RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Gm3409A0A0G2JE67 319 aa17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Top1Q04750 767 aaKnown RBP17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Oxr1Q4KMM3 866 aa17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Gtf2iQ9ESZ8 998 aaKnown RBP17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Ltb4r2Q9JJL9 360 aa17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Gpbp1Q6NXH3 473 aaKnown RBP17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Tmx4Q8C0L0 335 aa17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Plcd3Q8K2J0 785 aa17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Popdc2Q9ES82 367 aa17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Cabp5Q9JLK3 173 aa17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Epb41l3Q9WV92 929 aa17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Pde6aP27664 859 aa17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Sptlc3Q8BG54 563 aa17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Sec62Q8BU14 398 aaKnown RBP17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Atp1a4Q9WV27 1032 aa17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Msh6P54276 1358 aaKnown RBP17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Pak1O88643 545 aa17.41■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Tax1bp1Q3UKC1 814 aaKnown RBP17.41■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Susd4Q8BH32 490 aa17.41■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Gm5934D3Z4U6 212 aa17.41■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Wdr70Q3TWF6 657 aa17.41■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Hdhd2Q3UGR5 259 aa17.41■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 LpxnQ99N69 386 aa17.41■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Nom1Q3UFM5 854 aaKnown RBP17.41■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Ccdc42Q5SV66 316 aa17.41■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Nf2P46662 596 aa17.41■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Lins1Q3U1D0 764 aa17.41■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Sp4Q62445 782 aa17.41■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Gm1993A6X8I0 212 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 SlxD3Z347 212 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Ccdc114Q3UX62 658 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Ccdc148Q6P5U8 527 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Sgsm1Q8BPQ7 1093 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Stag1Q9D3E6 1258 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Trpm1Q2TV84 1622 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Ranbp1P34022 203 aaKnown RBP17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Dynll1P63168 89 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Eya3P97480 510 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Krt15Q61414 452 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Atp1a2Q6PIE5 1020 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Rbm42Q91V81 474 aaKnown RBP17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Efhd1Q9D4J1 240 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Gdf11Q9Z1W4 405 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Cdk5rap2Q8K389 1822 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Armc2Q3URY6 854 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Lrrc36Q3V0M2 755 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Oxsr1Q6P9R2 527 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Asic3Q6X1Y6 530 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Dnaaf2Q8BPI1 814 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 AK157302I3ITR1 129 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Sept1P42209 366 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Pald1P70261 859 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Desi2Q9D291 194 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Isca1Q9D924 129 aa17.4■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Cetn1P41209 172 aa17.39■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Samsn1P57725 372 aa17.39■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 P4ha1Q60715 534 aa17.39■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Arhgef18Q6P9R4 1021 aa17.39■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Slc44a1Q6X893 653 aa17.39■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Nop53Q8BK35 484 aaKnown RBP17.39■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Ccnt1Q9QWV9 724 aaKnown RBP17.39■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 A0A1Y7VML8 143 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Ube3aO08759 870 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Cd3dP04235 173 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Prpf38aQ4FK66 312 aaKnown RBP17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Nxf2Q4ZGD8 691 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Ino80Q6ZPV2 1559 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Kif22Q3V300 660 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 PicalmQ7M6Y3 660 aaKnown RBP17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Map3k11Q80XI6 850 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Mkrn1Q9QXP6 481 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Golga5Q9QYE6 729 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Vmn2r23E9PXI5 849 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 GabrdP22933 449 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Serpinc1P32261 465 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Spata18Q0P557 537 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 C87499Q3UX49 493 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 VmacQ8BP01 174 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Fam177a1Q8BR63 207 aa17.39■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Card6E9PWH2 1175 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Abcb4P21440 1276 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Gas8Q60779 478 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Arid3aQ62431 601 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Snd1Q78PY7 910 aaKnown RBP17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Iffo1Q8BXL9 562 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Kcnq3Q8K3F6 873 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Sh3bp1P55194 680 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Tcerg1lQ3B807 590 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 QarsQ8BML9 775 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Arhgef2Q60875 985 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Atg9aQ68FE2 551 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Tbc1d31Q6NXY1 996 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Sdad1Q80UZ2 687 aaKnown RBP17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Arid5bQ8BM75 1188 aaKnown RBP17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 NelfbQ8C4Y3 580 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Cxcl11Q9JHH5 100 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Prpf40aQ9R1C7 953 aaKnown RBP17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Csrnp2Q8BGQ2 534 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Lzts2Q91YU6 671 aa17.38■□□□□ 0.37
Ccdc88b-201ENSMUST00000113440 Aox4Q3TYQ9 1336 aa17.37■□□□□ 0.37
Retrieved 100 of 22,080 RNA–protein pairs in 25.5 ms