RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ATXN10Q9UBB4 475 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 SYNPO2Q9UMS6 1093 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 SATB2Q9UPW6 733 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 PCDHGC5Q9Y5F6 944 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 CYP11B2P19099 503 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 ZBED6P86452 979 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 DMPKQ09013 629 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 PROSER2Q86WR7 435 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-216ENST00000637968 RAB11FIP4Q86YS3 637 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 FUKQ8N0W3 1084 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 CLASRPQ8N2M8 674 aaKnown RBP6.41□□□□□ -1.38
SCN1A-216ENST00000637968 ZFAND2BQ8WV99 257 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 ATP6V0A1Q93050 837 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 GDAP1L1Q96MZ0 367 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 NSRP1Q9H0G5 558 aaKnown RBP6.41□□□□□ -1.38
SCN1A-216ENST00000637968 NLRP2Q9NX02 1062 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 ANKIB1Q9P2G1 1089 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 THRAP3Q9Y2W1 955 aaKnown RBP6.41□□□□□ -1.38
SCN1A-216ENST00000637968 hCG_2014768A0A024R1R8 64 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-216ENST00000637968 N4BP3O15049 544 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 RCN1Q15293 331 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 ANKRD24Q8TF21 1146 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 MTA3Q9BTC8 594 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.41□□□□□ -1.38
SCN1A-216ENST00000637968 RABL2AQ9UBK7 228 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-216ENST00000637968 EVI5O60447 810 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 ZNF202O95125 648 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 USP5P45974 858 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 EVA1CP58658 441 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 CBX3Q13185 183 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 MTHFD1LQ6UB35 978 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 MYOCDQ8IZQ8 938 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 SSH1Q8WYL5 1049 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 STAMBPL1Q96FJ0 436 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 RPGRIP1Q96KN7 1286 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 SH3GL1Q99961 368 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 FBXO9Q9UK97 447 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-216ENST00000637968 C2CD2Q9Y426 696 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 CYP46A1Q9Y6A2 500 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 TROQ12816 1431 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-216ENST00000637968 EFCAB5A4FU69 1503 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 P4HA2O15460 535 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 SUPT3HO75486 399 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 MLH1P40692 756 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 ARPC4P59998 168 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 VSNL1P62760 191 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 IFI16Q16666 785 aaKnown RBP6.4□□□□□ -1.38
SCN1A-216ENST00000637968 CCDC129Q6ZRS4 1044 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 ZNF473Q8WTR7 871 aaKnown RBP6.4□□□□□ -1.38
SCN1A-216ENST00000637968 TBC1D5Q92609 795 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 POLR3CQ9BUI4 534 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-216ENST00000637968 MOV10L1Q9BXT6 1211 aaKnown RBP6.4□□□□□ -1.38
SCN1A-216ENST00000637968 EPN3Q9H201 632 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 SAMD15Q9P1V8 674 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 PLB1Q6P1J6 1458 aa6.4□□□□□ -1.38
SCN1A-216ENST00000637968 CFAP73A6NFT4 308 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 SMNDC1O75940 238 aaKnown RBP eCLIP6.4□□□□□ -1.39
SCN1A-216ENST00000637968 LMOD1P29536 600 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-216ENST00000637968 APBA1Q02410 837 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 MUM1Q2TAK8 710 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 SFMBT2Q5VUG0 894 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 NUGGCQ68CJ6 796 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 PLEKHM2Q8IWE5 1019 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 ZNF280CQ8ND82 737 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 SMC1BQ8NDV3 1235 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 RUFY2Q8WXA3 655 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 MIS18AQ9NYP9 233 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 TMCO1Q9UM00 188 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 CEP131Q9UPN4 1083 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 ZNF148Q9UQR1 794 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 ZNF711Q9Y462 761 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 ERBB3P21860 1342 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 TARSL2A2RTX5 802 aaKnown RBP6.4□□□□□ -1.39
SCN1A-216ENST00000637968 PER1O15534 1290 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-216ENST00000637968 EIF4BP23588 611 aaKnown RBP6.4□□□□□ -1.39
SCN1A-216ENST00000637968 FANCCQ00597 558 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 FOXD4Q12950 439 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-216ENST00000637968 KRT72Q14CN4 511 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 BICDL1Q6ZP65 573 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 APBB1IPQ7Z5R6 666 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-216ENST00000637968 NLRP14Q86W24 1093 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 MAP7D3Q8IWC1 876 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 SAMD3Q8N6K7 520 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 PPFIBP2Q8ND30 876 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.4□□□□□ -1.39
SCN1A-216ENST00000637968 COG1Q8WTW3 980 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 HVCN1Q96D96 273 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 ANKRD27Q96NW4 1050 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 FTOQ9C0B1 505 aaKnown RBP eCLIP6.4□□□□□ -1.39
SCN1A-216ENST00000637968 MIS12Q9H081 205 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 ZWILCHQ9H900 591 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 FAM114A2Q9NRY5 505 aa6.4□□□□□ -1.39
SCN1A-216ENST00000637968 TMEM232C9JQI7 657 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 ATP6V1G2O95670 118 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 ALOX15P16050 662 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-216ENST00000637968 CCND1P24385 295 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 FLT3P36888 993 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 KLC1Q07866 573 aa6.39□□□□□ -1.39
SCN1A-216ENST00000637968 TMCO5AQ8N6Q1 288 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms