RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 VGLL4Q14135 290 aa10.16□□□□□ -0.78
VPS4B-201ENST00000238497 CAMK4Q16566 473 aa10.16□□□□□ -0.78
VPS4B-201ENST00000238497 KLHL40Q2TBA0 621 aa10.16□□□□□ -0.78
VPS4B-201ENST00000238497 Q6ZUG5 572 aa10.16□□□□□ -0.78
VPS4B-201ENST00000238497 ZFPM1Q8IX07 1006 aa10.16□□□□□ -0.78
VPS4B-201ENST00000238497 TEX11Q8IYF3 940 aa10.16□□□□□ -0.78
VPS4B-201ENST00000238497 NEK1Q96PY6 1258 aa10.16□□□□□ -0.78
VPS4B-201ENST00000238497 NCOA5Q9HCD5 579 aaKnown RBP10.16□□□□□ -0.78
VPS4B-201ENST00000238497 INPP5BP32019 993 aa10.16□□□□□ -0.78
VPS4B-201ENST00000238497 RRP12Q5JTH9 1297 aaKnown RBP10.16□□□□□ -0.78
VPS4B-201ENST00000238497 FAM151AQ8WW52 585 aa10.16□□□□□ -0.78
VPS4B-201ENST00000238497 TEPSINQ96N21 525 aa10.16□□□□□ -0.78
VPS4B-201ENST00000238497 TMEM63CQ9P1W3 806 aa10.16□□□□□ -0.78
VPS4B-201ENST00000238497 PSME4Q14997 1843 aa10.16□□□□□ -0.78
VPS4B-201ENST00000238497 FAM196BA6NMK8 535 aa10.15□□□□□ -0.78
VPS4B-201ENST00000238497 SLURP2P0DP57 97 aa10.15□□□□□ -0.78
VPS4B-201ENST00000238497 ATP5JP18859 108 aa10.15□□□□□ -0.78
VPS4B-201ENST00000238497 OTUD7BQ6GQQ9 843 aa10.15□□□□□ -0.78
VPS4B-201ENST00000238497 FAM83AQ86UY5 434 aa10.15□□□□□ -0.78
VPS4B-201ENST00000238497 MIGA1Q8NAN2 632 aa10.15□□□□□ -0.78
VPS4B-201ENST00000238497 MRIQ9BWK5 157 aa10.15□□□□□ -0.78
VPS4B-201ENST00000238497 TRIM34Q9BYJ4 488 aa10.15□□□□□ -0.78
VPS4B-201ENST00000238497 ZNF341Q9BYN7 854 aa10.15□□□□□ -0.78
VPS4B-201ENST00000238497 MANSC4A6NHS7 340 aaPredicted RBP10.15□□□□□ -0.78
VPS4B-201ENST00000238497 CYP7A1P22680 504 aa10.15□□□□□ -0.78
VPS4B-201ENST00000238497 APOBRQ0VD83 1088 aa10.15□□□□□ -0.78
VPS4B-201ENST00000238497 NECTIN1Q15223 517 aa10.15□□□□□ -0.78
VPS4B-201ENST00000238497 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.15□□□□□ -0.78
VPS4B-201ENST00000238497 CCDC144CPQ8IYA2 1237 aa10.15□□□□□ -0.78
VPS4B-201ENST00000238497 MAP4K1Q92918 833 aa10.15□□□□□ -0.78
VPS4B-201ENST00000238497 MROH7-TTC4A0A0A0MT08 1334 aa10.15□□□□□ -0.79
VPS4B-201ENST00000238497 CCL15-CCL14A0A0B4J2E2 113 aa10.15□□□□□ -0.79
VPS4B-201ENST00000238497 BAG3O95817 575 aa10.15□□□□□ -0.79
VPS4B-201ENST00000238497 RXRAP19793 462 aa10.15□□□□□ -0.79
VPS4B-201ENST00000238497 CCL15Q16663 113 aa10.15□□□□□ -0.79
VPS4B-201ENST00000238497 CCDC82Q8N4S0 544 aa10.15□□□□□ -0.79
VPS4B-201ENST00000238497 GPHNQ9NQX3 736 aaPredicted RBP10.15□□□□□ -0.79
VPS4B-201ENST00000238497 WDHD1O75717 1129 aaPredicted RBP10.14□□□□□ -0.79
VPS4B-201ENST00000238497 BRD1O95696 1058 aa10.14□□□□□ -0.79
VPS4B-201ENST00000238497 CYP21A2P08686 494 aa10.14□□□□□ -0.79
VPS4B-201ENST00000238497 ZSCAN22P10073 491 aaPredicted RBP10.14□□□□□ -0.79
VPS4B-201ENST00000238497 ARID4AP29374 1257 aaPredicted RBP10.14□□□□□ -0.79
VPS4B-201ENST00000238497 MAPKAPK5Q8IW41 473 aa10.14□□□□□ -0.79
VPS4B-201ENST00000238497 KBTBD3Q8NAB2 608 aa10.14□□□□□ -0.79
VPS4B-201ENST00000238497 NSUN4Q96CB9 384 aaKnown RBP10.14□□□□□ -0.79
VPS4B-201ENST00000238497 NAP1L5Q96NT1 182 aaPredicted RBP10.14□□□□□ -0.79
VPS4B-201ENST00000238497 GPR108Q9NPR9 543 aa10.14□□□□□ -0.79
VPS4B-201ENST00000238497 FAM198AQ9UFP1 575 aa10.14□□□□□ -0.79
VPS4B-201ENST00000238497 SALL1Q9NSC2 1324 aa10.14□□□□□ -0.79
VPS4B-201ENST00000238497 PTMSP20962 102 aa10.14□□□□□ -0.79
VPS4B-201ENST00000238497 SLC9C2Q5TAH2 1124 aa10.14□□□□□ -0.79
VPS4B-201ENST00000238497 PICK1Q9NRD5 415 aa10.14□□□□□ -0.79
VPS4B-201ENST00000238497 CYP2E1P05181 493 aaPredicted RBP10.13□□□□□ -0.79
VPS4B-201ENST00000238497 FKBP1CQ5VVH2 108 aa10.13□□□□□ -0.79
VPS4B-201ENST00000238497 REM2Q8IYK8 340 aaPredicted RBP10.13□□□□□ -0.79
VPS4B-201ENST00000238497 MAGEB6Q8N7X4 407 aa10.13□□□□□ -0.79
VPS4B-201ENST00000238497 PIH1D3Q9NQM4 214 aaKnown RBP10.13□□□□□ -0.79
VPS4B-201ENST00000238497 PAPPA2Q9BXP8 1791 aa10.13□□□□□ -0.79
VPS4B-201ENST00000238497 ZBTB48P10074 688 aaPredicted RBP10.13□□□□□ -0.79
VPS4B-201ENST00000238497 MAP3K12Q12852 859 aa10.13□□□□□ -0.79
VPS4B-201ENST00000238497 TAF1CQ15572 869 aaPredicted RBP10.13□□□□□ -0.79
VPS4B-201ENST00000238497 TGFBRAP1Q8WUH2 860 aa10.13□□□□□ -0.79
VPS4B-201ENST00000238497 ABHD8Q96I13 439 aa10.13□□□□□ -0.79
VPS4B-201ENST00000238497 MCOLN1Q9GZU1 580 aa10.13□□□□□ -0.79
VPS4B-201ENST00000238497 RBSNQ9H1K0 784 aa10.13□□□□□ -0.79
VPS4B-201ENST00000238497 DDX4Q9NQI0 724 aaKnown RBP10.13□□□□□ -0.79
VPS4B-201ENST00000238497 SAP30BPQ9UHR5 308 aaKnown RBP10.13□□□□□ -0.79
VPS4B-201ENST00000238497 KIAA0100Q14667 2235 aaKnown RBP10.13□□□□□ -0.79
VPS4B-201ENST00000238497 GJA5P36382 358 aa10.13□□□□□ -0.79
VPS4B-201ENST00000238497 GIMAP6Q6P9H5 292 aa10.13□□□□□ -0.79
VPS4B-201ENST00000238497 CRACR2BQ8N4Y2 399 aaPredicted RBP10.13□□□□□ -0.79
VPS4B-201ENST00000238497 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.13□□□□□ -0.793e-7■■■■□ 22.2
VPS4B-201ENST00000238497 ZNF296Q8WUU4 475 aaPredicted RBP10.13□□□□□ -0.79
VPS4B-201ENST00000238497 HAUS7Q99871 368 aa10.13□□□□□ -0.79
VPS4B-201ENST00000238497 ZSWIM6Q9HCJ5 1215 aa10.13□□□□□ -0.79
VPS4B-201ENST00000238497 A0A1B0GUL6 1792 aa10.13□□□□□ -0.79
VPS4B-201ENST00000238497 DDTLA6NHG4 134 aaPredicted RBP10.12□□□□□ -0.79
VPS4B-201ENST00000238497 GPR25O00155 361 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 IGF2BP3O00425 579 aaKnown RBP eCLIP10.12□□□□□ -0.79
VPS4B-201ENST00000238497 RPS6KB1P23443 525 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 USP5P45974 858 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 CUL4AQ13619 759 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 MAP3K11Q16584 847 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 RALYLQ86SE5 291 aaKnown RBP10.12□□□□□ -0.79
VPS4B-201ENST00000238497 CCDC84Q86UT8 332 aaPredicted RBP10.12□□□□□ -0.79
VPS4B-201ENST00000238497 ERO1BQ86YB8 467 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 IFNL1Q8IU54 200 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 BICD2Q8TD16 824 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 SH3RF3Q8TEJ3 882 aaPredicted RBP10.12□□□□□ -0.79
VPS4B-201ENST00000238497 OSBP2Q969R2 916 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 TTC14Q96N46 770 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 R3HDMLQ9H3Y0 253 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 SSC5DA1L4H1 1573 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 IRF6O14896 467 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 ALDH1A1P00352 501 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 INHBEP58166 350 aa10.12□□□□□ -0.79
VPS4B-201ENST00000238497 DYNLL1P63167 89 aaKnown RBP10.12□□□□□ -0.79
VPS4B-201ENST00000238497 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.12□□□□□ -0.79
VPS4B-201ENST00000238497 RRAGDQ9NQL2 400 aaPredicted RBP10.12□□□□□ -0.79
VPS4B-201ENST00000238497 ZHX2Q9Y6X8 837 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms