RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 KRTAP2-4Q9BYR9 128 aa2.56□□□□□ -2
CSMD1-216ENST00000602557 KRTAP2-1Q9BYU5 128 aa2.56□□□□□ -2
CSMD1-216ENST00000602557 RYR2Q92736 4967 aa2.54□□□□□ -2
CSMD1-216ENST00000602557 HYDINQ4G0P3 5121 aa2.54□□□□□ -2
CSMD1-216ENST00000602557 HERC2O95714 4834 aa2.53□□□□□ -2
CSMD1-216ENST00000602557 KRTAP19-6Q3LI70 58 aa2.48□□□□□ -2.01
CSMD1-216ENST00000602557 KRTAP9-2Q9BYQ4 174 aa2.48□□□□□ -2.01
CSMD1-216ENST00000602557 KRTAP6-2Q3LI66 62 aa2.47□□□□□ -2.01
CSMD1-216ENST00000602557 KRTAP9-7A8MTY7 169 aa2.47□□□□□ -2.01
CSMD1-216ENST00000602557 HERC1Q15751 4861 aa2.47□□□□□ -2.01
CSMD1-216ENST00000602557 EPPK1P58107 5090 aaKnown RBP2.45□□□□□ -2.02
CSMD1-216ENST00000602557 BIRC6Q9NR09 4857 aa2.44□□□□□ -2.02
CSMD1-216ENST00000602557 MT1AP04731 61 aa2.43□□□□□ -2.02
CSMD1-216ENST00000602557 KRTAP19-7Q3SYF9 63 aa2.43□□□□□ -2.02
CSMD1-216ENST00000602557 KRTAP9-6A8MVA2 160 aa2.4□□□□□ -2.02
CSMD1-216ENST00000602557 LCE5AQ5TCM9 118 aa2.39□□□□□ -2.03
CSMD1-216ENST00000602557 SYNE2Q8WXH0 6885 aaKnown RBP2.36□□□□□ -2.03
CSMD1-216ENST00000602557 KRTAP6-1Q3LI64 71 aa2.33□□□□□ -2.04
CSMD1-216ENST00000602557 ABCA13Q86UQ4 5058 aa2.33□□□□□ -2.04
CSMD1-216ENST00000602557 RNF213Q63HN8 5207 aa2.32□□□□□ -2.04
CSMD1-216ENST00000602557 KRTAP20-1Q3LI63 56 aa2.3□□□□□ -2.04
CSMD1-216ENST00000602557 KRTAP9-6A0A140TA67 174 aa2.29□□□□□ -2.04
CSMD1-216ENST00000602557 LCE2AQ5TA79 106 aaPredicted RBP2.27□□□□□ -2.05
CSMD1-216ENST00000602557 MUC2Q02817 5179 aa2.26□□□□□ -2.05
CSMD1-216ENST00000602557 KRTAP2-2Q9BYT5 123 aa2.26□□□□□ -2.05
CSMD1-216ENST00000602557 FSIP2Q5CZC0 6907 aa2.25□□□□□ -2.05
CSMD1-216ENST00000602557 LCE1CQ5T751 118 aa2.25□□□□□ -2.05
CSMD1-216ENST00000602557 LCE1EQ5T753 118 aa2.25□□□□□ -2.05
CSMD1-216ENST00000602557 LCE1FQ5T754 118 aa2.25□□□□□ -2.05
CSMD1-216ENST00000602557 LCE1AQ5T7P2 110 aa2.25□□□□□ -2.05
CSMD1-216ENST00000602557 UBR4Q5T4S7 5183 aa2.24□□□□□ -2.05
CSMD1-216ENST00000602557 KRTAP9-4Q9BYQ2 154 aa2.22□□□□□ -2.05
CSMD1-216ENST00000602557 LCE4AQ5TA78 99 aa2.2□□□□□ -2.06
CSMD1-216ENST00000602557 FAT4Q6V0I7 4981 aa2.2□□□□□ -2.06
CSMD1-216ENST00000602557 SYNE1Q8NF91 8797 aaKnown RBP2.19□□□□□ -2.06
CSMD1-216ENST00000602557 HMCN2Q8NDA2 5059 aa2.17□□□□□ -2.06
CSMD1-216ENST00000602557 KRTAP6-3Q3LI67 103 aa2.14□□□□□ -2.07
CSMD1-216ENST00000602557 KRTAP4-11Q9BYQ6 195 aa2.14□□□□□ -2.07
CSMD1-216ENST00000602557 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.12□□□□□ -2.07
CSMD1-216ENST00000602557 USH2AO75445 5202 aa1.99□□□□□ -2.09
CSMD1-216ENST00000602557 KRTAP9-9Q9BYP9 154 aa1.99□□□□□ -2.09
CSMD1-216ENST00000602557 KMT2DO14686 5537 aa1.98□□□□□ -2.09
CSMD1-216ENST00000602557 KRTAP5-5Q701N2 237 aaPredicted RBP1.91□□□□□ -2.1
CSMD1-216ENST00000602557 KRTAP4-4Q9BYR3 166 aa1.9□□□□□ -2.11
CSMD1-216ENST00000602557 FCGBPQ9Y6R7 5405 aaPredicted RBP1.89□□□□□ -2.11
CSMD1-216ENST00000602557 KRTAP4-6Q9BYQ5 205 aa1.89□□□□□ -2.11
CSMD1-216ENST00000602557 KRTAP20-2Q3LI61 65 aa1.82□□□□□ -2.12
CSMD1-216ENST00000602557 NEBP20929 6669 aa1.8□□□□□ -2.12
CSMD1-216ENST00000602557 KRTAP5-9P26371 169 aa1.79□□□□□ -2.12
CSMD1-216ENST00000602557 OBSCNQ5VST9 7968 aa1.79□□□□□ -2.12
CSMD1-216ENST00000602557 KRTAP4-12Q9BQ66 201 aa1.78□□□□□ -2.12
CSMD1-216ENST00000602557 KRTAP4-2Q9BYR5 136 aa1.78□□□□□ -2.12
CSMD1-216ENST00000602557 MDN1Q9NU22 5596 aa1.75□□□□□ -2.13
CSMD1-216ENST00000602557 DSTQ03001 7570 aaKnown RBP1.73□□□□□ -2.13
CSMD1-216ENST00000602557 SSPOA2VEC9 5147 aa1.72□□□□□ -2.13
CSMD1-216ENST00000602557 MUC12Q9UKN1 5478 aa1.71□□□□□ -2.14
CSMD1-216ENST00000602557 KRTAP5-4Q6L8H1 288 aa1.66□□□□□ -2.14
CSMD1-216ENST00000602557 MACF1Q9UPN3 7388 aaKnown RBP1.65□□□□□ -2.15
CSMD1-216ENST00000602557 GPR98Q8WXG9 6306 aa1.6□□□□□ -2.15
CSMD1-216ENST00000602557 MUC19Q7Z5P9 8384 aa1.47□□□□□ -2.17
CSMD1-216ENST00000602557 KRTAP5-3Q6L8H2 238 aa1.44□□□□□ -2.18
CSMD1-216ENST00000602557 MUC5ACP98088 5654 aa1.43□□□□□ -2.18
CSMD1-216ENST00000602557 HMCN1Q96RW7 5635 aa1.39□□□□□ -2.19
CSMD1-216ENST00000602557 KRTAP5-2Q701N4 177 aa1.38□□□□□ -2.19
CSMD1-216ENST00000602557 KRTAP5-10Q6L8G5 202 aa1.34□□□□□ -2.19
CSMD1-216ENST00000602557 MUC5BQ9HC84 5762 aaPredicted RBP1.32□□□□□ -2.2
CSMD1-216ENST00000602557 KRTAP5-8O75690 187 aa1.32□□□□□ -2.2
CSMD1-216ENST00000602557 PHGR1C9JFL3 82 aa1.28□□□□□ -2.2
CSMD1-216ENST00000602557 AHNAK2Q8IVF2 5795 aa1.24□□□□□ -2.21
CSMD1-216ENST00000602557 AHNAKQ09666 5890 aaKnown RBP1.22□□□□□ -2.21
CSMD1-216ENST00000602557 KRTAP5-1Q6L8H4 278 aa1.2□□□□□ -2.22
CSMD1-216ENST00000602557 KRTAP21-1Q3LI58 79 aa1.17□□□□□ -2.22
CSMD1-216ENST00000602557 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.16□□□□□ -2.22
CSMD1-216ENST00000602557 KRTAP5-11Q6L8G4 156 aa1.14□□□□□ -2.23
CSMD1-216ENST00000602557 KRTAP21-2Q3LI59 83 aa1.12□□□□□ -2.23
CSMD1-216ENST00000602557 KRTAP5-7Q6L8G8 165 aa0.98□□□□□ -2.25
CSMD1-216ENST00000602557 MUC16Q8WXI7 14507 aa0.74□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 100 ms