RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Gm10337F7DEP7 55 aa11.42□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Gm7075D3Z497 112 aa11.41□□□□□ -0.58
Ctcf-201ENSMUST00000005841 SnurfQ9WU12 71 aa11.41□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Col7a1Q63870 2944 aa11.41□□□□□ -0.58
Ctcf-201ENSMUST00000005841 CenpeQ6RT24 2474 aaKnown RBP11.41□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Tcl1b5P56845 121 aa11.4□□□□□ -0.58
Ctcf-201ENSMUST00000005841 Ighv10-1A0A0B4J1J6 119 aa11.4□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Sptbn4E9PX29 2561 aa11.39□□□□□ -0.59
Ctcf-201ENSMUST00000005841 H2al1bA0A087WP11 105 aa11.39□□□□□ -0.59
Ctcf-201ENSMUST00000005841 H2al1kJ3QP08 105 aa11.39□□□□□ -0.59
Ctcf-201ENSMUST00000005841 H2al1eQ810S6 105 aa11.39□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Dph3Q8K0W9 82 aa11.39□□□□□ -0.59
Ctcf-201ENSMUST00000005841 H2al1mQ9DAD9 105 aa11.39□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Ubl5Q9EPV8 73 aa11.39□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Itpr1P11881 2749 aa11.39□□□□□ -0.59
Ctcf-201ENSMUST00000005841 NrgnP60761 78 aa11.39□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Defb18Q30KP5 85 aa11.39□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Ep300B2RWS6 2412 aa11.38□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Defa23Q5G866 93 aa11.38□□□□□ -0.59
Ctcf-201ENSMUST00000005841 AY074887Q8R5F9 132 aa11.37□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Igkv4-58A0A0G2JGI6 119 aa11.37□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Klk12B2RVZ0 247 aa11.37□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Lyrm9Q3UN90 78 aa11.36□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Igkv8-34A0A0G2JDU0 121 aa11.36□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Bles03Q8VD62 251 aa11.36□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Brk1Q91VR8 75 aa11.36□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Msrb1Q9JLC3 116 aa11.36□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Trbv13-2A0A140T8N6 113 aa11.35□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Tenm3Q9WTS6 2715 aa11.34□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Vpreb1P13372 142 aa11.34□□□□□ -0.59
Ctcf-201ENSMUST00000005841 Gm9913Q8BQQ2 135 aa11.34□□□□□ -0.59
Ctcf-201ENSMUST00000005841 2010109I03RikQ9CQ11 111 aa11.34□□□□□ -0.59
Ctcf-201ENSMUST00000005841 B230307C23RikQ8BLB2 64 aa11.33□□□□□ -0.6
Ctcf-201ENSMUST00000005841 Higd2aQ9CQJ1 106 aa11.33□□□□□ -0.6
Ctcf-201ENSMUST00000005841 Igkv4-54A0A0G2JES9 117 aa11.32□□□□□ -0.6
Ctcf-201ENSMUST00000005841 Q8BT88 171 aa11.32□□□□□ -0.6
Ctcf-201ENSMUST00000005841 Tomm7Q9D173 55 aa11.32□□□□□ -0.6
Ctcf-201ENSMUST00000005841 Gm9805F6YK59 57 aa11.31□□□□□ -0.6
Ctcf-201ENSMUST00000005841 9530003J23RikQ8BM26 151 aa11.31□□□□□ -0.6
Ctcf-201ENSMUST00000005841 Trav13-2A0A075B649 110 aa11.31□□□□□ -0.6
Ctcf-201ENSMUST00000005841 Krtap11-1E9Q2E9 183 aa11.31□□□□□ -0.6
Ctcf-201ENSMUST00000005841 Dnah1E9Q8T7 4250 aa11.31□□□□□ -0.6
Ctcf-201ENSMUST00000005841 Igkv8-28A0A0G2JE47 121 aa11.31□□□□□ -0.6
Ctcf-201ENSMUST00000005841 Gm11213A0A1B0GR83 88 aa11.31□□□□□ -0.6
Ctcf-201ENSMUST00000005841 BikO70337 150 aa11.3□□□□□ -0.6
Ctcf-201ENSMUST00000005841 Klk9Q32M27 251 aa11.28□□□□□ -0.6
Ctcf-201ENSMUST00000005841 Pde6gP09174 87 aa11.28□□□□□ -0.6
Ctcf-201ENSMUST00000005841 A530084C06RikQ3UTW2 186 aa11.28□□□□□ -0.6
Ctcf-201ENSMUST00000005841 2310034G01RikA0A286YDL3 209 aa11.28□□□□□ -0.6
Ctcf-201ENSMUST00000005841 Gm7257D3YX25 99 aa11.28□□□□□ -0.6
Ctcf-201ENSMUST00000005841 MplkipQ9D011 178 aa11.27□□□□□ -0.6
Ctcf-201ENSMUST00000005841 Vpreb2P13373 142 aa11.27□□□□□ -0.61
Ctcf-201ENSMUST00000005841 UqcrqQ9CQ69 82 aa11.27□□□□□ -0.61
Ctcf-201ENSMUST00000005841 Hivep2Q3UHF7 2430 aa11.27□□□□□ -0.61
Ctcf-201ENSMUST00000005841 Nav3Q80TN7 2359 aa11.27□□□□□ -0.61
Ctcf-201ENSMUST00000005841 Gm10401E9Q3K6 71 aa11.25□□□□□ -0.61
Ctcf-201ENSMUST00000005841 Lamtor3O88653 124 aa11.25□□□□□ -0.61
Ctcf-201ENSMUST00000005841 Elof1P60003 83 aa11.25□□□□□ -0.61
Ctcf-201ENSMUST00000005841 OtoglF7A4A7 2325 aa11.25□□□□□ -0.61
Ctcf-201ENSMUST00000005841 Rbm3O89086 153 aaKnown RBP11.25□□□□□ -0.61
Ctcf-201ENSMUST00000005841 Ankrd17Q99NH0 2603 aaKnown RBP11.25□□□□□ -0.61
Ctcf-201ENSMUST00000005841 Rpl35aO55142 110 aa11.24□□□□□ -0.61
Ctcf-201ENSMUST00000005841 Cd99Q8VCN6 175 aa11.24□□□□□ -0.61
Ctcf-201ENSMUST00000005841 Wfdc12Q9JHY3 85 aa11.24□□□□□ -0.61
Ctcf-201ENSMUST00000005841 Nbeal1E9PYP2 2688 aa11.24□□□□□ -0.61
Ctcf-201ENSMUST00000005841 Gm10518F6UQQ9 182 aa11.23□□□□□ -0.61
Ctcf-201ENSMUST00000005841 SonQ9QX47 2444 aaKnown RBP11.22□□□□□ -0.61
Ctcf-201ENSMUST00000005841 A930002H24RikQ8C8Y3 163 aa11.22□□□□□ -0.61
Ctcf-201ENSMUST00000005841 NipblQ6KCD5 2798 aaKnown RBP11.22□□□□□ -0.61
Ctcf-201ENSMUST00000005841 Gm7276Q3TYW4 209 aa11.21□□□□□ -0.62
Ctcf-201ENSMUST00000005841 Bean1Q9EQG5 255 aa11.21□□□□□ -0.62
Ctcf-201ENSMUST00000005841 Tep1P97499 2629 aa11.2□□□□□ -0.62
Ctcf-201ENSMUST00000005841 A330070K13RikQ8CA53 115 aa11.2□□□□□ -0.62
Ctcf-201ENSMUST00000005841 Igkv1-88A0A140T8N1 120 aa11.19□□□□□ -0.62
Ctcf-201ENSMUST00000005841 C2cd3Q52KB6 2323 aa11.18□□□□□ -0.62
Ctcf-201ENSMUST00000005841 Gm37389A0A0A6YW05 95 aa11.18□□□□□ -0.62
Ctcf-201ENSMUST00000005841 P06320 134 aa11.18□□□□□ -0.62
Ctcf-201ENSMUST00000005841 Gm10570F6VB42 170 aa11.17□□□□□ -0.62
Ctcf-201ENSMUST00000005841 Zfyve26Q5DU37 2529 aa11.16□□□□□ -0.62
Ctcf-201ENSMUST00000005841 PrcdQ00LT2 53 aa11.16□□□□□ -0.62
Ctcf-201ENSMUST00000005841 Igkv4-92A0A0B4J1I2 117 aa11.16□□□□□ -0.62
Ctcf-201ENSMUST00000005841 Csmd3Q80T79 3707 aa11.15□□□□□ -0.62
Ctcf-201ENSMUST00000005841 Prh1P05142 261 aa11.15□□□□□ -0.62
Ctcf-201ENSMUST00000005841 Ly6c2P0CW03 131 aa11.15□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Usp9xP70398 2559 aaKnown RBP11.14□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Gm16181B0V2H2 73 aa11.14□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Mrpl55Q9CZ83 127 aa11.14□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Ccl21aP84444 133 aa11.14□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Ccl21bP86792 133 aa11.14□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Ccl21cP86793 133 aa11.14□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Gm17509Q9CZ61 145 aa11.14□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Gm37013Q8K491 104 aa11.14□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Mapk1ip1lQ8BH93 242 aa11.13□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Gm5617Q91VN2 117 aa11.13□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Pet100P0DJE0 76 aa11.12□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Q8R092 253 aa11.12□□□□□ -0.63
Ctcf-201ENSMUST00000005841 BC067074F6RXI4 2391 aa11.12□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Igkv8-16A0A0G2JDG9 121 aa11.12□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Reg3dQ9QUS9 175 aa11.11□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Defb37Q7TMD2 62 aa11.1□□□□□ -0.63
Retrieved 100 of 22,080 RNA–protein pairs in 84.5 ms