RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 LOC100996750A0A140TA64 210 aa3.51□□□□□ -1.85
CLIP1-219ENST00000620786 FLGP20930 4061 aaPredicted RBP3.51□□□□□ -1.85
CLIP1-219ENST00000620786 KRTAP4-3Q9BYR4 195 aa3.49□□□□□ -1.85
CLIP1-219ENST00000620786 LCE1BQ5T7P3 118 aa3.48□□□□□ -1.85
CLIP1-219ENST00000620786 KRTAP20-1Q3LI63 56 aa3.47□□□□□ -1.85
CLIP1-219ENST00000620786 LCE1DQ5T752 114 aa3.46□□□□□ -1.85
CLIP1-219ENST00000620786 LCE2AQ5TA79 106 aaPredicted RBP3.46□□□□□ -1.86
CLIP1-219ENST00000620786 EPPK1P58107 5090 aaKnown RBP3.4□□□□□ -1.87
CLIP1-219ENST00000620786 KRTAP9-7A8MTY7 169 aa3.38□□□□□ -1.87
CLIP1-219ENST00000620786 PRM1P04553 51 aa3.36□□□□□ -1.87
CLIP1-219ENST00000620786 ABCA13Q86UQ4 5058 aa3.35□□□□□ -1.87
CLIP1-219ENST00000620786 MT1AP04731 61 aa3.33□□□□□ -1.88
CLIP1-219ENST00000620786 KRTAP19-7Q3SYF9 63 aa3.31□□□□□ -1.88
CLIP1-219ENST00000620786 KRTAP6-3Q3LI67 103 aa3.3□□□□□ -1.88
CLIP1-219ENST00000620786 LCE5AQ5TCM9 118 aa3.3□□□□□ -1.88
CLIP1-219ENST00000620786 KRTAP2-3P0C7H8 128 aa3.28□□□□□ -1.89
CLIP1-219ENST00000620786 KRTAP2-4Q9BYR9 128 aa3.28□□□□□ -1.89
CLIP1-219ENST00000620786 FAT4Q6V0I7 4981 aa3.27□□□□□ -1.89
CLIP1-219ENST00000620786 RNF213Q63HN8 5207 aa3.24□□□□□ -1.89
CLIP1-219ENST00000620786 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.23□□□□□ -1.89
CLIP1-219ENST00000620786 KRTAP4-9Q9BYQ8 210 aa3.22□□□□□ -1.89
CLIP1-219ENST00000620786 KRTAP2-1Q9BYU5 128 aa3.22□□□□□ -1.89
CLIP1-219ENST00000620786 LCE1AQ5T7P2 110 aa3.22□□□□□ -1.89
CLIP1-219ENST00000620786 MUC2Q02817 5179 aa3.19□□□□□ -1.9
CLIP1-219ENST00000620786 HMCN2Q8NDA2 5059 aa3.18□□□□□ -1.9
CLIP1-219ENST00000620786 LCE4AQ5TA78 99 aa3.16□□□□□ -1.9
CLIP1-219ENST00000620786 SYNE2Q8WXH0 6885 aaKnown RBP3.16□□□□□ -1.9
CLIP1-219ENST00000620786 KRTAP2-2Q9BYT5 123 aa3.14□□□□□ -1.91
CLIP1-219ENST00000620786 KRTAP6-2Q3LI66 62 aa3.13□□□□□ -1.91
CLIP1-219ENST00000620786 FSIP2Q5CZC0 6907 aa3.13□□□□□ -1.91
CLIP1-219ENST00000620786 KRTAP6-1Q3LI64 71 aa3.12□□□□□ -1.91
CLIP1-219ENST00000620786 KRTAP9-4Q9BYQ2 154 aa3.11□□□□□ -1.91
CLIP1-219ENST00000620786 UBR4Q5T4S7 5183 aa3.09□□□□□ -1.91
CLIP1-219ENST00000620786 LCE1CQ5T751 118 aa3.03□□□□□ -1.93
CLIP1-219ENST00000620786 LCE1EQ5T753 118 aa3.03□□□□□ -1.93
CLIP1-219ENST00000620786 LCE1FQ5T754 118 aa3.03□□□□□ -1.93
CLIP1-219ENST00000620786 SYNE1Q8NF91 8797 aaKnown RBP2.95□□□□□ -1.94
CLIP1-219ENST00000620786 KRTAP9-6A8MVA2 160 aa2.94□□□□□ -1.94
CLIP1-219ENST00000620786 KRTAP9-9Q9BYP9 154 aa2.84□□□□□ -1.96
CLIP1-219ENST00000620786 OBSCNQ5VST9 7968 aa2.76□□□□□ -1.97
CLIP1-219ENST00000620786 USH2AO75445 5202 aa2.74□□□□□ -1.97
CLIP1-219ENST00000620786 KRTAP5-9P26371 169 aa2.69□□□□□ -1.98
CLIP1-219ENST00000620786 NEBP20929 6669 aa2.67□□□□□ -1.98
CLIP1-219ENST00000620786 KRTAP4-6Q9BYQ5 205 aa2.65□□□□□ -1.99
CLIP1-219ENST00000620786 KRTAP20-2Q3LI61 65 aa2.61□□□□□ -1.99
CLIP1-219ENST00000620786 MACF1Q9UPN3 7388 aaKnown RBP2.58□□□□□ -2
CLIP1-219ENST00000620786 KMT2DO14686 5537 aa2.57□□□□□ -2
CLIP1-219ENST00000620786 SSPOA2VEC9 5147 aa2.56□□□□□ -2
CLIP1-219ENST00000620786 KRTAP4-11Q9BYQ6 195 aa2.49□□□□□ -2.01
CLIP1-219ENST00000620786 FCGBPQ9Y6R7 5405 aaPredicted RBP2.47□□□□□ -2.01
CLIP1-219ENST00000620786 KRTAP5-4Q6L8H1 288 aa2.45□□□□□ -2.02
CLIP1-219ENST00000620786 DSTQ03001 7570 aaKnown RBP2.43□□□□□ -2.02
CLIP1-219ENST00000620786 KRTAP4-12Q9BQ66 201 aa2.43□□□□□ -2.02
CLIP1-219ENST00000620786 KRTAP4-2Q9BYR5 136 aa2.43□□□□□ -2.02
CLIP1-219ENST00000620786 KRTAP4-4Q9BYR3 166 aa2.41□□□□□ -2.02
CLIP1-219ENST00000620786 MUC19Q7Z5P9 8384 aa2.37□□□□□ -2.03
CLIP1-219ENST00000620786 MUC12Q9UKN1 5478 aa2.34□□□□□ -2.03
CLIP1-219ENST00000620786 MDN1Q9NU22 5596 aa2.21□□□□□ -2.06
CLIP1-219ENST00000620786 KRTAP5-5Q701N2 237 aaPredicted RBP2.18□□□□□ -2.06
CLIP1-219ENST00000620786 KRTAP5-3Q6L8H2 238 aa2.13□□□□□ -2.07
CLIP1-219ENST00000620786 GPR98Q8WXG9 6306 aa2.11□□□□□ -2.07
CLIP1-219ENST00000620786 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.03□□□□□ -2.08
CLIP1-219ENST00000620786 KRTAP5-8O75690 187 aa1.97□□□□□ -2.09
CLIP1-219ENST00000620786 MUC5ACP98088 5654 aa1.9□□□□□ -2.11
CLIP1-219ENST00000620786 PHGR1C9JFL3 82 aa1.88□□□□□ -2.11
CLIP1-219ENST00000620786 KRTAP5-2Q701N4 177 aa1.87□□□□□ -2.11
CLIP1-219ENST00000620786 AHNAK2Q8IVF2 5795 aa1.82□□□□□ -2.12
CLIP1-219ENST00000620786 HMCN1Q96RW7 5635 aa1.79□□□□□ -2.12
CLIP1-219ENST00000620786 KRTAP5-10Q6L8G5 202 aa1.75□□□□□ -2.13
CLIP1-219ENST00000620786 MUC5BQ9HC84 5762 aaPredicted RBP1.69□□□□□ -2.14
CLIP1-219ENST00000620786 KRTAP5-11Q6L8G4 156 aa1.64□□□□□ -2.15
CLIP1-219ENST00000620786 KRTAP5-1Q6L8H4 278 aa1.62□□□□□ -2.15
CLIP1-219ENST00000620786 AHNAKQ09666 5890 aaKnown RBP1.54□□□□□ -2.16
CLIP1-219ENST00000620786 KRTAP21-2Q3LI59 83 aa1.51□□□□□ -2.17
CLIP1-219ENST00000620786 KRTAP5-7Q6L8G8 165 aa1.42□□□□□ -2.18
CLIP1-219ENST00000620786 KRTAP21-1Q3LI58 79 aa1.3□□□□□ -2.2
CLIP1-219ENST00000620786 MUC16Q8WXI7 14507 aa1.03□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 9.2 ms