RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Defa1P11477 93 aa12.17□□□□□ -0.46
Trim28-201ENSMUST00000005705 Rpl32P62911 135 aaKnown RBP12.17□□□□□ -0.46
Trim28-201ENSMUST00000005705 Cfc1P97766 202 aa12.16□□□□□ -0.46
Trim28-201ENSMUST00000005705 Srsf2Q62093 221 aaKnown RBP12.16□□□□□ -0.46
Trim28-201ENSMUST00000005705 Mob4Q6PEB6 225 aa12.16□□□□□ -0.46
Trim28-201ENSMUST00000005705 Ifi27l2aQ8R412 90 aa12.16□□□□□ -0.46
Trim28-201ENSMUST00000005705 Gm2564F6Z9S8 108 aa12.16□□□□□ -0.46
Trim28-201ENSMUST00000005705 Ighv3-1A0A075B5S6 116 aa12.15□□□□□ -0.46
Trim28-201ENSMUST00000005705 C920008G01RikA0A0B4J1N1 112 aa12.15□□□□□ -0.46
Trim28-201ENSMUST00000005705 Gm10251J3QPM5 127 aa12.15□□□□□ -0.46
Trim28-201ENSMUST00000005705 Nat8b-psE0CYC6 232 aa12.15□□□□□ -0.46
Trim28-201ENSMUST00000005705 PlaurP35456 327 aa12.15□□□□□ -0.46
Trim28-201ENSMUST00000005705 Pip4p1Q3TWL2 284 aa12.15□□□□□ -0.46
Trim28-201ENSMUST00000005705 Ighv8-12A0A0G2JDE1 119 aa12.15□□□□□ -0.47
Trim28-201ENSMUST00000005705 Samd5Q3V1H9 173 aa12.15□□□□□ -0.47
Trim28-201ENSMUST00000005705 LhbO09108 141 aa12.14□□□□□ -0.47
Trim28-201ENSMUST00000005705 Trav9-2A0A075B647 113 aa12.14□□□□□ -0.47
Trim28-201ENSMUST00000005705 Trav9-4A0A0B4J1K2 113 aa12.14□□□□□ -0.47
Trim28-201ENSMUST00000005705 Ifitm10Q8BR26 201 aa12.14□□□□□ -0.47
Trim28-201ENSMUST00000005705 Gemin7Q9CWY4 129 aa12.14□□□□□ -0.47
Trim28-201ENSMUST00000005705 Gm5878E9PUB3 99 aa12.13□□□□□ -0.47
Trim28-201ENSMUST00000005705 Defb47Q30KN1 79 aa12.13□□□□□ -0.47
Trim28-201ENSMUST00000005705 Odf1Q61999 247 aa12.13□□□□□ -0.47
Trim28-201ENSMUST00000005705 P01750 117 aa12.13□□□□□ -0.47
Trim28-201ENSMUST00000005705 Ighv1-82A0A0G2JEU7 117 aa12.13□□□□□ -0.47
Trim28-201ENSMUST00000005705 Gm45717A0A1B0GT68 152 aa12.13□□□□□ -0.47
Trim28-201ENSMUST00000005705 Defb45Q3V490 66 aa12.13□□□□□ -0.47
Trim28-201ENSMUST00000005705 Avpi1Q9D7H4 142 aa12.13□□□□□ -0.47
Trim28-201ENSMUST00000005705 Trav3-4A0A075B654 114 aa12.12□□□□□ -0.47
Trim28-201ENSMUST00000005705 Mapk1ip1lQ8BH93 242 aa12.12□□□□□ -0.47
Trim28-201ENSMUST00000005705 P06328 117 aa12.12□□□□□ -0.47
Trim28-201ENSMUST00000005705 Srp14P16254 110 aaKnown RBP12.12□□□□□ -0.47
Trim28-201ENSMUST00000005705 Ss18Q62280 418 aa12.12□□□□□ -0.47
Trim28-201ENSMUST00000005705 Igkv4-70A0A0B4J1I5 116 aa12.11□□□□□ -0.47
Trim28-201ENSMUST00000005705 Q9D8Q6 235 aa12.11□□□□□ -0.47
Trim28-201ENSMUST00000005705 Gm10295Q8CCF3 114 aa12.11□□□□□ -0.47
Trim28-201ENSMUST00000005705 Ndufs7Q9DC70 224 aa12.11□□□□□ -0.47
Trim28-201ENSMUST00000005705 Gm21748Q3UE70 102 aa12.1□□□□□ -0.47
Trim28-201ENSMUST00000005705 F11rO88792 300 aa12.1□□□□□ -0.47
Trim28-201ENSMUST00000005705 Gm21994F6T2D2 329 aa12.09□□□□□ -0.47
Trim28-201ENSMUST00000005705 Gm11020F6ZGD5 61 aa12.09□□□□□ -0.47
Trim28-201ENSMUST00000005705 Dpm2Q9Z324 84 aa12.09□□□□□ -0.47
Trim28-201ENSMUST00000005705 Kmt2bO08550 2713 aa12.08□□□□□ -0.48
Trim28-201ENSMUST00000005705 Defa16P50714 93 aa12.08□□□□□ -0.48
Trim28-201ENSMUST00000005705 Crip2Q9DCT8 208 aaKnown RBP12.08□□□□□ -0.48
Trim28-201ENSMUST00000005705 Lect2O88803 151 aa12.07□□□□□ -0.48
Trim28-201ENSMUST00000005705 Gm20730A0A075B5J6 119 aa12.07□□□□□ -0.48
Trim28-201ENSMUST00000005705 Gm9925F6T2U3 160 aa12.07□□□□□ -0.48
Trim28-201ENSMUST00000005705 Ube2d1P61080 147 aaKnown RBP12.07□□□□□ -0.48
Trim28-201ENSMUST00000005705 Ovol2Q8CIV7 274 aa12.07□□□□□ -0.48
Trim28-201ENSMUST00000005705 Rpl36-ps4A0A140T8U4 117 aa12.06□□□□□ -0.48
Trim28-201ENSMUST00000005705 Gm7849D3YX03 116 aa12.06□□□□□ -0.48
Trim28-201ENSMUST00000005705 Il1f10Q8R459 152 aa12.06□□□□□ -0.48
Trim28-201ENSMUST00000005705 Q9DAQ5 155 aa12.06□□□□□ -0.48
Trim28-201ENSMUST00000005705 Ighv1-58A0A075B5W9 117 aa12.06□□□□□ -0.48
Trim28-201ENSMUST00000005705 Il19Q8CJ70 176 aa12.06□□□□□ -0.48
Trim28-201ENSMUST00000005705 Notch2O35516 2470 aa12.06□□□□□ -0.48
Trim28-201ENSMUST00000005705 Gm7257D3YX25 99 aa12.05□□□□□ -0.48
Trim28-201ENSMUST00000005705 Pla2g2aP31482 146 aa12.05□□□□□ -0.48
Trim28-201ENSMUST00000005705 Prr9Q8BV84 116 aa12.05□□□□□ -0.48
Trim28-201ENSMUST00000005705 Gm933J3QPC1 141 aa12.05□□□□□ -0.48
Trim28-201ENSMUST00000005705 Socs3O35718 225 aa12.05□□□□□ -0.48
Trim28-201ENSMUST00000005705 Trav7d-3Q5R1I1 112 aa12.05□□□□□ -0.48
Trim28-201ENSMUST00000005705 4930596D02RikQ3V0H9 216 aa12.05□□□□□ -0.48
Trim28-201ENSMUST00000005705 SNORCQ9CXL7 121 aa12.05□□□□□ -0.48
Trim28-201ENSMUST00000005705 Higd1aQ9JLR9 95 aa12.05□□□□□ -0.48
Trim28-201ENSMUST00000005705 Pdzd2E9Q1M1 2796 aa12.05□□□□□ -0.48
Trim28-201ENSMUST00000005705 Ighv2-7A0A075B5Q8 116 aa12.04□□□□□ -0.48
Trim28-201ENSMUST00000005705 Ighv1-12A0A0A6YXJ9 117 aa12.04□□□□□ -0.48
Trim28-201ENSMUST00000005705 Gm17455G3UW87 128 aa12.04□□□□□ -0.48
Trim28-201ENSMUST00000005705 Ankrd39Q9D2X0 183 aa12.04□□□□□ -0.48
Trim28-201ENSMUST00000005705 Ighv1-50A0A075B5W1 117 aa12.04□□□□□ -0.48
Trim28-201ENSMUST00000005705 Trav13d-1A0A075B606 110 aa12.04□□□□□ -0.48
Trim28-201ENSMUST00000005705 Mrpl35Q9CQL6 188 aa12.04□□□□□ -0.48
Trim28-201ENSMUST00000005705 FcorP0DJI6 106 aa12.03□□□□□ -0.48
Trim28-201ENSMUST00000005705 Cyyr1Q8VIH7 165 aa12.03□□□□□ -0.48
Trim28-201ENSMUST00000005705 Iah1Q9DB29 249 aa12.03□□□□□ -0.48
Trim28-201ENSMUST00000005705 Igkv4-91A0A075B5L2 119 aa12.03□□□□□ -0.48
Trim28-201ENSMUST00000005705 Ighv1-64A0A075B5X3 117 aa12.03□□□□□ -0.48
Trim28-201ENSMUST00000005705 Ly86O88188 162 aa12.03□□□□□ -0.48
Trim28-201ENSMUST00000005705 Smrp1Q2MH31 260 aa12.03□□□□□ -0.48
Trim28-201ENSMUST00000005705 Spink12Q9D256 87 aa12.03□□□□□ -0.48
Trim28-201ENSMUST00000005705 Cxcl14Q9WUQ5 99 aa12.03□□□□□ -0.48
Trim28-201ENSMUST00000005705 Gm3250E9Q1M3 230 aa12.02□□□□□ -0.48
Trim28-201ENSMUST00000005705 Gm17732E9Q5I2 61 aa12.02□□□□□ -0.48
Trim28-201ENSMUST00000005705 Dmrt3Q80WT2 476 aa12.02□□□□□ -0.48
Trim28-201ENSMUST00000005705 Ube2e2Q91W82 201 aa12.02□□□□□ -0.48
Trim28-201ENSMUST00000005705 Tenm3Q9WTS6 2715 aa12.02□□□□□ -0.49
Trim28-201ENSMUST00000005705 1810032O08RikE9PZV8 113 aa12.02□□□□□ -0.49
Trim28-201ENSMUST00000005705 D130052B06RikQ3UW13 202 aa12.02□□□□□ -0.49
Trim28-201ENSMUST00000005705 Tac4Q99N14 128 aa12.02□□□□□ -0.49
Trim28-201ENSMUST00000005705 RetnQ99P87 114 aa12.02□□□□□ -0.49
Trim28-201ENSMUST00000005705 Atp5lQ9CPQ8 103 aa12.02□□□□□ -0.49
Trim28-201ENSMUST00000005705 Ankrd17Q99NH0 2603 aaKnown RBP12.02□□□□□ -0.49
Trim28-201ENSMUST00000005705 Ighv8-5A0A0A6YY60 119 aa12.01□□□□□ -0.49
Trim28-201ENSMUST00000005705 Gm10135F6TEE5 83 aa12.01□□□□□ -0.49
Trim28-201ENSMUST00000005705 Spink1P09036 80 aa12.01□□□□□ -0.49
Trim28-201ENSMUST00000005705 Ube2d3P61079 147 aa12.01□□□□□ -0.49
Trim28-201ENSMUST00000005705 Ube2d2P62838 147 aa12.01□□□□□ -0.49
Trim28-201ENSMUST00000005705 Wfdc15aQ8BH89 80 aa12.01□□□□□ -0.49
Retrieved 100 of 22,080 RNA–protein pairs in 58.3 ms