RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeast

Gene RUB1, Length 234 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUB1	YDR139C	MOT3	P54785	490 aa	Known RBP	4.16	□□□□□ -1.74
RUB1	YDR139C	IRC3	Q06683	689 aa		4.16	□□□□□ -1.74
RUB1	YDR139C	MIS1	P09440	975 aa	Known RBP	4.15	□□□□□ -1.75
RUB1	YDR139C	POL3	P15436	1097 aa		4.15	□□□□□ -1.75
RUB1	YDR139C	PHO81	P17442	1178 aa		4.15	□□□□□ -1.75
RUB1	YDR139C	AMD2	P22580	549 aa		4.15	□□□□□ -1.75
RUB1	YDR139C	GSY2	P27472	705 aa		4.15	□□□□□ -1.75
RUB1	YDR139C	ARO9	P38840	513 aa	Predicted RBP	4.15	□□□□□ -1.75
RUB1	YDR139C	UBX4	P54730	416 aa		4.15	□□□□□ -1.75
RUB1	YDR139C	YPL108W	Q02872	168 aa	Predicted RBP	4.15	□□□□□ -1.75
RUB1	YDR139C	YML119W	Q03208	357 aa		4.15	□□□□□ -1.75
RUB1	YDR139C	ARA2	Q04212	335 aa		4.15	□□□□□ -1.75
RUB1	YDR139C	SEG1	Q04279	960 aa		4.15	□□□□□ -1.75
RUB1	YDR139C	ORM2	Q06144	216 aa		4.15	□□□□□ -1.75
RUB1	YDR139C	IWR1	Q07532	353 aa	Predicted RBP	4.15	□□□□□ -1.75
RUB1	YDR139C	PGK1	P00560	416 aa	Known RBP	4.14	□□□□□ -1.75
RUB1	YDR139C	KGD2	P19262	463 aa	Predicted RBP	4.14	□□□□□ -1.75
RUB1	YDR139C	PDE1	P22434	369 aa		4.14	□□□□□ -1.75
RUB1	YDR139C	RIT1	P23796	513 aa		4.14	□□□□□ -1.75
RUB1	YDR139C	MCM3	P24279	971 aa	Known RBP	4.14	□□□□□ -1.75
RUB1	YDR139C	YJU2	P28320	278 aa	Predicted RBP	4.14	□□□□□ -1.75
RUB1	YDR139C	CPR6	P53691	371 aa	Known RBP	4.14	□□□□□ -1.75
RUB1	YDR139C	AAT1	Q01802	451 aa		4.14	□□□□□ -1.75
RUB1	YDR139C	UBP16	Q02863	499 aa		4.14	□□□□□ -1.75
RUB1	YDR139C	RIM13	Q03792	727 aa		4.14	□□□□□ -1.75
RUB1	YDR139C	RAD33	Q04231	177 aa		4.14	□□□□□ -1.75
RUB1	YDR139C	NUP1	P20676	1076 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	MBR1	P23493	339 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	SWC3	P31376	625 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	SPC72	P39723	622 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	TPM2	P40414	161 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	CIR1	P42940	261 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	ATP23	P53722	227 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	YNL058C	P53947	316 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	ATG21	Q02887	496 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	YML053C	Q04978	212 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	HRD3	Q05787	833 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	CYK3	Q07533	885 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	YDL242W	Q07746	117 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	ICL2	Q12031	575 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	LCB4	Q12246	624 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	YBR255C-A	Q3E776	120 aa		4.13	□□□□□ -1.75
RUB1	YDR139C	BI2	P03873	423 aa		4.12	□□□□□ -1.75
RUB1	YDR139C	ADE3	P07245	946 aa	Known RBP	4.12	□□□□□ -1.75
RUB1	YDR139C	SEC18	P18759	758 aa	Known RBP	4.12	□□□□□ -1.75
RUB1	YDR139C	APN1	P22936	367 aa		4.12	□□□□□ -1.75
RUB1	YDR139C	SWI4	P25302	1093 aa	Known RBP	4.12	□□□□□ -1.75
RUB1	YDR139C	SIP1	P32578	815 aa		4.12	□□□□□ -1.75
RUB1	YDR139C	VPS8	P39702	1274 aa		4.12	□□□□□ -1.75
RUB1	YDR139C	FAF1	P40546	346 aa	Predicted RBP	4.12	□□□□□ -1.75
RUB1	YDR139C	SAE2	P46946	345 aa		4.12	□□□□□ -1.75
RUB1	YDR139C	IMA1	P53051	589 aa		4.12	□□□□□ -1.75
RUB1	YDR139C	PLM2	Q04383	521 aa		4.12	□□□□□ -1.75
RUB1	YDR139C	SPN1	Q06505	410 aa	Predicted RBP	4.12	□□□□□ -1.75
RUB1	YDR139C	BSP1	Q06604	576 aa		4.12	□□□□□ -1.75
RUB1	YDR139C	RDL1	Q12305	139 aa	Known RBP	4.12	□□□□□ -1.75
RUB1	YDR139C	Q0010	Q9ZZX9	128 aa		4.12	□□□□□ -1.75
RUB1	YDR139C	PGI1	P12709	554 aa	Known RBP	4.11	□□□□□ -1.75
RUB1	YDR139C	RRP43	P25359	394 aa	Predicted RBP	4.11	□□□□□ -1.75
RUB1	YDR139C	RPF2	P36160	344 aa	Known RBP	4.11	□□□□□ -1.75
RUB1	YDR139C	SAP1	P39955	897 aa	Known RBP	4.11	□□□□□ -1.75
RUB1	YDR139C	ACA1	P39970	489 aa		4.11	□□□□□ -1.75
RUB1	YDR139C	PET122	P10355	254 aa		4.1	□□□□□ -1.75
RUB1	YDR139C	BIK1	P11709	440 aa		4.1	□□□□□ -1.75
RUB1	YDR139C	LTP1	P40347	161 aa		4.1	□□□□□ -1.75
RUB1	YDR139C	BST1	P43571	1029 aa		4.1	□□□□□ -1.75
RUB1	YDR139C	BPL1	P48445	690 aa	Predicted RBP	4.1	□□□□□ -1.75
RUB1	YDR139C	YPL191C	Q08930	360 aa		4.1	□□□□□ -1.75
RUB1	YDR139C	PNO1	Q99216	274 aa	Known RBP	4.1	□□□□□ -1.75
RUB1	YDR139C	MDM10	P18409	493 aa		4.09	□□□□□ -1.75
RUB1	YDR139C	MSM1	P22438	575 aa		4.09	□□□□□ -1.75
RUB1	YDR139C	ARP2	P32381	391 aa	Known RBP	4.09	□□□□□ -1.75
RUB1	YDR139C	GCD7	P32502	381 aa	Predicted RBP	4.09	□□□□□ -1.75
RUB1	YDR139C	BEM3	P32873	1128 aa		4.09	□□□□□ -1.75
RUB1	YDR139C	KES1	P35844	434 aa	Known RBP	4.09	□□□□□ -1.75
RUB1	YDR139C	VBA2	P38358	474 aa	Known RBP	4.09	□□□□□ -1.75
RUB1	YDR139C	ERC1	P38767	581 aa		4.09	□□□□□ -1.75
RUB1	YDR139C	FSH1	P38777	243 aa	Known RBP	4.09	□□□□□ -1.75
RUB1	YDR139C	PUG1	P40100	303 aa		4.09	□□□□□ -1.75
RUB1	YDR139C	SKP2	P42843	763 aa		4.09	□□□□□ -1.75
RUB1	YDR139C	YPL071C	Q02864	156 aa		4.09	□□□□□ -1.75
RUB1	YDR139C	SES1	P07284	462 aa	Known RBP	4.08	□□□□□ -1.76
RUB1	YDR139C	CLB4	P24871	460 aa		4.08	□□□□□ -1.76
RUB1	YDR139C	PTH2	P34222	208 aa		4.08	□□□□□ -1.76
RUB1	YDR139C	FUN12	P39730	1002 aa	Known RBP	4.08	□□□□□ -1.76
RUB1	YDR139C	XBP1	P40489	647 aa		4.08	□□□□□ -1.76
RUB1	YDR139C	ULP2	P40537	1034 aa	Predicted RBP	4.08	□□□□□ -1.76
RUB1	YDR139C	NMD5	P46970	1048 aa		4.08	□□□□□ -1.76
RUB1	YDR139C	BNA3	P47039	444 aa	Known RBP	4.08	□□□□□ -1.76
RUB1	YDR139C	TRS130	Q03660	1102 aa		4.08	□□□□□ -1.76
RUB1	YDR139C	GTB1	Q04924	702 aa		4.08	□□□□□ -1.76
RUB1	YDR139C	TPO3	Q06451	622 aa		4.08	□□□□□ -1.76
RUB1	YDR139C	SUL2	Q12325	893 aa		4.08	□□□□□ -1.76
RUB1	YDR139C	FRE7	Q12333	620 aa		4.08	□□□□□ -1.76
RUB1	YDR139C	RVB2	Q12464	471 aa	Known RBP	4.08	□□□□□ -1.76
RUB1	YDR139C	YLR111W	Q12528	110 aa		4.08	□□□□□ -1.76
RUB1	YDR139C	RTC1	Q08281	1341 aa		4.07	□□□□□ -1.76
RUB1	YDR139C	APA1	P16550	321 aa	Known RBP	4.07	□□□□□ -1.76
RUB1	YDR139C	URE2	P23202	354 aa	Known RBP	4.07	□□□□□ -1.76
RUB1	YDR139C	PTP1	P25044	335 aa		4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms