RNA–Protein interactions for RNA: ENSMUST00000041643.3

Pcif1-201, Transcript of Phosphorylated CTD-interacting factor 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcif1, Length 5,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1-201ENSMUST00000041643 Fgfbp3Q1HCM0 245 aa8.73□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Tln1P26039 2541 aaKnown RBP8.73□□□□□ -1.01
Pcif1-201ENSMUST00000041643 SetxA2AKX3 2646 aa8.73□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Gm9922Q8C3P1 144 aa8.73□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Dnah12Q3V0Q1 3086 aa8.72□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Trav7-6A0A075B640 112 aa8.72□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Trav13-2A0A075B649 110 aa8.72□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Ighv1-59A0A0A6YXE0 117 aa8.72□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Ccl25O35903 144 aa8.72□□□□□ -1.01
Pcif1-201ENSMUST00000041643 FcorP0DJI6 106 aa8.72□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Defb47Q30KN1 79 aa8.72□□□□□ -1.01
Pcif1-201ENSMUST00000041643 4930564D02RikQ9D4S4 103 aa8.72□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Sptbn4E9PX29 2561 aa8.72□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Plscr4P58196 326 aa8.72□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Ighv1-66A0A075B5X5 117 aa8.72□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Trav4d-3A0A075B625 110 aa8.72□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Samd13D3YUG0 102 aa8.72□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Cox11Q6P8I6 275 aa8.72□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Trav14d-3-dv8A0A075B619 120 aa8.71□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Gm10735Q3US96 136 aa8.71□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Chchd7Q8K2Q5 85 aa8.71□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Xcl1P47993 114 aa8.71□□□□□ -1.01
Pcif1-201ENSMUST00000041643 Bri3P28662 125 aa8.71□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Gm3618D3Z4P5 127 aa8.71□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Gm2916Q9D9B9 127 aa8.71□□□□□ -1.02
Pcif1-201ENSMUST00000041643 P18527 97 aa8.7□□□□□ -1.02
Pcif1-201ENSMUST00000041643 MrapQ9D159 127 aa8.7□□□□□ -1.02
Pcif1-201ENSMUST00000041643 PkigO70139 76 aa8.7□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Gm16223Q8CBM3 117 aa8.7□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Cd164l2Q9D6W7 172 aa8.7□□□□□ -1.02
Pcif1-201ENSMUST00000041643 CrygdP04342 174 aa8.7□□□□□ -1.02
Pcif1-201ENSMUST00000041643 CrygeQ03740 174 aa8.7□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Trav13-1A0A075B644 110 aa8.7□□□□□ -1.02
Pcif1-201ENSMUST00000041643 P0C913 63 aa8.69□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Usp34Q6ZQ93 3582 aa8.69□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Fgf6P21658 208 aa8.69□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Iglc1A0A0G2JE99 106 aa8.69□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Gm45213A0A0U1RNZ6 101 aa8.69□□□□□ -1.02
Pcif1-201ENSMUST00000041643 P01843 105 aa8.69□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Defa16P50714 93 aa8.69□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Igkv1-88A0A140T8N1 120 aa8.69□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Srsf12Q8C8K3 266 aa8.68□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Gm17472A0A075B683 117 aa8.68□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Igkv1-122A0A140T8M9 119 aa8.67□□□□□ -1.02
Pcif1-201ENSMUST00000041643 1700010B08RikQ9DAI7 102 aa8.67□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Rpl18aP62717 176 aaKnown RBP8.67□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Cep350E9Q309 3095 aa8.67□□□□□ -1.02
Pcif1-201ENSMUST00000041643 AcanQ61282 2132 aaKnown RBP8.67□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Cox7cP17665 63 aa8.67□□□□□ -1.02
Pcif1-201ENSMUST00000041643 MplkipQ9D011 178 aa8.67□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Gm17577J3QNF7 156 aa8.67□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Cd99Q8VCN6 175 aa8.67□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Zfyve26Q5DU37 2529 aa8.67□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Gm44965A0A0N4SVR3 59 aa8.67□□□□□ -1.02
Pcif1-201ENSMUST00000041643 CnfnQ6PCW6 111 aa8.67□□□□□ -1.02
Pcif1-201ENSMUST00000041643 U90926O08546 118 aa8.66□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Rpl32P62911 135 aaKnown RBP8.66□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Igkv6-13A0A0G2JGY3 119 aa8.65□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Gm10509O88255 85 aa8.65□□□□□ -1.02
Pcif1-201ENSMUST00000041643 Pcp4P63054 62 aa8.65□□□□□ -1.02
Pcif1-201ENSMUST00000041643 D730001G18RikA0A087WQU7 115 aa8.64□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Defa7P50705 93 aa8.64□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Ociad2Q9D8W7 154 aa8.64□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Q9DAB9 146 aa8.64□□□□□ -1.03
Pcif1-201ENSMUST00000041643 B230217C12RikE9Q3Z1 139 aa8.63□□□□□ -1.03
Pcif1-201ENSMUST00000041643 B9d2Q3UK10 175 aa8.63□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Gm12057A0A087WR21 115 aa8.63□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Igkv8-26A0A075B5N5 123 aa8.63□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Defa2P28309 93 aa8.63□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Polr2kQ63871 58 aa8.63□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Triap1Q9D8Z2 76 aa8.62□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Znf580Q9DB38 172 aa8.62□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Trav13n-2A0A0G2JF93 110 aa8.62□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Ighv1-72P01751 139 aa8.62□□□□□ -1.03
Pcif1-201ENSMUST00000041643 LbhQ9CX60 105 aa8.61□□□□□ -1.03
Pcif1-201ENSMUST00000041643 PcntP48725 2898 aa8.61□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Ighv2-6-8A0A0A6YWY9 116 aa8.61□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Smlr1J3QMJ4 66 aa8.61□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Klk12B2RVZ0 247 aa8.61□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Rbx1P62878 108 aa8.61□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Gm10300Q8C8P7 189 aa8.61□□□□□ -1.03
Pcif1-201ENSMUST00000041643 2010109I03RikQ9CQ11 111 aa8.61□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Trav11A0A0B4J1J9 114 aa8.61□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Ubl5Q9EPV8 73 aa8.61□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Sorl1O88307 2215 aaKnown RBP8.61□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Gata1P17679 413 aa8.6□□□□□ -1.03
Pcif1-201ENSMUST00000041643 MifP34884 115 aaKnown RBP8.6□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Ube2d3P61079 147 aa8.6□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Ube2d2P62838 147 aa8.6□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Shisa2Q8QZV2 295 aa8.6□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Hrct1Q9D6B9 109 aa8.6□□□□□ -1.03
Pcif1-201ENSMUST00000041643 A0A286YE02 88 aa8.59□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Ufsp1Q9CZP0 217 aa8.59□□□□□ -1.03
Pcif1-201ENSMUST00000041643 BC107364E9Q5A2 140 aa8.59□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Lama3Q61789 3330 aa8.59□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Gm10251J3QPM5 127 aa8.59□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Sigmar1O55242 223 aa8.59□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Ighv1-62-2A0A0A6YXZ4 119 aa8.59□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Krtap27-1E9PX37 202 aa8.59□□□□□ -1.03
Pcif1-201ENSMUST00000041643 Pla2g1bQ9Z0Y2 146 aa8.58□□□□□ -1.04
Retrieved 100 of 22,080 RNA–protein pairs in 158.6 ms