6	Q12473	712 aa		4.88	□□□□□ -1.63
KIN28	YDL108W	POL3	P15436	1097 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	DGR2	P32330	852 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	HEM12	P32347	362 aa	Predicted RBP	4.87	□□□□□ -1.63
KIN28	YDL108W	HXT4	P32467	576 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	NIP1	P32497	812 aa	Known RBP	4.87	□□□□□ -1.63
KIN28	YDL108W	SLC1	P33333	303 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	YLF2	P38746	405 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	SFB3	P38810	929 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	PIG2	P40187	538 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	YJL068C	P40363	299 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	BUD8	P41698	603 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	IRC6	P43615	237 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	UPF3	P48412	387 aa	Known RBP	4.87	□□□□□ -1.63
KIN28	YDL108W	TAF4	P50105	388 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	PAN2	P53010	1115 aa	Predicted RBP	4.87	□□□□□ -1.63
KIN28	YDL108W	ERV25	P54837	211 aa	Known RBP	4.87	□□□□□ -1.63
KIN28	YDL108W	CIK1	Q01649	594 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	HOT1	Q03213	719 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	FCP1	Q03254	732 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	ECM38	Q05902	660 aa	Predicted RBP	4.87	□□□□□ -1.63
KIN28	YDL108W	LSP1	Q12230	341 aa	Known RBP	4.87	□□□□□ -1.63
KIN28	YDL108W	MDY2	Q12285	212 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	YKL033W-A	Q86ZR7	236 aa		4.87	□□□□□ -1.63
KIN28	YDL108W	MSS18	P08593	268 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	MET8	P15807	274 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	THR4	P16120	514 aa	Known RBP	4.86	□□□□□ -1.63
KIN28	YDL108W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	not detected
KIN28	YDL108W	ATP12	P22135	325 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	VPS3	P23643	1011 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	MSH1	P25846	959 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	YUH1	P35127	236 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	LAS1	P36146	502 aa	Predicted RBP	4.86	□□□□□ -1.63
KIN28	YDL108W	PPS1	P38148	807 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	RFC1	P38630	861 aa	Known RBP	4.86	□□□□□ -1.63
KIN28	YDL108W	YHR033W	P38690	423 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	YHB1	P39676	399 aa	Known RBP	4.86	□□□□□ -1.63
KIN28	YDL108W	FTR1	P40088	404 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	LCB2	P40970	561 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	SKP2	P42843	763 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	BPL1	P48445	690 aa	Predicted RBP	4.86	□□□□□ -1.63
KIN28	YDL108W	SHE4	P51534	789 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	YNR061C	P53747	219 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	RTC4	P53850	401 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	YMR206W	Q03695	313 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	GYL1	Q04322	720 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	UTP21	Q06078	939 aa	Predicted RBP	4.86	□□□□□ -1.63
KIN28	YDL108W	NOP6	Q07623	225 aa	Known RBP	4.86	□□□□□ -1.63
KIN28	YDL108W	NGL1	Q08213	363 aa	Known RBP	4.86	□□□□□ -1.63
KIN28	YDL108W	PUS9	Q12069	462 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	SFI1	Q12369	946 aa		4.86	□□□□□ -1.63
KIN28	YDL108W	IKI3	Q06706	1349 aa	Known RBP	4.86	□□□□□ -1.63
KIN28	YDL108W	ILS1	P09436	1072 aa	Known RBP	4.85	□□□□□ -1.63
KIN28	YDL108W	CDC16	P09798	840 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	THR1	P17423	357 aa	Known RBP	4.85	□□□□□ -1.63
KIN28	YDL108W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.85	□□□□□ -1.63	not detected
KIN28	YDL108W	DMC1	P25453	334 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	BUD14	P27637	709 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	ITR1	P30605	584 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	MGM1	P32266	881 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	MF(ALPHA)2	P32435	120 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	SET3	P36124	751 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	UIP5	P36137	443 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	PPE1	P38796	400 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	SWD1	P39706	426 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	BUD16	P39988	312 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	YIL077C	P40508	320 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	QRI7	P43122	407 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	TEL2	P53038	688 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	CGR1	P53188	120 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	MDR1	P53258	950 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	YGR266W	P53326	701 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	DAK1	P54838	584 aa	Known RBP	4.85	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 36.9 ms