RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 SGMS1Q86VZ5 419 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 DGKHQ86XP1 1220 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 SULF1Q8IWU6 871 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 ZSCAN29Q8IWY8 852 aaPredicted RBP11.31□□□□□ -0.6
LIMA1-211ENST00000552338 TMTC2Q8N394 836 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 NKX2-3Q8TAU0 364 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 IGDCC4Q8TDY8 1250 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 DYNLL2Q96FJ2 89 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 JAKMIP1Q96N16 626 aaKnown RBP11.31□□□□□ -0.6
LIMA1-211ENST00000552338 SYNPO2Q9UMS6 1093 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 CYP46A1Q9Y6A2 500 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 SSC5DA1L4H1 1573 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 DOCK1Q14185 1865 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 MYH4Q9Y623 1939 aa11.31□□□□□ -0.6
LIMA1-211ENST00000552338 PHIPQ8WWQ0 1821 aa11.3□□□□□ -0.6
LIMA1-211ENST00000552338 B4E1Z4 1266 aa11.3□□□□□ -0.6
LIMA1-211ENST00000552338 KDM4AO75164 1064 aa11.3□□□□□ -0.6
LIMA1-211ENST00000552338 RCAN1P53805 252 aa11.3□□□□□ -0.6
LIMA1-211ENST00000552338 ANKRD1Q15327 319 aa11.3□□□□□ -0.6
LIMA1-211ENST00000552338 PPP4R3BQ5MIZ7 849 aa11.3□□□□□ -0.6
LIMA1-211ENST00000552338 NBPF12Q5TAG4 269 aaPredicted RBP11.3□□□□□ -0.6
LIMA1-211ENST00000552338 CYB5R4Q7L1T6 521 aa11.3□□□□□ -0.6
LIMA1-211ENST00000552338 KRT26Q7Z3Y9 468 aa11.3□□□□□ -0.6
LIMA1-211ENST00000552338 RALYLQ86SE5 291 aaKnown RBP11.3□□□□□ -0.6
LIMA1-211ENST00000552338 ZNF444Q8N0Y2 327 aaPredicted RBP11.3□□□□□ -0.6
LIMA1-211ENST00000552338 MKL1Q969V6 931 aa11.3□□□□□ -0.6
LIMA1-211ENST00000552338 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.3□□□□□ -0.6
LIMA1-211ENST00000552338 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.3□□□□□ -0.6
LIMA1-211ENST00000552338 MKNK2Q9HBH9 465 aa11.3□□□□□ -0.6
LIMA1-211ENST00000552338 NMRK2Q9NPI5 230 aa11.3□□□□□ -0.6
LIMA1-211ENST00000552338 INCENPQ9NQS7 918 aa11.3□□□□□ -0.6
LIMA1-211ENST00000552338 KIF3CO14782 793 aa11.29□□□□□ -0.6
LIMA1-211ENST00000552338 CTNND1O60716 968 aaKnown RBP11.29□□□□□ -0.6
LIMA1-211ENST00000552338 ITGBL1O95965 494 aaPredicted RBP11.29□□□□□ -0.6
LIMA1-211ENST00000552338 CAP2P40123 477 aa11.29□□□□□ -0.6
LIMA1-211ENST00000552338 NEK4P51957 841 aa11.29□□□□□ -0.6
LIMA1-211ENST00000552338 TFAP4Q01664 338 aa11.29□□□□□ -0.6
LIMA1-211ENST00000552338 TOB2Q14106 344 aaPredicted RBP11.29□□□□□ -0.6
LIMA1-211ENST00000552338 CERKLQ49MI3 558 aaPredicted RBP11.29□□□□□ -0.6
LIMA1-211ENST00000552338 NOL9Q5SY16 702 aaKnown RBP11.29□□□□□ -0.6
LIMA1-211ENST00000552338 IQCA1Q86XH1 822 aa11.29□□□□□ -0.6
LIMA1-211ENST00000552338 CDAN1Q8IWY9 1227 aa11.29□□□□□ -0.6
LIMA1-211ENST00000552338 SLC44A5Q8NCS7 719 aa11.29□□□□□ -0.6
LIMA1-211ENST00000552338 KLRG1Q96E93 195 aa11.29□□□□□ -0.6
LIMA1-211ENST00000552338 ZNF341Q9BYN7 854 aa11.29□□□□□ -0.6
LIMA1-211ENST00000552338 IL17RBQ9NRM6 502 aa11.29□□□□□ -0.6
LIMA1-211ENST00000552338 RBM19Q9Y4C8 960 aaKnown RBP11.29□□□□□ -0.6
LIMA1-211ENST00000552338 NID2Q14112 1375 aa11.28□□□□□ -0.6
LIMA1-211ENST00000552338 OTOFQ9HC10 1997 aa11.28□□□□□ -0.6
LIMA1-211ENST00000552338 SH2B2O14492 632 aaPredicted RBP11.28□□□□□ -0.6
LIMA1-211ENST00000552338 PRC1O43663 620 aa11.28□□□□□ -0.6
LIMA1-211ENST00000552338 ST18O60284 1047 aa11.28□□□□□ -0.6
LIMA1-211ENST00000552338 USP2O75604 605 aaPredicted RBP11.28□□□□□ -0.6
LIMA1-211ENST00000552338 POTEIP0CG38 1075 aa11.28□□□□□ -0.6
LIMA1-211ENST00000552338 POTEJP0CG39 1038 aa11.28□□□□□ -0.6
LIMA1-211ENST00000552338 GUCY1A2P33402 732 aa11.28□□□□□ -0.6
LIMA1-211ENST00000552338 FKBP1BP68106 108 aa11.28□□□□□ -0.6
LIMA1-211ENST00000552338 RRP1BQ14684 758 aaKnown RBP11.28□□□□□ -0.6
LIMA1-211ENST00000552338 RCSD1Q6JBY9 416 aa11.28□□□□□ -0.6
LIMA1-211ENST00000552338 TMEM179Q6ZVK1 233 aa11.28□□□□□ -0.6
LIMA1-211ENST00000552338 CRACR2BQ8N4Y2 399 aaPredicted RBP11.28□□□□□ -0.6
LIMA1-211ENST00000552338 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.28□□□□□ -0.6
LIMA1-211ENST00000552338 ZNF274Q96GC6 653 aaPredicted RBP11.28□□□□□ -0.6
LIMA1-211ENST00000552338 ZSCAN10Q96SZ4 725 aaPredicted RBP11.28□□□□□ -0.6
LIMA1-211ENST00000552338 MAP3K14Q99558 947 aa11.28□□□□□ -0.6
LIMA1-211ENST00000552338 TBC1D2Q9BYX2 928 aa11.28□□□□□ -0.6
LIMA1-211ENST00000552338 PDRG1Q9NUG6 133 aa11.28□□□□□ -0.6
LIMA1-211ENST00000552338 NYAP2Q9P242 653 aa11.28□□□□□ -0.6
LIMA1-211ENST00000552338 ANGEL1Q9UNK9 670 aaKnown RBP11.28□□□□□ -0.6
LIMA1-211ENST00000552338 TSPY2A6NKD2 308 aa11.27□□□□□ -0.61
LIMA1-211ENST00000552338 RANBP6O60518 1105 aaKnown RBP11.27□□□□□ -0.61
LIMA1-211ENST00000552338 PRDM1O75626 825 aa11.27□□□□□ -0.61
LIMA1-211ENST00000552338 ASNSP08243 561 aa11.27□□□□□ -0.61
LIMA1-211ENST00000552338 TSPY3P0CV98 308 aa11.27□□□□□ -0.61
LIMA1-211ENST00000552338 TSPY8P0CW00 308 aa11.27□□□□□ -0.61
LIMA1-211ENST00000552338 AKR1B1P15121 316 aa11.27□□□□□ -0.61
LIMA1-211ENST00000552338 SART3Q15020 963 aaKnown RBP11.27□□□□□ -0.61
LIMA1-211ENST00000552338 PPP2R5BQ15173 497 aa11.27□□□□□ -0.61
LIMA1-211ENST00000552338 EAPPQ56P03 285 aaPredicted RBP11.27□□□□□ -0.61
LIMA1-211ENST00000552338 CHADLQ6NUI6 762 aa11.27□□□□□ -0.61
LIMA1-211ENST00000552338 USP48Q86UV5 1035 aa11.27□□□□□ -0.61
LIMA1-211ENST00000552338 ENAHQ8N8S7 591 aaPredicted RBP11.27□□□□□ -0.61
LIMA1-211ENST00000552338 CDCA5Q96FF9 252 aa11.27□□□□□ -0.61
LIMA1-211ENST00000552338 UPF3BQ9BZI7 483 aaKnown RBP11.27□□□□□ -0.61
LIMA1-211ENST00000552338 KANSL2Q9H9L4 492 aa11.27□□□□□ -0.61
LIMA1-211ENST00000552338 LY9Q9HBG7 655 aa11.27□□□□□ -0.61
LIMA1-211ENST00000552338 MTMR4Q9NYA4 1195 aa11.27□□□□□ -0.61
LIMA1-211ENST00000552338 PTPRFP10586 1907 aa11.27□□□□□ -0.61
LIMA1-211ENST00000552338 ADM5C9JUS6 153 aa11.26□□□□□ -0.61
LIMA1-211ENST00000552338 PPP1R12BO60237 982 aaPredicted RBP11.26□□□□□ -0.61
LIMA1-211ENST00000552338 CPA1P15085 419 aa11.26□□□□□ -0.61
LIMA1-211ENST00000552338 NF2P35240 595 aa11.26□□□□□ -0.61
LIMA1-211ENST00000552338 AK2P54819 239 aa11.26□□□□□ -0.61
LIMA1-211ENST00000552338 ABCB5Q2M3G0 1257 aa11.26□□□□□ -0.61
LIMA1-211ENST00000552338 FAM47AQ5JRC9 791 aa11.26□□□□□ -0.61
LIMA1-211ENST00000552338 LDLRAD1Q5T700 205 aa11.26□□□□□ -0.61
LIMA1-211ENST00000552338 Q6ZUG5 572 aa11.26□□□□□ -0.61
LIMA1-211ENST00000552338 SIAH1Q8IUQ4 282 aa11.26□□□□□ -0.61
LIMA1-211ENST00000552338 ZSCAN31Q96LW9 406 aaPredicted RBP11.26□□□□□ -0.61
LIMA1-211ENST00000552338 TRIM34Q9BYJ4 488 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms