RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 AGXT2Q9BYV1 514 aa10.09□□□□□ -0.79
VAPB-206ENST00000520497 PDRG1Q9NUG6 133 aa10.09□□□□□ -0.79
VAPB-206ENST00000520497 USP40Q9NVE5 1235 aa10.09□□□□□ -0.79
VAPB-206ENST00000520497 MCM9Q9NXL9 1143 aa10.09□□□□□ -0.79
VAPB-206ENST00000520497 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.09□□□□□ -0.79
VAPB-206ENST00000520497 TCHHQ07283 1943 aa10.08□□□□□ -0.8
VAPB-206ENST00000520497 SHTN1A0MZ66 631 aa10.08□□□□□ -0.8
VAPB-206ENST00000520497 GLTPD2A6NH11 291 aa10.08□□□□□ -0.8
VAPB-206ENST00000520497 MINDY4BA8MYZ0 360 aa10.08□□□□□ -0.8
VAPB-206ENST00000520497 ORC4O43929 436 aa10.08□□□□□ -0.8
VAPB-206ENST00000520497 POTEIP0CG38 1075 aa10.08□□□□□ -0.8
VAPB-206ENST00000520497 POTEJP0CG39 1038 aa10.08□□□□□ -0.8
VAPB-206ENST00000520497 CYP2D6P10635 497 aa10.08□□□□□ -0.8
VAPB-206ENST00000520497 PCP11498 1178 aaKnown RBP10.08□□□□□ -0.8
VAPB-206ENST00000520497 GMPSP49915 693 aaPredicted RBP10.08□□□□□ -0.8
VAPB-206ENST00000520497 RBM5P52756 815 aaKnown RBP eCLIP10.08□□□□□ -0.8
VAPB-206ENST00000520497 ANTXR2P58335 489 aa10.08□□□□□ -0.8
VAPB-206ENST00000520497 NFIAQ12857 509 aa10.08□□□□□ -0.8
VAPB-206ENST00000520497 TOB2Q14106 344 aaPredicted RBP10.08□□□□□ -0.8
VAPB-206ENST00000520497 IFFO2Q5TF58 517 aa10.08□□□□□ -0.8
VAPB-206ENST00000520497 DHX32Q7L7V1 743 aaKnown RBP10.08□□□□□ -0.8
VAPB-206ENST00000520497 OSBPL5Q9H0X9 879 aaPredicted RBP10.08□□□□□ -0.8
VAPB-206ENST00000520497 RNF41Q9H4P4 317 aaPredicted RBP10.08□□□□□ -0.8
VAPB-206ENST00000520497 CNNM2Q9H8M5 875 aa10.08□□□□□ -0.8
VAPB-206ENST00000520497 ATRNL1Q5VV63 1379 aa10.08□□□□□ -0.8
VAPB-206ENST00000520497 BAZ2BQ9UIF8 2168 aaKnown RBP10.08□□□□□ -0.8
VAPB-206ENST00000520497 DDNO94850 711 aaPredicted RBP10.07□□□□□ -0.8
VAPB-206ENST00000520497 MCM5P33992 734 aa10.07□□□□□ -0.8
VAPB-206ENST00000520497 PLCD1P51178 756 aa10.07□□□□□ -0.8
VAPB-206ENST00000520497 TRDNQ13061 729 aa10.07□□□□□ -0.8
VAPB-206ENST00000520497 DLGAP5Q15398 846 aa10.07□□□□□ -0.8
VAPB-206ENST00000520497 MFSD6Q6ZSS7 791 aa10.07□□□□□ -0.8
VAPB-206ENST00000520497 CYB5R4Q7L1T6 521 aa10.07□□□□□ -0.8
VAPB-206ENST00000520497 RALYLQ86SE5 291 aaKnown RBP10.07□□□□□ -0.8
VAPB-206ENST00000520497 GPC2Q8N158 579 aa10.07□□□□□ -0.8
VAPB-206ENST00000520497 TCEANC2Q96MN5 208 aa10.07□□□□□ -0.8
VAPB-206ENST00000520497 KRT23Q9C075 422 aa10.07□□□□□ -0.8
VAPB-206ENST00000520497 TDRD3Q9H7E2 651 aaKnown RBP10.07□□□□□ -0.8
VAPB-206ENST00000520497 MYOZ2Q9NPC6 264 aa10.07□□□□□ -0.8
VAPB-206ENST00000520497 INCENPQ9NQS7 918 aa10.07□□□□□ -0.8
VAPB-206ENST00000520497 FAM198AQ9UFP1 575 aa10.07□□□□□ -0.8
VAPB-206ENST00000520497 MYH15Q9Y2K3 1946 aa10.07□□□□□ -0.8
VAPB-206ENST00000520497 ZC3H4Q9UPT8 1303 aaKnown RBP10.07□□□□□ -0.8
VAPB-206ENST00000520497 PAPPA2Q9BXP8 1791 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 B4E1Z4 1266 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 PITPNM1O00562 1244 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 WNT10BO00744 389 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 KDM4AO75164 1064 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 SLC4A3P48751 1232 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 NT5C2P49902 561 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 GABPAQ06546 454 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 PICALMQ13492 652 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 ANKRD1Q15327 319 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 FKBP1CQ5VVH2 108 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 Q6ZUG5 572 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 C16orf86Q6ZW13 317 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 MICALL2Q8IY33 904 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 AMOTL1Q8IY63 956 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 TMX3Q96JJ7 454 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 MTA3Q9BTC8 594 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 ZNF70Q9UC06 446 aaPredicted RBP10.06□□□□□ -0.8
VAPB-206ENST00000520497 SAP30BPQ9UHR5 308 aaKnown RBP10.06□□□□□ -0.8
VAPB-206ENST00000520497 LIMCH1Q9UPQ0 1083 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 GJA3Q9Y6H8 435 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 OTOFQ9HC10 1997 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 DOCK1Q14185 1865 aa10.06□□□□□ -0.8
VAPB-206ENST00000520497 CNTNAP1P78357 1384 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 PRC1O43663 620 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 ENTPD3O75355 529 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 EGFRP00533 1210 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 POLR3DP05423 398 aaPredicted RBP10.05□□□□□ -0.8
VAPB-206ENST00000520497 SLC3A2P08195 630 aaKnown RBP10.05□□□□□ -0.8
VAPB-206ENST00000520497 VEGFAP15692 232 aaPredicted RBP10.05□□□□□ -0.8
VAPB-206ENST00000520497 CACNB3P54284 484 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 EVCP57679 992 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 PDE4BQ07343 736 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 FSTL1Q12841 308 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 CUL4AQ13619 759 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 SLC4A8Q2Y0W8 1093 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 SH3BP5LQ7L8J4 393 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 CHST3Q7LGC8 479 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 ESR2Q92731 530 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 KLRG1Q96E93 195 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 LRRC2Q9BYS8 371 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 EHD4Q9H223 541 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 DHX36Q9H2U1 1008 aaKnown RBP10.05□□□□□ -0.8
VAPB-206ENST00000520497 GPRC5DQ9NZD1 345 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 ZSWIM5Q9P217 1185 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 CNOT7Q9UIV1 285 aaKnown RBP10.05□□□□□ -0.8
VAPB-206ENST00000520497 TAOK2Q9UL54 1235 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 PHIPQ8WWQ0 1821 aa10.05□□□□□ -0.8
VAPB-206ENST00000520497 PLIN4Q96Q06 1357 aa10.04□□□□□ -0.8
VAPB-206ENST00000520497 DDTLA6NHG4 134 aaPredicted RBP10.04□□□□□ -0.8
VAPB-206ENST00000520497 SH2B2O14492 632 aaPredicted RBP10.04□□□□□ -0.8
VAPB-206ENST00000520497 LARGE1O95461 756 aa10.04□□□□□ -0.8
VAPB-206ENST00000520497 RASA1P20936 1047 aa10.04□□□□□ -0.8
VAPB-206ENST00000520497 CDK8P49336 464 aa10.04□□□□□ -0.8
VAPB-206ENST00000520497 NBPF9Q3BBW0 867 aa10.04□□□□□ -0.8
VAPB-206ENST00000520497 NOL8Q76FK4 1167 aaKnown RBP10.04□□□□□ -0.8
VAPB-206ENST00000520497 TTC6Q86TZ1 520 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms