RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Gm9112A2AI92 75 aa9,34□□□□□ -0,91
Ccdc88a-201ENSMUST00000040182 Krtap14O08640 167 aa9,33□□□□□ -0,92
Ccdc88a-201ENSMUST00000040182 D6Ertd527eA0A0N4SWI3 464 aa9,32□□□□□ -0,92
Ccdc88a-201ENSMUST00000040182 Gm21887J3QQ04 176 aa9,3□□□□□ -0,92
Ccdc88a-201ENSMUST00000040182 Unc80Q8BLN6 3261 aa9,28□□□□□ -0,92
Ccdc88a-201ENSMUST00000040182 Lama1P19137 3084 aa9,28□□□□□ -0,92
Ccdc88a-201ENSMUST00000040182 Dmxl2Q8BPN8 3032 aa9,26□□□□□ -0,93
Ccdc88a-201ENSMUST00000040182 Frem2Q6NVD0 3160 aa9,26□□□□□ -0,93
Ccdc88a-201ENSMUST00000040182 Megf8P60882 2789 aa9,25□□□□□ -0,93
Ccdc88a-201ENSMUST00000040182 Gm36176A0A1W2P8D5 158 aa9,23□□□□□ -0,93
Ccdc88a-201ENSMUST00000040182 Krtap13O88375 197 aa9,21□□□□□ -0,94
Ccdc88a-201ENSMUST00000040182 Adgrg4B7ZCC9 3073 aa9,21□□□□□ -0,94
Ccdc88a-201ENSMUST00000040182 2310061N02RikQ9D6S9 174 aa9,19□□□□□ -0,94
Ccdc88a-201ENSMUST00000040182 Tenm4Q3UHK6 2771 aa9,18□□□□□ -0,94
Ccdc88a-201ENSMUST00000040182 Cdh23Q99PF4 3354 aa9,15□□□□□ -0,94
Ccdc88a-201ENSMUST00000040182 Celsr3Q91ZI0 3301 aa9,01□□□□□ -0,97
Ccdc88a-201ENSMUST00000040182 VwfQ8CIZ8 2813 aa9□□□□□ -0,97
Ccdc88a-201ENSMUST00000040182 Helz2E9QAM5 2947 aaKnown RBP8,96□□□□□ -0,97
Ccdc88a-201ENSMUST00000040182 Lrrc37aB1AWG4 3215 aa8,95□□□□□ -0,98
Ccdc88a-201ENSMUST00000040182 Zfhx3Q61329 3726 aa8,93□□□□□ -0,98
Ccdc88a-201ENSMUST00000040182 Gm20537G3UYK7 97 aa8,9□□□□□ -0,98
Ccdc88a-201ENSMUST00000040182 B930094E09RikQ8C4T2 136 aa8,84□□□□□ -0,99
Ccdc88a-201ENSMUST00000040182 Gm9507D3Z5T3 223 aa8,83□□□□□ -1
Ccdc88a-201ENSMUST00000040182 Myo15aQ9QZZ4 3511 aa8,77□□□□□ -1,01
Ccdc88a-201ENSMUST00000040182 Akap9Q70FJ1 3797 aa8,77□□□□□ -1,01
Ccdc88a-201ENSMUST00000040182 Prm2P07978 107 aa8,74□□□□□ -1,01
Ccdc88a-201ENSMUST00000040182 OtogO55225 2910 aa8,74□□□□□ -1,01
Ccdc88a-201ENSMUST00000040182 Vps13cQ8BX70 3748 aa8,74□□□□□ -1,01
Ccdc88a-201ENSMUST00000040182 Dchs2A0A0A6YW72 3346 aa8,71□□□□□ -1,02
Ccdc88a-201ENSMUST00000040182 A930033H14RikG5E8X6 103 aa8,71□□□□□ -1,02
Ccdc88a-201ENSMUST00000040182 Brca2P97929 3329 aa8,67□□□□□ -1,02
Ccdc88a-201ENSMUST00000040182 Gm17402F6Z0L5 76 aa8,65□□□□□ -1,02
Ccdc88a-201ENSMUST00000040182 Krtap10-4Q08EG8 221 aa8,65□□□□□ -1,03
Ccdc88a-201ENSMUST00000040182 Szt2A2A9C3 3431 aa8,64□□□□□ -1,03
Ccdc88a-201ENSMUST00000040182 Gm17416Q30KP4 66 aa8,62□□□□□ -1,03
Ccdc88a-201ENSMUST00000040182 Tenm2Q9WTS5 2764 aa8,62□□□□□ -1,03
Ccdc88a-201ENSMUST00000040182 Gm5965D3Z724 196 aa8,61□□□□□ -1,03
Ccdc88a-201ENSMUST00000040182 2310079G19RikQ9D6L6 185 aa8,61□□□□□ -1,03
Ccdc88a-201ENSMUST00000040182 Ank2Q8C8R3 3898 aa8,55□□□□□ -1,04
Ccdc88a-201ENSMUST00000040182 Krtap10-10A0A1W2P7T6 217 aa8,55□□□□□ -1,04
Ccdc88a-201ENSMUST00000040182 DmdP11531 3678 aa8,54□□□□□ -1,04
Ccdc88a-201ENSMUST00000040182 2310057N15RikQ9D6T8 200 aa8,53□□□□□ -1,04
Ccdc88a-201ENSMUST00000040182 Fbn1Q61554 2873 aaKnown RBP8,49□□□□□ -1,05
Ccdc88a-201ENSMUST00000040182 Col6a3E9PWQ3 3284 aa8,48□□□□□ -1,05
Ccdc88a-201ENSMUST00000040182 SpegQ62407 3262 aa8,44□□□□□ -1,06
Ccdc88a-201ENSMUST00000040182 VcanQ62059 3357 aa8,44□□□□□ -1,06
Ccdc88a-201ENSMUST00000040182 Col7a1Q63870 2944 aa8,4□□□□□ -1,07
Ccdc88a-201ENSMUST00000040182 Gm2696A0A1W2P709 240 aa8,4□□□□□ -1,07
Ccdc88a-201ENSMUST00000040182 2210017I01RikA0A0A6YVV1 95 aa8,37□□□□□ -1,07
Ccdc88a-201ENSMUST00000040182 4933428G20RikQ9D3X4 101 aa8,31□□□□□ -1,08
Ccdc88a-201ENSMUST00000040182 Dchs1E9PVD3 3291 aa8,24□□□□□ -1,09
Ccdc88a-201ENSMUST00000040182 SpenQ62504 3644 aaKnown RBP8,2□□□□□ -1,1
Ccdc88a-201ENSMUST00000040182 Cmya5Q70KF4 3739 aa8,19□□□□□ -1,1
Ccdc88a-201ENSMUST00000040182 Muc5acE9QAQ8 3455 aa8,13□□□□□ -1,11
Ccdc88a-201ENSMUST00000040182 Gm19668J3QMD1 248 aa8,05□□□□□ -1,12
Ccdc88a-201ENSMUST00000040182 Lama5Q61001 3718 aa8,03□□□□□ -1,12
Ccdc88a-201ENSMUST00000040182 Muc6Q80T03 2850 aa8,02□□□□□ -1,13
Ccdc88a-201ENSMUST00000040182 Smg1Q8BKX6 3658 aaKnown RBP8,02□□□□□ -1,13
Ccdc88a-201ENSMUST00000040182 RelnQ60841 3461 aa8,01□□□□□ -1,13
Ccdc88a-201ENSMUST00000040182 Wdfy3Q6VNB8 3508 aa7,98□□□□□ -1,13
Ccdc88a-201ENSMUST00000040182 BsnO88737 3942 aa7,9□□□□□ -1,15
Ccdc88a-201ENSMUST00000040182 Csmd1Q923L3 3564 aa7,86□□□□□ -1,15
Ccdc88a-201ENSMUST00000040182 Zfhx4Q9JJN2 3550 aa7,81□□□□□ -1,16
Ccdc88a-201ENSMUST00000040182 Gm9918Q8BUR5 174 aa7,68□□□□□ -1,18
Ccdc88a-201ENSMUST00000040182 Muc4Q8JZM8 3443 aa7,68□□□□□ -1,18
Ccdc88a-201ENSMUST00000040182 Gm11939A2A592 99 aa7,68□□□□□ -1,18
Ccdc88a-201ENSMUST00000040182 Gm9736A0A1W2P7N1 277 aa7,66□□□□□ -1,18
Ccdc88a-201ENSMUST00000040182 Krtap13-1Q8K198 168 aa7,64□□□□□ -1,19
Ccdc88a-201ENSMUST00000040182 Gm884A2A9H6 3643 aa7,61□□□□□ -1,19
Ccdc88a-201ENSMUST00000040182 Csmd2V9GX34 3611 aa7,61□□□□□ -1,19
Ccdc88a-201ENSMUST00000040182 Krtap3-1A2A591 98 aa7,52□□□□□ -1,21
Ccdc88a-201ENSMUST00000040182 LystP97412 3788 aa7,47□□□□□ -1,21
Ccdc88a-201ENSMUST00000040182 Krtap3-2Q9D638 99 aa7,45□□□□□ -1,22
Ccdc88a-201ENSMUST00000040182 Krtap3-3Q9D7P0 99 aa7,45□□□□□ -1,22
Ccdc88a-201ENSMUST00000040182 Krtap19-5O08632 62 aa7,39□□□□□ -1,23
Ccdc88a-201ENSMUST00000040182 Xirp2Q4U4S6 3784 aa7,37□□□□□ -1,23
Ccdc88a-201ENSMUST00000040182 Csmd3Q80T79 3707 aa7,21□□□□□ -1,26
Ccdc88a-201ENSMUST00000040182 Crct1Q6PAI5 102 aa7,13□□□□□ -1,27
Ccdc88a-201ENSMUST00000040182 Svep1A2AVA0 3567 aa7,13□□□□□ -1,27
Ccdc88a-201ENSMUST00000040182 Sprr2a3Q4KL71 83 aa7,13□□□□□ -1,27
Ccdc88a-201ENSMUST00000040182 Sprr2a1Q9CQK8 83 aa7,13□□□□□ -1,27
Ccdc88a-201ENSMUST00000040182 Gm10318A0A1W2P728 225 aa7,13□□□□□ -1,27
Ccdc88a-201ENSMUST00000040182 Krtap1-5A2A590 122 aa7,12□□□□□ -1,27
Ccdc88a-201ENSMUST00000040182 Krtap19-9aF8WH65 55 aa7,12□□□□□ -1,27
Ccdc88a-201ENSMUST00000040182 Krtap7-1Q9D3I6 87 aa7,09□□□□□ -1,27
Ccdc88a-201ENSMUST00000040182 Hspg2Q05793 3707 aaKnown RBP7,08□□□□□ -1,28
Ccdc88a-201ENSMUST00000040182 Gm6358A0A087WPH4 74 aa7,07□□□□□ -1,28
Ccdc88a-201ENSMUST00000040182 Dnah3Q8BW94 4083 aa7,03□□□□□ -1,28
Ccdc88a-201ENSMUST00000040182 Dnah7bL7N1Y0 4068 aa7,03□□□□□ -1,28
Ccdc88a-201ENSMUST00000040182 Krtap19-9bQ99NG9 58 aa7,01□□□□□ -1,29
Ccdc88a-201ENSMUST00000040182 Krtap8-1O08633 61 aa6,96□□□□□ -1,29
Ccdc88a-201ENSMUST00000040182 CubnQ9JLB4 3623 aa6,83□□□□□ -1,32
Ccdc88a-201ENSMUST00000040182 Dnah7cA0A087WR13 4024 aa6,81□□□□□ -1,32
Ccdc88a-201ENSMUST00000040182 Krtap1-4Q3V2D6 188 aa6,79□□□□□ -1,32
Ccdc88a-201ENSMUST00000040182 Dnah7aE9Q0T8 4024 aa6,78□□□□□ -1,32
Ccdc88a-201ENSMUST00000040182 Huwe1Q7TMY8 4377 aaKnown RBP6,7□□□□□ -1,34
Ccdc88a-201ENSMUST00000040182 Krtap12-1Q9Z287 130 aa6,69□□□□□ -1,34
Ccdc88a-201ENSMUST00000040182 Vps13bQ80TY5 3993 aa6,68□□□□□ -1,34
Ccdc88a-201ENSMUST00000040182 Gm18596A0A1W2P860 280 aa6,68□□□□□ -1,34
Ccdc88a-201ENSMUST00000040182 Sprr2kO70562 68 aa6,67□□□□□ -1,34
Retrieved 100 of 22,080 RNA–protein pairs in 71,1 ms