Protein–RNA interactions for Protein: A0A075B606

Trav13d-1, T cell receptor alpha variable 13D-1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-1A0A075B606 Gm25239-201ENSMUST00000174915 86 ntBASIC27.38■■□□□ 1.97
Trav13d-1A0A075B606 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
Trav13d-1A0A075B606 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Trav13d-1A0A075B606 Gm15042-201ENSMUST00000120212 883 ntBASIC23.99■■□□□ 1.43
Trav13d-1A0A075B606 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trav13d-1A0A075B606 Gm24109-201ENSMUST00000175489 103 ntBASIC23.7■■□□□ 1.38
Trav13d-1A0A075B606 Gm15045-201ENSMUST00000117359 883 ntBASIC23.4■■□□□ 1.34
Trav13d-1A0A075B606 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Trav13d-1A0A075B606 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trav13d-1A0A075B606 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Trav13d-1A0A075B606 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Trav13d-1A0A075B606 Gm23366-201ENSMUST00000175022 89 ntBASIC22.91■■□□□ 1.26
Trav13d-1A0A075B606 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
Trav13d-1A0A075B606 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Trav13d-1A0A075B606 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trav13d-1A0A075B606 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Trav13d-1A0A075B606 Psd-208ENSMUST00000224556 2034 ntBASIC22.28■■□□□ 1.16
Trav13d-1A0A075B606 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trav13d-1A0A075B606 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22.2■■□□□ 1.14
Trav13d-1A0A075B606 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Trav13d-1A0A075B606 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
Trav13d-1A0A075B606 AC153911.1-202ENSMUST00000218534 1034 ntBASIC22.09■■□□□ 1.13
Trav13d-1A0A075B606 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trav13d-1A0A075B606 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trav13d-1A0A075B606 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC21.95■■□□□ 1.1
Trav13d-1A0A075B606 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC21.9■■□□□ 1.1
Trav13d-1A0A075B606 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
Trav13d-1A0A075B606 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trav13d-1A0A075B606 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trav13d-1A0A075B606 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trav13d-1A0A075B606 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trav13d-1A0A075B606 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trav13d-1A0A075B606 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21.69■■□□□ 1.06
Trav13d-1A0A075B606 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trav13d-1A0A075B606 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trav13d-1A0A075B606 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC21.62■■□□□ 1.05
Trav13d-1A0A075B606 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trav13d-1A0A075B606 Gm25238-201ENSMUST00000174914 89 ntBASIC21.56■■□□□ 1.04
Trav13d-1A0A075B606 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trav13d-1A0A075B606 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC21.34■■□□□ 1.01
Trav13d-1A0A075B606 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trav13d-1A0A075B606 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav13d-1A0A075B606 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav13d-1A0A075B606 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
Trav13d-1A0A075B606 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trav13d-1A0A075B606 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav13d-1A0A075B606 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC21.11■□□□□ 0.97
Trav13d-1A0A075B606 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trav13d-1A0A075B606 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Trav13d-1A0A075B606 Gm27325-201ENSMUST00000175467 74 ntBASIC20.99■□□□□ 0.95
Trav13d-1A0A075B606 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC20.97■□□□□ 0.95
Trav13d-1A0A075B606 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trav13d-1A0A075B606 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC20.93■□□□□ 0.94
Trav13d-1A0A075B606 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trav13d-1A0A075B606 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trav13d-1A0A075B606 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
Trav13d-1A0A075B606 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC20.87■□□□□ 0.93
Trav13d-1A0A075B606 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trav13d-1A0A075B606 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trav13d-1A0A075B606 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC20.77■□□□□ 0.92
Trav13d-1A0A075B606 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Trav13d-1A0A075B606 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC20.75■□□□□ 0.91
Trav13d-1A0A075B606 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trav13d-1A0A075B606 Gm25262-201ENSMUST00000174934 133 ntBASIC20.7■□□□□ 0.9
Trav13d-1A0A075B606 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trav13d-1A0A075B606 Rab21-202ENSMUST00000218831 843 ntBASIC20.62■□□□□ 0.89
Trav13d-1A0A075B606 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Trav13d-1A0A075B606 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Trav13d-1A0A075B606 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC20.56■□□□□ 0.88
Trav13d-1A0A075B606 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trav13d-1A0A075B606 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.87
Trav13d-1A0A075B606 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trav13d-1A0A075B606 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trav13d-1A0A075B606 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trav13d-1A0A075B606 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Trav13d-1A0A075B606 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trav13d-1A0A075B606 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trav13d-1A0A075B606 Gm10524-201ENSMUST00000181931 1893 ntBASIC20.39■□□□□ 0.85
Trav13d-1A0A075B606 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trav13d-1A0A075B606 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC20.38■□□□□ 0.85
Trav13d-1A0A075B606 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trav13d-1A0A075B606 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC20.34■□□□□ 0.85
Trav13d-1A0A075B606 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trav13d-1A0A075B606 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC20.32■□□□□ 0.84
Trav13d-1A0A075B606 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trav13d-1A0A075B606 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trav13d-1A0A075B606 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Trav13d-1A0A075B606 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav13d-1A0A075B606 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav13d-1A0A075B606 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC20.28■□□□□ 0.84
Trav13d-1A0A075B606 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Trav13d-1A0A075B606 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20.19■□□□□ 0.82
Trav13d-1A0A075B606 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC20.19■□□□□ 0.82
Trav13d-1A0A075B606 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trav13d-1A0A075B606 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav13d-1A0A075B606 Gm26115-201ENSMUST00000175605 87 ntBASIC20.17■□□□□ 0.82
Trav13d-1A0A075B606 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav13d-1A0A075B606 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav13d-1A0A075B606 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC20.13■□□□□ 0.81
Trav13d-1A0A075B606 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms