Protein–RNA interactions for Protein: Q5R1I1

Trav7d-3, T cell receptor alpha variable 7-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav7d-3Q5R1I1 Gm25239-201ENSMUST00000174915 86 ntBASIC25.78■■□□□ 1.72
Trav7d-3Q5R1I1 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Trav7d-3Q5R1I1 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Trav7d-3Q5R1I1 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
Trav7d-3Q5R1I1 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Trav7d-3Q5R1I1 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Trav7d-3Q5R1I1 Gm15042-201ENSMUST00000120212 883 ntBASIC23.08■■□□□ 1.29
Trav7d-3Q5R1I1 Psd-208ENSMUST00000224556 2034 ntBASIC23.05■■□□□ 1.28
Trav7d-3Q5R1I1 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Trav7d-3Q5R1I1 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Trav7d-3Q5R1I1 Gm15045-201ENSMUST00000117359 883 ntBASIC22.61■■□□□ 1.21
Trav7d-3Q5R1I1 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Trav7d-3Q5R1I1 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Trav7d-3Q5R1I1 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22.45■■□□□ 1.18
Trav7d-3Q5R1I1 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Trav7d-3Q5R1I1 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trav7d-3Q5R1I1 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Trav7d-3Q5R1I1 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trav7d-3Q5R1I1 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Trav7d-3Q5R1I1 Gm24109-201ENSMUST00000175489 103 ntBASIC22.06■■□□□ 1.12
Trav7d-3Q5R1I1 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Trav7d-3Q5R1I1 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav7d-3Q5R1I1 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trav7d-3Q5R1I1 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trav7d-3Q5R1I1 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21.83■■□□□ 1.09
Trav7d-3Q5R1I1 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trav7d-3Q5R1I1 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trav7d-3Q5R1I1 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trav7d-3Q5R1I1 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trav7d-3Q5R1I1 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trav7d-3Q5R1I1 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC21.68■■□□□ 1.06
Trav7d-3Q5R1I1 Gm23366-201ENSMUST00000175022 89 ntBASIC21.67■■□□□ 1.06
Trav7d-3Q5R1I1 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Trav7d-3Q5R1I1 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trav7d-3Q5R1I1 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trav7d-3Q5R1I1 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trav7d-3Q5R1I1 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav7d-3Q5R1I1 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav7d-3Q5R1I1 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21.35■■□□□ 1.01
Trav7d-3Q5R1I1 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Trav7d-3Q5R1I1 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav7d-3Q5R1I1 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Trav7d-3Q5R1I1 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21.21■□□□□ 0.99
Trav7d-3Q5R1I1 Gm10524-201ENSMUST00000181931 1893 ntBASIC21.21■□□□□ 0.99
Trav7d-3Q5R1I1 AC153911.1-202ENSMUST00000218534 1034 ntBASIC21.18■□□□□ 0.98
Trav7d-3Q5R1I1 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trav7d-3Q5R1I1 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav7d-3Q5R1I1 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav7d-3Q5R1I1 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
Trav7d-3Q5R1I1 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trav7d-3Q5R1I1 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC21■□□□□ 0.95
Trav7d-3Q5R1I1 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trav7d-3Q5R1I1 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trav7d-3Q5R1I1 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trav7d-3Q5R1I1 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trav7d-3Q5R1I1 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20.68■□□□□ 0.9
Trav7d-3Q5R1I1 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trav7d-3Q5R1I1 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trav7d-3Q5R1I1 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Trav7d-3Q5R1I1 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav7d-3Q5R1I1 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Trav7d-3Q5R1I1 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC20.52■□□□□ 0.88
Trav7d-3Q5R1I1 Gm42596-201ENSMUST00000196305 1958 ntBASIC20.51■□□□□ 0.87
Trav7d-3Q5R1I1 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
Trav7d-3Q5R1I1 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trav7d-3Q5R1I1 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trav7d-3Q5R1I1 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Trav7d-3Q5R1I1 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trav7d-3Q5R1I1 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC20.39■□□□□ 0.85
Trav7d-3Q5R1I1 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trav7d-3Q5R1I1 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trav7d-3Q5R1I1 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trav7d-3Q5R1I1 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC20.34■□□□□ 0.85
Trav7d-3Q5R1I1 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Trav7d-3Q5R1I1 Gm27325-201ENSMUST00000175467 74 ntBASIC20.32■□□□□ 0.84
Trav7d-3Q5R1I1 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav7d-3Q5R1I1 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trav7d-3Q5R1I1 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trav7d-3Q5R1I1 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trav7d-3Q5R1I1 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trav7d-3Q5R1I1 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav7d-3Q5R1I1 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav7d-3Q5R1I1 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Trav7d-3Q5R1I1 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav7d-3Q5R1I1 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav7d-3Q5R1I1 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC20.18■□□□□ 0.82
Trav7d-3Q5R1I1 Gm25238-201ENSMUST00000174914 89 ntBASIC20.15■□□□□ 0.82
Trav7d-3Q5R1I1 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
Trav7d-3Q5R1I1 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav7d-3Q5R1I1 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav7d-3Q5R1I1 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav7d-3Q5R1I1 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav7d-3Q5R1I1 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav7d-3Q5R1I1 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC20.09■□□□□ 0.81
Trav7d-3Q5R1I1 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trav7d-3Q5R1I1 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trav7d-3Q5R1I1 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav7d-3Q5R1I1 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trav7d-3Q5R1I1 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Trav7d-3Q5R1I1 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms