RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W EMI2Q04409 500 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W YMR226CQ05016 267 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W DBP9Q06218 594 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W MLC2Q06580 163 aa3.34□□□□□ -1.87
USE1YGL098W TMA46Q12000 345 aaKnown RBP3.34□□□□□ -1.87
USE1YGL098W AIM41Q12032 185 aa3.34□□□□□ -1.87
USE1YGL098W YDL109CQ12103 647 aa3.34□□□□□ -1.87
USE1YGL098W APM4Q99186 491 aa3.34□□□□□ -1.87
USE1YGL098W VCX1Q99385 411 aa3.34□□□□□ -1.87
USE1YGL098W YLR278CQ05854 1341 aa3.34□□□□□ -1.87
USE1YGL098W TY1B-BRQ12193 1756 aa3.33□□□□□ -1.88
USE1YGL098W TY1B-GR3Q12316 1755 aa3.33□□□□□ -1.88
USE1YGL098W TY1B-ORQ92393 1755 aa3.33□□□□□ -1.88
USE1YGL098W ATP6P00854 259 aa3.33□□□□□ -1.88
USE1YGL098W CHO2P05374 869 aaKnown RBP3.33□□□□□ -1.88
USE1YGL098W KSS1P14681 368 aa3.33□□□□□ -1.88
USE1YGL098W MER1P16523 270 aa3.33□□□□□ -1.88
USE1YGL098W CKA2P19454 339 aa3.33□□□□□ -1.88
USE1YGL098W EXO70P19658 623 aa3.33□□□□□ -1.88
USE1YGL098W ATP12P22135 325 aa3.33□□□□□ -1.88
USE1YGL098W PRP22P24384 1145 aaKnown RBP3.33□□□□□ -1.88
USE1YGL098W PUP1P25043 261 aa3.33□□□□□ -1.88
USE1YGL098W ICL1P28240 557 aaPredicted RBP3.33□□□□□ -1.88
USE1YGL098W MLS1P30952 554 aa3.33□□□□□ -1.88
USE1YGL098W EUG1P32474 517 aa3.33□□□□□ -1.88
USE1YGL098W SSE2P32590 693 aaKnown RBP3.33□□□□□ -1.88
USE1YGL098W YBL010CP32788 280 aa3.33□□□□□ -1.88
USE1YGL098W MRS6P32864 603 aaKnown RBP3.33□□□□□ -1.88
USE1YGL098W TFC4P33339 1025 aa3.33□□□□□ -1.88
USE1YGL098W NIC96P34077 839 aa3.33□□□□□ -1.88
USE1YGL098W MYO3P36006 1272 aa3.33□□□□□ -1.88
USE1YGL098W MRPL17P36528 281 aa3.33□□□□□ -1.88
USE1YGL098W PPS1P38148 807 aa3.33□□□□□ -1.88
USE1YGL098W ECM2P38241 364 aaKnown RBP3.33□□□□□ -1.88
USE1YGL098W UBX7P38349 436 aa3.33□□□□□ -1.88
USE1YGL098W MSC7P38694 644 aa3.33□□□□□ -1.88
USE1YGL098W YHL008CP38750 627 aa3.33□□□□□ -1.88
USE1YGL098W ATG7P38862 630 aa3.33□□□□□ -1.88
USE1YGL098W SPC97P38863 823 aa3.33□□□□□ -1.88
USE1YGL098W FRT2P39734 528 aa3.33□□□□□ -1.88
USE1YGL098W ZRG8P40021 1076 aa3.33□□□□□ -1.88
USE1YGL098W DDI1P40087 428 aa3.33□□□□□ -1.88
USE1YGL098W PSF2P40359 213 aa3.33□□□□□ -1.88
USE1YGL098W PCI8P40512 444 aa3.33□□□□□ -1.88
USE1YGL098W FMP32P43557 207 aa3.33□□□□□ -1.88
USE1YGL098W AIP1P46680 615 aaKnown RBP3.33□□□□□ -1.88
USE1YGL098W ATG36P46983 293 aa3.33□□□□□ -1.88
USE1YGL098W PSP2P50109 593 aaKnown RBP3.33□□□□□ -1.88
USE1YGL098W MAL11P53048 616 aa3.33□□□□□ -1.88
USE1YGL098W MND1P53102 219 aa3.33□□□□□ -1.88
USE1YGL098W USE1P53146 245 aa3.33□□□□□ -1.88
USE1YGL098W YGR111WP53265 400 aa3.33□□□□□ -1.88
USE1YGL098W ZRG17P53735 605 aa3.33□□□□□ -1.88
USE1YGL098W YNL165WP53891 406 aa3.33□□□□□ -1.88
USE1YGL098W YNL058CP53947 316 aa3.33□□□□□ -1.88
USE1YGL098W EGD1Q02642 157 aaKnown RBP3.33□□□□□ -1.88
USE1YGL098W FDC1Q03034 503 aa3.33□□□□□ -1.88
USE1YGL098W NSE5Q03718 556 aa3.33□□□□□ -1.88
USE1YGL098W SMD2Q06217 110 aaKnown RBP3.33□□□□□ -1.88
USE1YGL098W TOS4Q06266 489 aa3.33□□□□□ -1.88
USE1YGL098W YPR196WQ06595 470 aa3.33□□□□□ -1.88
USE1YGL098W DTD1Q07648 150 aaKnown RBP3.33□□□□□ -1.88
USE1YGL098W BRX1Q08235 291 aaKnown RBP3.33□□□□□ -1.88
USE1YGL098W HUA2Q12134 243 aa3.33□□□□□ -1.88
USE1YGL098W SSF2Q12153 453 aaPredicted RBP3.33□□□□□ -1.88
USE1YGL098W GET3Q12154 354 aaKnown RBP3.33□□□□□ -1.88
USE1YGL098W HER1Q12276 1246 aa3.33□□□□□ -1.88
USE1YGL098W RTR2Q12378 196 aa3.33□□□□□ -1.88
USE1YGL098W ENT1Q12518 454 aa3.33□□□□□ -1.88
USE1YGL098W ADF1Q2V2Q1 113 aa3.33□□□□□ -1.88
USE1YGL098W RPN13O13563 156 aa3.32□□□□□ -1.88
USE1YGL098W TUB3P09734 445 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W YGL041W-AP0C5N3 154 aa3.32□□□□□ -1.88
USE1YGL098W GPA2P10823 449 aa3.32□□□□□ -1.88
USE1YGL098W HMG2P12684 1045 aa3.32□□□□□ -1.88
USE1YGL098W MRP13P12686 339 aa3.32□□□□□ -1.88
USE1YGL098W CLN3P13365 580 aa3.32□□□□□ -1.88
USE1YGL098W PMS1P14242 873 aa3.32□□□□□ -1.88
USE1YGL098W SEC18P18759 758 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W RPA135P22138 1203 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W URE2P23202 354 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W CMK1P27466 446 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W IRE1P32361 1115 aa3.32□□□□□ -1.88
USE1YGL098W HIR1P32479 840 aa3.32□□□□□ -1.88
USE1YGL098W TFB1P32776 642 aa3.32□□□□□ -1.88
USE1YGL098W RPC25P35718 212 aa3.32□□□□□ -1.88
USE1YGL098W TEF4P36008 412 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W CUE2P36075 443 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W ANR2P36090 516 aaPredicted RBP3.32□□□□□ -1.88
USE1YGL098W NUP133P36161 1157 aa3.32□□□□□ -1.88
USE1YGL098W KAP104P38217 918 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W YBR032WP38223 100 aa3.32□□□□□ -1.88
USE1YGL098W PFF1P38244 976 aa3.32□□□□□ -1.88
USE1YGL098W SDH8P38345 138 aa3.32□□□□□ -1.88
USE1YGL098W DIA4P38705 446 aaPredicted RBP3.32□□□□□ -1.88
USE1YGL098W GOS1P38736 223 aa3.32□□□□□ -1.88
USE1YGL098W OTU2P38747 307 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W UTP9P38882 575 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W SET5P38890 526 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W SEC31P38968 1273 aaKnown RBP3.32□□□□□ -1.88
Retrieved 100 of 5,963 RNA–protein pairs in 10.8 ms