RNA–Protein interactions for RNA: ENST00000568301.1

COMMD4-223, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 666 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-223ENST00000568301 ARID4AP29374 1257 aaPredicted RBP18.55■□□□□ 0.56
COMMD4-223ENST00000568301 G3BP1Q13283 466 aaKnown RBP eCLIP18.55■□□□□ 0.562e-6■□□□□ 9.5
COMMD4-223ENST00000568301 CCDC84Q86UT8 332 aaPredicted RBP18.55■□□□□ 0.56
COMMD4-223ENST00000568301 NSUN4Q96CB9 384 aaKnown RBP18.55■□□□□ 0.56
COMMD4-223ENST00000568301 TRIM75PA6NK02 468 aa18.54■□□□□ 0.56
COMMD4-223ENST00000568301 TNPO2O14787 897 aaKnown RBP18.54■□□□□ 0.56
COMMD4-223ENST00000568301 IRF5Q13568 498 aa18.54■□□□□ 0.56
COMMD4-223ENST00000568301 TBC1D9Q6ZT07 1266 aa18.54■□□□□ 0.56
COMMD4-223ENST00000568301 PXYLP1Q8TE99 480 aa18.54■□□□□ 0.56
COMMD4-223ENST00000568301 DEFB118Q96PH6 123 aa18.54■□□□□ 0.56
COMMD4-223ENST00000568301 OSBPL5Q9H0X9 879 aaPredicted RBP18.54■□□□□ 0.56
COMMD4-223ENST00000568301 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.54■□□□□ 0.56
COMMD4-223ENST00000568301 COL2A1P02458 1487 aaPredicted RBP18.53■□□□□ 0.56
COMMD4-223ENST00000568301 PNMA6EA0A0J9YXQ4 647 aa18.53■□□□□ 0.56
COMMD4-223ENST00000568301 EVI5O60447 810 aa18.53■□□□□ 0.56
COMMD4-223ENST00000568301 UQCRFS1P1P0C7P4 283 aa18.53■□□□□ 0.56
COMMD4-223ENST00000568301 PI16Q6UXB8 463 aa18.53■□□□□ 0.56
COMMD4-223ENST00000568301 ANKRD13CQ8N6S4 541 aa18.53■□□□□ 0.56
COMMD4-223ENST00000568301 SMCR8Q8TEV9 937 aaPredicted RBP18.53■□□□□ 0.56
COMMD4-223ENST00000568301 RAI14Q9P0K7 980 aa18.53■□□□□ 0.56
COMMD4-223ENST00000568301 TAOK2Q9UL54 1235 aa18.53■□□□□ 0.56
COMMD4-223ENST00000568301 AGTPBP1Q9UPW5 1226 aa18.53■□□□□ 0.56
COMMD4-223ENST00000568301 BCAR3O75815 825 aa18.52■□□□□ 0.56
COMMD4-223ENST00000568301 TREML2Q5T2D2 321 aa18.52■□□□□ 0.56
COMMD4-223ENST00000568301 FRAT1Q92837 279 aaPredicted RBP18.52■□□□□ 0.56
COMMD4-223ENST00000568301 TBC1D2Q9BYX2 928 aa18.52■□□□□ 0.56
COMMD4-223ENST00000568301 PAK6Q9NQU5 681 aaPredicted RBP18.52■□□□□ 0.56
COMMD4-223ENST00000568301 CAPN2P17655 700 aa18.51■□□□□ 0.55
COMMD4-223ENST00000568301 MCAMP43121 646 aa18.51■□□□□ 0.55
COMMD4-223ENST00000568301 PROCA1Q8NCQ7 364 aaPredicted RBP18.51■□□□□ 0.55
COMMD4-223ENST00000568301 CRISPLD2Q9H0B8 497 aa18.51■□□□□ 0.55
COMMD4-223ENST00000568301 GPR108Q9NPR9 543 aa18.51■□□□□ 0.55
COMMD4-223ENST00000568301 LRP2BPQ9P2M1 347 aa18.51■□□□□ 0.55
COMMD4-223ENST00000568301 STAP2Q9UGK3 403 aa18.51■□□□□ 0.55
COMMD4-223ENST00000568301 PNMA3Q9UL41 463 aa18.51■□□□□ 0.55
COMMD4-223ENST00000568301 ALPK3Q96L96 1907 aa18.51■□□□□ 0.55
COMMD4-223ENST00000568301 FAM196BA6NMK8 535 aa18.5■□□□□ 0.55
COMMD4-223ENST00000568301 SOX1O00570 391 aaPredicted RBP18.5■□□□□ 0.55
COMMD4-223ENST00000568301 CAP2P40123 477 aa18.5■□□□□ 0.55
COMMD4-223ENST00000568301 SPP2Q13103 211 aa18.5■□□□□ 0.55
COMMD4-223ENST00000568301 ZNF280CQ8ND82 737 aa18.5■□□□□ 0.55
COMMD4-223ENST00000568301 CLUAP1Q96AJ1 413 aa18.5■□□□□ 0.55
COMMD4-223ENST00000568301 COA7Q96BR5 231 aa18.5■□□□□ 0.55
COMMD4-223ENST00000568301 PAWRQ96IZ0 340 aaKnown RBP18.5■□□□□ 0.55
COMMD4-223ENST00000568301 HERC5Q9UII4 1024 aaKnown RBP18.5■□□□□ 0.55
COMMD4-223ENST00000568301 TNNQ9UQP3 1299 aa18.5■□□□□ 0.55
COMMD4-223ENST00000568301 ATAD5Q96QE3 1844 aa18.49■□□□□ 0.55
COMMD4-223ENST00000568301 IGSF3O75054 1194 aa18.49■□□□□ 0.55
COMMD4-223ENST00000568301 POLA2Q14181 598 aa18.49■□□□□ 0.55
COMMD4-223ENST00000568301 DIS3LQ8TF46 1054 aaKnown RBP18.49■□□□□ 0.55
COMMD4-223ENST00000568301 LRCH3Q96II8 777 aa18.49■□□□□ 0.55
COMMD4-223ENST00000568301 NOL10Q9BSC4 688 aaKnown RBP18.49■□□□□ 0.55
COMMD4-223ENST00000568301 DHX36Q9H2U1 1008 aaKnown RBP18.49■□□□□ 0.55
COMMD4-223ENST00000568301 PI4KBQ9UBF8 816 aa18.49■□□□□ 0.55
COMMD4-223ENST00000568301 DNAH12Q6ZR08 3092 aa18.48■□□□□ 0.55
COMMD4-223ENST00000568301 A0A1W2PPC1 479 aa18.48■□□□□ 0.55
COMMD4-223ENST00000568301 BAG3O95817 575 aa18.48■□□□□ 0.55
COMMD4-223ENST00000568301 PLCG2P16885 1265 aa18.48■□□□□ 0.55
COMMD4-223ENST00000568301 GCLCP48506 637 aaPredicted RBP18.48■□□□□ 0.55
COMMD4-223ENST00000568301 PPP4CP60510 307 aa18.48■□□□□ 0.55
COMMD4-223ENST00000568301 PABPC4Q13310 644 aaKnown RBP eCLIP18.48■□□□□ 0.55
COMMD4-223ENST00000568301 FAM110CQ1W6H9 321 aa18.48■□□□□ 0.55
COMMD4-223ENST00000568301 CCDC158Q5M9N0 1113 aa18.48■□□□□ 0.55
COMMD4-223ENST00000568301 ZKSCAN2Q63HK3 967 aa18.48■□□□□ 0.55
COMMD4-223ENST00000568301 TEX11Q8IYF3 940 aa18.48■□□□□ 0.55
COMMD4-223ENST00000568301 SLC17A8Q8NDX2 589 aa18.48■□□□□ 0.55
COMMD4-223ENST00000568301 LAMA2P24043 3122 aaKnown RBP18.48■□□□□ 0.55
COMMD4-223ENST00000568301 USP17L5A8MUK1 530 aa18.47■□□□□ 0.55
COMMD4-223ENST00000568301 ATP8B2P98198 1209 aa18.47■□□□□ 0.55
COMMD4-223ENST00000568301 TNNI3KQ59H18 835 aa18.47■□□□□ 0.55
COMMD4-223ENST00000568301 SH3D19Q5HYK7 790 aa18.47■□□□□ 0.55
COMMD4-223ENST00000568301 NAA16Q6N069 864 aaPredicted RBP18.47■□□□□ 0.55
COMMD4-223ENST00000568301 TMEM57Q8N5G2 664 aa18.47■□□□□ 0.55
COMMD4-223ENST00000568301 SSH3Q8TE77 659 aa18.47■□□□□ 0.55
COMMD4-223ENST00000568301 SH3RF3Q8TEJ3 882 aaPredicted RBP18.47■□□□□ 0.55
COMMD4-223ENST00000568301 ZNF512BQ96KM6 892 aaPredicted RBP18.47■□□□□ 0.55
COMMD4-223ENST00000568301 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.47■□□□□ 0.55
COMMD4-223ENST00000568301 FPGT-TNNI3KV9GXZ4 949 aa18.47■□□□□ 0.55
COMMD4-223ENST00000568301 LOC285556D6RIA3 1793 aa18.47■□□□□ 0.55
COMMD4-223ENST00000568301 RRP1BQ14684 758 aaKnown RBP18.46■□□□□ 0.55
COMMD4-223ENST00000568301 TTC39AQ5SRH9 613 aa18.46■□□□□ 0.55
COMMD4-223ENST00000568301 NECAB2Q7Z6G3 386 aa18.46■□□□□ 0.55
COMMD4-223ENST00000568301 FOXP4Q8IVH2 680 aaPredicted RBP18.46■□□□□ 0.55
COMMD4-223ENST00000568301 AS3MTQ9HBK9 375 aa18.46■□□□□ 0.55
COMMD4-223ENST00000568301 HMGCS2P54868 508 aa18.45■□□□□ 0.54
COMMD4-223ENST00000568301 TRIM32Q13049 653 aa18.45■□□□□ 0.54
COMMD4-223ENST00000568301 METTL16Q86W50 562 aaKnown RBP18.45■□□□□ 0.54
COMMD4-223ENST00000568301 WDR18Q9BV38 432 aa18.45■□□□□ 0.54
COMMD4-223ENST00000568301 SNRKQ9NRH2 765 aa18.45■□□□□ 0.54
COMMD4-223ENST00000568301 AATFQ9NY61 560 aaKnown RBP eCLIP18.45■□□□□ 0.54
COMMD4-223ENST00000568301 GJD2Q9UKL4 321 aa18.45■□□□□ 0.54
COMMD4-223ENST00000568301 CDK5RAP2Q96SN8 1893 aa18.45■□□□□ 0.54
COMMD4-223ENST00000568301 UNC80Q8N2C7 3258 aa18.45■□□□□ 0.54
COMMD4-223ENST00000568301 DLL1O00548 723 aa18.44■□□□□ 0.54
COMMD4-223ENST00000568301 SURF6O75683 361 aaKnown RBP18.44■□□□□ 0.54
COMMD4-223ENST00000568301 ASNSP08243 561 aa18.44■□□□□ 0.54
COMMD4-223ENST00000568301 OS9Q13438 667 aaPredicted RBP18.44■□□□□ 0.54
COMMD4-223ENST00000568301 DBNDD2Q9BQY9 259 aa18.44■□□□□ 0.54
COMMD4-223ENST00000568301 ASCC2Q9H1I8 757 aaPredicted RBP18.44■□□□□ 0.54
COMMD4-223ENST00000568301 GINM1Q9NU53 330 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms