RNA–Protein interactions for RNA: ENST00000375224.1

UBR4-202, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 3,475 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-202ENST00000375224 RAB11FIP4Q86YS3 637 aa9.5□□□□□ -0.89
UBR4-202ENST00000375224 NSUN4Q96CB9 384 aaKnown RBP9.5□□□□□ -0.89
UBR4-202ENST00000375224 CCDC88AQ3V6T2 1871 aa9.5□□□□□ -0.89
UBR4-202ENST00000375224 FMNL1O95466 1100 aaPredicted RBP9.5□□□□□ -0.89
UBR4-202ENST00000375224 CDC27P30260 824 aa9.5□□□□□ -0.89
UBR4-202ENST00000375224 ST5P78524 1137 aa9.5□□□□□ -0.89
UBR4-202ENST00000375224 NFIXQ14938 502 aa9.5□□□□□ -0.89
UBR4-202ENST00000375224 NTRK3Q16288 839 aa9.5□□□□□ -0.89
UBR4-202ENST00000375224 RTN1Q16799 776 aa9.5□□□□□ -0.89
UBR4-202ENST00000375224 JMYQ8N9B5 988 aa9.5□□□□□ -0.89
UBR4-202ENST00000375224 WDR66Q8TBY9 1149 aa9.5□□□□□ -0.89
UBR4-202ENST00000375224 ATP8A2Q9NTI2 1148 aa9.5□□□□□ -0.89
UBR4-202ENST00000375224 MAST2Q6P0Q8 1798 aa9.49□□□□□ -0.89
UBR4-202ENST00000375224 SAFBQ15424 915 aaKnown RBP eCLIP9.49□□□□□ -0.89
UBR4-202ENST00000375224 ADGRA1Q86SQ6 560 aa9.49□□□□□ -0.89
UBR4-202ENST00000375224 LINC00301Q8NCQ3 95 aa9.49□□□□□ -0.89
UBR4-202ENST00000375224 SDR42E1Q8WUS8 393 aa9.49□□□□□ -0.89
UBR4-202ENST00000375224 MRPS27Q92552 414 aaKnown RBP9.49□□□□□ -0.89
UBR4-202ENST00000375224 XDHP47989 1333 aa9.49□□□□□ -0.89
UBR4-202ENST00000375224 SPTLC2O15270 562 aa9.49□□□□□ -0.89
UBR4-202ENST00000375224 PPFIA3O75145 1194 aa9.49□□□□□ -0.89
UBR4-202ENST00000375224 KRT40Q6A162 431 aa9.49□□□□□ -0.89
UBR4-202ENST00000375224 IQCA1Q86XH1 822 aa9.49□□□□□ -0.89
UBR4-202ENST00000375224 FSIP1Q8NA03 581 aa9.49□□□□□ -0.89
UBR4-202ENST00000375224 RPGRQ92834 1020 aaKnown RBP9.49□□□□□ -0.89
UBR4-202ENST00000375224 PLCD4Q9BRC7 762 aa9.49□□□□□ -0.89
UBR4-202ENST00000375224 ANKIB1Q9P2G1 1089 aa9.49□□□□□ -0.89
UBR4-202ENST00000375224 POLR3DP05423 398 aaPredicted RBP9.48□□□□□ -0.89
UBR4-202ENST00000375224 FGRP09769 529 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 HSPA1LP34931 641 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 GSTO1P78417 241 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 MECOMQ03112 1051 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 ANO1Q5XXA6 986 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 OTUD7BQ6GQQ9 843 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 C15orf52Q6ZUT6 534 aaKnown RBP9.48□□□□□ -0.89
UBR4-202ENST00000375224 ZNF804AQ7Z570 1209 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 INCENPQ9NQS7 918 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 TFCP2L1Q9NZI6 479 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.48□□□□□ -0.89
UBR4-202ENST00000375224 MRVI1Q9Y6F6 885 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.48□□□□□ -0.89
UBR4-202ENST00000375224 TPM3P06753 285 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 CALM1P0DP23 149 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 CALM2P0DP24 149 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 CALM3P0DP25 149 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 CHAF1AQ13111 956 aaPredicted RBP9.48□□□□□ -0.89
UBR4-202ENST00000375224 CKAP2LQ8IYA6 745 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 SLC26A6Q9BXS9 759 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 QTRT2Q9H974 415 aaKnown RBP9.48□□□□□ -0.89
UBR4-202ENST00000375224 FAM217BQ9NTX9 383 aaPredicted RBP9.48□□□□□ -0.89
UBR4-202ENST00000375224 ARPP21Q9UBL0 812 aaPredicted RBP9.48□□□□□ -0.89
UBR4-202ENST00000375224 USP25Q9UHP3 1055 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 PCDHA7Q9UN72 937 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 DEXIO95424 95 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 ADCY5O95622 1261 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 RXRAP19793 462 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 DYNLL1P63167 89 aaKnown RBP9.48□□□□□ -0.89
UBR4-202ENST00000375224 ZNF654Q8IZM8 581 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 RBM17Q96I25 401 aaKnown RBP9.48□□□□□ -0.89
UBR4-202ENST00000375224 SENP2Q9HC62 589 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 ZKSCAN5Q9Y2L8 839 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 TACC3Q9Y6A5 838 aa9.48□□□□□ -0.89
UBR4-202ENST00000375224 LDHCP07864 332 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 XBP1P17861 261 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 U2AF2P26368 475 aaKnown RBP eCLIP9.47□□□□□ -0.894e-9■■■■□ 23.1
UBR4-202ENST00000375224 SBK1Q52WX2 424 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 DZIP1Q86YF9 867 aaKnown RBP9.47□□□□□ -0.89
UBR4-202ENST00000375224 CCDC144CPQ8IYA2 1237 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 FANCBQ8NB91 859 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 ENGASEQ8NFI3 743 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 NKX2-3Q8TAU0 364 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 PHKBQ93100 1093 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 ZSCAN10Q96SZ4 725 aaPredicted RBP9.47□□□□□ -0.89
UBR4-202ENST00000375224 RBM28Q9NW13 759 aaKnown RBP9.47□□□□□ -0.89
UBR4-202ENST00000375224 UBR3Q6ZT12 1888 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 KIAA1551Q9HCM1 1747 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 WTIPA6NIX2 430 aaPredicted RBP9.47□□□□□ -0.89
UBR4-202ENST00000375224 GOLGA6L6A8MZA4 724 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 ORC4O43929 436 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 PPP6R2O75170 966 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 AKAP17AQ02040 695 aaKnown RBP9.47□□□□□ -0.89
UBR4-202ENST00000375224 ANO6Q4KMQ2 910 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 PRR5LQ6MZQ0 368 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 CATIPQ7Z7H3 387 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 AMIGO3Q86WK7 504 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 CCDC24Q8N4L8 307 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 NOL10Q9BSC4 688 aaKnown RBP9.47□□□□□ -0.89
UBR4-202ENST00000375224 FTOQ9C0B1 505 aaKnown RBP eCLIP9.47□□□□□ -0.89
UBR4-202ENST00000375224 LRRC4BQ9NT99 713 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 CLIC4Q9Y696 253 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 TNKSO95271 1327 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 TNRC6CQ9HCJ0 1690 aaKnown RBP9.47□□□□□ -0.89
UBR4-202ENST00000375224 LDHBP07195 334 aaKnown RBP9.47□□□□□ -0.89
UBR4-202ENST00000375224 ATP2B4P23634 1241 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 KLRK1P26718 216 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 PDE4BQ07343 736 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 SNW1Q13573 536 aaKnown RBP9.47□□□□□ -0.89
UBR4-202ENST00000375224 SLC39A14Q15043 492 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 SEC23AQ15436 765 aa9.47□□□□□ -0.89
UBR4-202ENST00000375224 STX1AQ16623 288 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms