RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 TOMM22Q9NS69 142 aa12.48□□□□□ -0.41
CLIP1-210ENST00000538120 AATFQ9NY61 560 aaKnown RBP eCLIP12.48□□□□□ -0.41
CLIP1-210ENST00000538120 SLC12A7Q9Y666 1083 aa12.48□□□□□ -0.41
CLIP1-210ENST00000538120 KIF28PB7ZC32 967 aa12.47□□□□□ -0.41
CLIP1-210ENST00000538120 SEC23AQ15436 765 aa12.47□□□□□ -0.41
CLIP1-210ENST00000538120 ATL3Q6DD88 541 aa12.47□□□□□ -0.41
CLIP1-210ENST00000538120 CHD4Q14839 1912 aa12.47□□□□□ -0.41
CLIP1-210ENST00000538120 CCDC69A6NI79 296 aa12.47□□□□□ -0.41
CLIP1-210ENST00000538120 WTAPQ15007 396 aa12.47□□□□□ -0.41
CLIP1-210ENST00000538120 DCP1AQ9NPI6 582 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-210ENST00000538120 USP17L12C9JPN9 530 aa12.46□□□□□ -0.41
CLIP1-210ENST00000538120 USP17L21D6R901 530 aa12.46□□□□□ -0.41
CLIP1-210ENST00000538120 UBE2Q2LH0YL09 131 aa12.46□□□□□ -0.41
CLIP1-210ENST00000538120 PLSCR1O15162 318 aa12.46□□□□□ -0.41
CLIP1-210ENST00000538120 CDKL5O76039 1030 aa12.46□□□□□ -0.41
CLIP1-210ENST00000538120 KIF23Q02241 960 aaPredicted RBP12.46□□□□□ -0.41
CLIP1-210ENST00000538120 ZNF396Q96N95 335 aaPredicted RBP12.46□□□□□ -0.41
CLIP1-210ENST00000538120 ALG1Q9BT22 464 aa12.46□□□□□ -0.41
CLIP1-210ENST00000538120 DACT1Q9NYF0 836 aa12.46□□□□□ -0.41
CLIP1-210ENST00000538120 BBOX1O75936 387 aa12.46□□□□□ -0.42
CLIP1-210ENST00000538120 ATP2B4P23634 1241 aa12.46□□□□□ -0.42
CLIP1-210ENST00000538120 SPTY2D1Q68D10 685 aaPredicted RBP12.46□□□□□ -0.42
CLIP1-210ENST00000538120 COL23A1Q86Y22 540 aaPredicted RBP12.46□□□□□ -0.42
CLIP1-210ENST00000538120 SPC24Q8NBT2 197 aa12.46□□□□□ -0.42
CLIP1-210ENST00000538120 WDR66Q8TBY9 1149 aa12.46□□□□□ -0.42
CLIP1-210ENST00000538120 ESR2Q92731 530 aa12.46□□□□□ -0.42
CLIP1-210ENST00000538120 CRAMP1Q96RY5 1269 aa12.46□□□□□ -0.42
CLIP1-210ENST00000538120 KCNF1Q9H3M0 494 aa12.46□□□□□ -0.42
CLIP1-210ENST00000538120 PYCARDQ9ULZ3 195 aa12.46□□□□□ -0.42
CLIP1-210ENST00000538120 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.46□□□□□ -0.42
CLIP1-210ENST00000538120 MYH15Q9Y2K3 1946 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 DUOX1Q9NRD9 1551 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 GOLGA6L4A6NEF3 574 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 NR1I2O75469 434 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 UFL1O94874 794 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 CYP2D6P10635 497 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 ZNF772Q68DY9 489 aaPredicted RBP12.45□□□□□ -0.42
CLIP1-210ENST00000538120 ZNF804AQ7Z570 1209 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 CRNKL1Q9BZJ0 848 aaKnown RBP12.45□□□□□ -0.42
CLIP1-210ENST00000538120 RTEL1Q9NZ71 1219 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 MYH13Q9UKX3 1938 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 MAST2Q6P0Q8 1798 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 POLR3DP05423 398 aaPredicted RBP12.45□□□□□ -0.42
CLIP1-210ENST00000538120 IFNAR1P17181 557 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 IARSP41252 1262 aaKnown RBP12.45□□□□□ -0.42
CLIP1-210ENST00000538120 SART3Q15020 963 aaKnown RBP12.45□□□□□ -0.42
CLIP1-210ENST00000538120 CPLX2Q6PUV4 134 aaKnown RBP12.45□□□□□ -0.42
CLIP1-210ENST00000538120 MTERF4Q7Z6M4 381 aaKnown RBP12.45□□□□□ -0.42
CLIP1-210ENST00000538120 NBPF11Q86T75 865 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 TMTC2Q8N394 836 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 NUP62CLQ9H1M0 184 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 CD209Q9NNX6 404 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 ATP8A2Q9NTI2 1148 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 POLLQ9UGP5 575 aa12.45□□□□□ -0.42
CLIP1-210ENST00000538120 MKRN1Q9UHC7 482 aaKnown RBP12.45□□□□□ -0.42
CLIP1-210ENST00000538120 TNKSO95271 1327 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 STK36Q9NRP7 1315 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 PRDM1O75626 825 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 FMNL1O95466 1100 aaPredicted RBP12.44□□□□□ -0.42
CLIP1-210ENST00000538120 APBA3O96018 575 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 LDHBP07195 334 aaKnown RBP12.44□□□□□ -0.42
CLIP1-210ENST00000538120 IL1R1P14778 569 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 CAMK4Q16566 473 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 SBK1Q52WX2 424 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 MYSM1Q5VVJ2 828 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 KRT40Q6A162 431 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 DZIP1Q86YF9 867 aaKnown RBP12.44□□□□□ -0.42
CLIP1-210ENST00000538120 ENAHQ8N8S7 591 aaPredicted RBP12.44□□□□□ -0.42
CLIP1-210ENST00000538120 TBC1D16Q8TBP0 767 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 GOLPH3LQ9H4A5 285 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 CLSTN2Q9H4D0 955 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 SPTLC3Q9NUV7 552 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 GGA1Q9UJY5 639 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 CLIC4Q9Y696 253 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 ERICH2A1L162 156 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 GUCY1A2P33402 732 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 RCAN1P53805 252 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 RTN1Q16799 776 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 SYNE3Q6ZMZ3 975 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 RBM43Q6ZSC3 357 aaKnown RBP12.44□□□□□ -0.42
CLIP1-210ENST00000538120 BRAPQ7Z569 592 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 ZNF654Q8IZM8 581 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 BICD2Q8TD16 824 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 PRIMPOLQ96LW4 560 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 ZSCAN10Q96SZ4 725 aaPredicted RBP12.44□□□□□ -0.42
CLIP1-210ENST00000538120 UBAC1Q9BSL1 405 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 SLC26A6Q9BXS9 759 aa12.44□□□□□ -0.42
CLIP1-210ENST00000538120 DDX19AQ9NUU7 478 aaKnown RBP12.44□□□□□ -0.42
CLIP1-210ENST00000538120 BAZ2AQ9UIF9 1905 aaKnown RBP12.43□□□□□ -0.42
CLIP1-210ENST00000538120 ORC4O43929 436 aa12.43□□□□□ -0.42
CLIP1-210ENST00000538120 PCP11498 1178 aaKnown RBP12.43□□□□□ -0.42
CLIP1-210ENST00000538120 SSRP1Q08945 709 aaKnown RBP12.43□□□□□ -0.42
CLIP1-210ENST00000538120 DIXDC1Q155Q3 683 aa12.43□□□□□ -0.42
CLIP1-210ENST00000538120 FANCBQ8NB91 859 aa12.43□□□□□ -0.42
CLIP1-210ENST00000538120 LINC00301Q8NCQ3 95 aa12.43□□□□□ -0.42
CLIP1-210ENST00000538120 CCDC94Q9BW85 323 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-210ENST00000538120 PRDM16Q9HAZ2 1276 aa12.43□□□□□ -0.42
CLIP1-210ENST00000538120 POTEB2H3BUK9 544 aa12.43□□□□□ -0.42
CLIP1-210ENST00000538120 MAP3K11Q16584 847 aa12.43□□□□□ -0.42
CLIP1-210ENST00000538120 CCAR1Q8IX12 1150 aaKnown RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms