RNA–Protein interactions for RNA: YFL002C

SPB4, Transcript of Putative ATP-dependent RNA helicase, yeast

Gene SPB4, Length 1,821 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPB4	YFL002C	FEN2	P25621	512 aa	Known RBP	4.39	□□□□□ -1.71
SPB4	YFL002C	GCD7	P32502	381 aa	Predicted RBP	4.39	□□□□□ -1.71
SPB4	YFL002C	YBL029W	P38201	376 aa		4.39	□□□□□ -1.71
SPB4	YFL002C	MEF2	P39677	819 aa		4.39	□□□□□ -1.71
SPB4	YFL002C	FLC2	P39719	783 aa		4.39	□□□□□ -1.71
SPB4	YFL002C	YIL077C	P40508	320 aa		4.39	□□□□□ -1.71
SPB4	YFL002C	BAP3	P41815	604 aa		4.39	□□□□□ -1.71
SPB4	YFL002C	MRX6	P48564	524 aa		4.39	□□□□□ -1.71
SPB4	YFL002C	SSL2	Q00578	843 aa		4.39	□□□□□ -1.71
SPB4	YFL002C	REG1	Q00816	1014 aa		4.39	□□□□□ -1.71
SPB4	YFL002C	ARP9	Q05123	467 aa		4.39	□□□□□ -1.71
SPB4	YFL002C	RXT3	Q07458	294 aa		4.39	□□□□□ -1.71
SPB4	YFL002C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.38	□□□□□ -1.71	not detected
SPB4	YFL002C	PRE8	P23639	250 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	ERG8	P24521	451 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	LCB1	P25045	558 aa	Known RBP	4.38	□□□□□ -1.71
SPB4	YFL002C	YCR015C	P25616	317 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	BCS1	P32839	456 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	TDP1	P38319	544 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	NUP60	P39705	539 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	TMN3	P40071	706 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	ASE1	P50275	885 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	RAD30	Q04049	632 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	MCA1	Q08601	432 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	TMA16	Q08687	178 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	CIR2	Q08822	631 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	NUS1	Q12063	375 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	YDL177C	Q12257	170 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	RTN2	Q12443	393 aa		4.38	□□□□□ -1.71
SPB4	YFL002C	NOP58	Q12499	511 aa	Known RBP	4.38	□□□□□ -1.71
SPB4	YFL002C	OCA4	P25366	362 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	KAR4	P25583	335 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	ARB1	P40024	610 aa	Known RBP	4.37	□□□□□ -1.71
SPB4	YFL002C	UBP7	P40453	1071 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	SKP2	P42843	763 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	IDS2	P46958	469 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	AAD10	P47182	288 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	DSD1	P53095	428 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	TAM41	P53230	385 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	YDR131C	Q03899	556 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	RCN2	Q12044	265 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	VCX1	Q99385	411 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	LAT1	P12695	482 aa	Known RBP	4.37	□□□□□ -1.71
SPB4	YFL002C	PRP28	P23394	588 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	DSS4	P32601	143 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	CAJ1	P39101	391 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	JEM1	P40358	645 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	FKH2	P41813	862 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	AMA1	P50082	593 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	YGR016W	P53209	190 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	ERG5	P54781	538 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	ZDS2	P54786	942 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	NGL3	Q03210	505 aa		4.37	□□□□□ -1.71
SPB4	YFL002C	ERG27	Q12452	347 aa	Known RBP	4.37	□□□□□ -1.71
SPB4	YFL002C	SOD2	P00447	233 aa		4.36	□□□□□ -1.71
SPB4	YFL002C	VPS34	P22543	875 aa		4.36	□□□□□ -1.71
SPB4	YFL002C	PEP3	P27801	918 aa		4.36	□□□□□ -1.71
SPB4	YFL002C	ANP1	P32629	500 aa		4.36	□□□□□ -1.71
SPB4	YFL002C	FMO1	P38866	432 aa		4.36	□□□□□ -1.71
SPB4	YFL002C	PLB1	P39105	664 aa		4.36	□□□□□ -1.71
SPB4	YFL002C	PIG2	P40187	538 aa		4.36	□□□□□ -1.71
SPB4	YFL002C	DJP1	P40564	432 aa		4.36	□□□□□ -1.71
SPB4	YFL002C	YIR042C	P40586	236 aa		4.36	□□□□□ -1.71
SPB4	YFL002C	RFX1	P48743	811 aa		4.36	□□□□□ -1.71
SPB4	YFL002C	YGR054W	P53235	642 aa	Known RBP	4.36	□□□□□ -1.71
SPB4	YFL002C	MUB1	Q03162	620 aa		4.36	□□□□□ -1.71
SPB4	YFL002C	YAP6	Q03935	383 aa		4.36	□□□□□ -1.71
SPB4	YFL002C	HOF1	Q05080	669 aa		4.36	□□□□□ -1.71
SPB4	YFL002C	RGC1	Q06108	1083 aa	Known RBP	4.36	□□□□□ -1.71
SPB4	YFL002C	ACK1	Q07622	623 aa	Predicted RBP	4.36	□□□□□ -1.71
SPB4	YFL002C	ILS1	P09436	1072 aa	Known RBP	4.35	□□□□□ -1.71
SPB4	YFL002C	NAT1	P12945	854 aa	Known RBP	4.35	□□□□□ -1.71
SPB4	YFL002C	CDC20	P26309	610 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	MSS1	P32559	526 aa	Predicted RBP	4.35	□□□□□ -1.71
SPB4	YFL002C	ALY1	P36117	915 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	GEX2	P36173	615 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.35	□□□□□ -1.71	not detected
SPB4	YFL002C	SLZ1	P40167	298 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	YJL068C	P40363	299 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	PIL1	P53252	339 aa	Known RBP	4.35	□□□□□ -1.71
SPB4	YFL002C	VPS9	P54787	451 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	MTG1	Q03151	367 aa	Predicted RBP	4.35	□□□□□ -1.71
SPB4	YFL002C	GCN5	Q03330	439 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	IRC3	Q06683	689 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	PSK2	Q08217	1101 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	PNO1	Q99216	274 aa	Known RBP	4.35	□□□□□ -1.71
SPB4	YFL002C	TRP3	P00937	484 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	CBS1	P14066	229 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	CAD1	P24813	409 aa	Known RBP	4.35	□□□□□ -1.71
SPB4	YFL002C	YCR061W	P25639	631 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	URK1	P27515	501 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	ORC2	P32833	620 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	BUD16	P39988	312 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	PFK26	P40433	827 aa	Known RBP	4.35	□□□□□ -1.71
SPB4	YFL002C	YIL161W	P40449	235 aa	Known RBP	4.35	□□□□□ -1.71
SPB4	YFL002C	INN1	P53901	409 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	NGL2	Q03264	515 aa	Known RBP	4.35	□□□□□ -1.71
SPB4	YFL002C	YLR224W	Q05947	369 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	PSR1	Q07800	427 aa		4.35	□□□□□ -1.71
SPB4	YFL002C	CHS5	Q12114	671 aa	Known RBP	4.35	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 19.3 ms