RNA–Protein interactions for RNA: ENST00000568454.5

TSC2-222, Transcript of TSC complex subunit 2, human

APPRIS ALT2 TSL 2 BASIC

Gene TSC2, Length 5,434 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TSC2-222	ENST00000568454	ABCA13	Q86UQ4	5058 aa		4.93	□□□□□ -1.62
TSC2-222	ENST00000568454	KRTAP2-3	P0C7H8	128 aa		4.9	□□□□□ -1.62
TSC2-222	ENST00000568454	KRTAP2-4	Q9BYR9	128 aa		4.9	□□□□□ -1.62
TSC2-222	ENST00000568454	KRTAP2-1	Q9BYU5	128 aa		4.9	□□□□□ -1.62
TSC2-222	ENST00000568454	EPPK1	P58107	5090 aa	Known RBP	4.87	□□□□□ -1.63
TSC2-222	ENST00000568454	SYNE1	Q8NF91	8797 aa	Known RBP	4.85	□□□□□ -1.63
TSC2-222	ENST00000568454	KRTAP4-3	Q9BYR4	195 aa		4.85	□□□□□ -1.63
TSC2-222	ENST00000568454	MT1A	P04731	61 aa		4.81	□□□□□ -1.64
TSC2-222	ENST00000568454	KRTAP19-7	Q3SYF9	63 aa		4.81	□□□□□ -1.64
TSC2-222	ENST00000568454	LCE2A	Q5TA79	106 aa	Predicted RBP	4.8	□□□□□ -1.64
TSC2-222	ENST00000568454	LCE1B	Q5T7P3	118 aa		4.76	□□□□□ -1.65
TSC2-222	ENST00000568454	FAT4	Q6V0I7	4981 aa		4.75	□□□□□ -1.65
TSC2-222	ENST00000568454	MT4	P47944	62 aa		4.74	□□□□□ -1.65
TSC2-222	ENST00000568454	RNF213	Q63HN8	5207 aa		4.74	□□□□□ -1.65
TSC2-222	ENST00000568454	LCE1D	Q5T752	114 aa		4.73	□□□□□ -1.65
TSC2-222	ENST00000568454	HMCN2	Q8NDA2	5059 aa		4.7	□□□□□ -1.66
TSC2-222	ENST00000568454	KRTAP4-9	Q9BYQ8	210 aa		4.68	□□□□□ -1.66
TSC2-222	ENST00000568454	UBR4	Q5T4S7	5183 aa		4.63	□□□□□ -1.67
TSC2-222	ENST00000568454	KRTAP9-2	Q9BYQ4	174 aa		4.59	□□□□□ -1.67
TSC2-222	ENST00000568454	KRTAP9-6	A8MVA2	160 aa		4.51	□□□□□ -1.69
TSC2-222	ENST00000568454	KRTAP6-2	Q3LI66	62 aa		4.51	□□□□□ -1.69
TSC2-222	ENST00000568454	KRTAP6-1	Q3LI64	71 aa		4.43	□□□□□ -1.7
TSC2-222	ENST00000568454	LCE5A	Q5TCM9	118 aa		4.41	□□□□□ -1.7
TSC2-222	ENST00000568454	OBSCN	Q5VST9	7968 aa		4.4	□□□□□ -1.7
TSC2-222	ENST00000568454	LCE1A	Q5T7P2	110 aa		4.39	□□□□□ -1.71
TSC2-222	ENST00000568454	KRTAP9-4	Q9BYQ2	154 aa		4.38	□□□□□ -1.71
TSC2-222	ENST00000568454	FSIP2	Q5CZC0	6907 aa		4.37	□□□□□ -1.71
TSC2-222	ENST00000568454	MUC2	Q02817	5179 aa		4.32	□□□□□ -1.72
TSC2-222	ENST00000568454	KRTAP9-7	A8MTY7	169 aa		4.32	□□□□□ -1.72
TSC2-222	ENST00000568454	KRTAP9-6	A0A140TA67	174 aa		4.26	□□□□□ -1.73
TSC2-222	ENST00000568454	KRTAP6-3	Q3LI67	103 aa		4.24	□□□□□ -1.73
TSC2-222	ENST00000568454	SYNE2	Q8WXH0	6885 aa	Known RBP	4.15	□□□□□ -1.74
TSC2-222	ENST00000568454	LCE4A	Q5TA78	99 aa		4.15	□□□□□ -1.75
TSC2-222	ENST00000568454	KRTAP2-2	Q9BYT5	123 aa		4.1	□□□□□ -1.75
TSC2-222	ENST00000568454	KRTAP20-1	Q3LI63	56 aa		4.07	□□□□□ -1.76
TSC2-222	ENST00000568454	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.02	□□□□□ -1.77
TSC2-222	ENST00000568454	LCE1C	Q5T751	118 aa		4.01	□□□□□ -1.77
TSC2-222	ENST00000568454	LCE1E	Q5T753	118 aa		4.01	□□□□□ -1.77
TSC2-222	ENST00000568454	LCE1F	Q5T754	118 aa		4.01	□□□□□ -1.77
TSC2-222	ENST00000568454	USH2A	O75445	5202 aa		3.98	□□□□□ -1.77
TSC2-222	ENST00000568454	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.87	□□□□□ -1.79
TSC2-222	ENST00000568454	KRTAP5-9	P26371	169 aa		3.78	□□□□□ -1.8
TSC2-222	ENST00000568454	KRTAP4-11	Q9BYQ6	195 aa		3.75	□□□□□ -1.81
TSC2-222	ENST00000568454	KMT2D	O14686	5537 aa		3.75	□□□□□ -1.81
TSC2-222	ENST00000568454	DST	Q03001	7570 aa	Known RBP	3.7	□□□□□ -1.82
TSC2-222	ENST00000568454	SSPO	A2VEC9	5147 aa		3.66	□□□□□ -1.82
TSC2-222	ENST00000568454	MACF1	Q9UPN3	7388 aa	Known RBP	3.6	□□□□□ -1.83
TSC2-222	ENST00000568454	MUC19	Q7Z5P9	8384 aa		3.58	□□□□□ -1.84
TSC2-222	ENST00000568454	KRTAP9-9	Q9BYP9	154 aa		3.57	□□□□□ -1.84
TSC2-222	ENST00000568454	MUC12	Q9UKN1	5478 aa		3.51	□□□□□ -1.85
TSC2-222	ENST00000568454	KRTAP20-2	Q3LI61	65 aa		3.49	□□□□□ -1.85
TSC2-222	ENST00000568454	KRTAP4-6	Q9BYQ5	205 aa		3.47	□□□□□ -1.85
TSC2-222	ENST00000568454	NEB	P20929	6669 aa		3.45	□□□□□ -1.86
TSC2-222	ENST00000568454	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.44	□□□□□ -1.86
TSC2-222	ENST00000568454	KRTAP4-4	Q9BYR3	166 aa		3.28	□□□□□ -1.88
TSC2-222	ENST00000568454	KRTAP5-4	Q6L8H1	288 aa		3.27	□□□□□ -1.89
TSC2-222	ENST00000568454	MDN1	Q9NU22	5596 aa		3.26	□□□□□ -1.89
TSC2-222	ENST00000568454	KRTAP4-12	Q9BQ66	201 aa		3.13	□□□□□ -1.91
TSC2-222	ENST00000568454	KRTAP4-2	Q9BYR5	136 aa		3.13	□□□□□ -1.91
TSC2-222	ENST00000568454	GPR98	Q8WXG9	6306 aa		3.13	□□□□□ -1.91
TSC2-222	ENST00000568454	KRTAP5-3	Q6L8H2	238 aa		2.85	□□□□□ -1.95
TSC2-222	ENST00000568454	MUC5AC	P98088	5654 aa		2.78	□□□□□ -1.96
TSC2-222	ENST00000568454	KRTAP5-10	Q6L8G5	202 aa		2.71	□□□□□ -1.97
TSC2-222	ENST00000568454	KRTAP5-2	Q701N4	177 aa		2.71	□□□□□ -1.98
TSC2-222	ENST00000568454	HMCN1	Q96RW7	5635 aa		2.67	□□□□□ -1.98
TSC2-222	ENST00000568454	AHNAK2	Q8IVF2	5795 aa		2.55	□□□□□ -2
TSC2-222	ENST00000568454	KRTAP5-8	O75690	187 aa		2.54	□□□□□ -2
TSC2-222	ENST00000568454	KRTAP5-11	Q6L8G4	156 aa		2.39	□□□□□ -2.03
TSC2-222	ENST00000568454	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.36	□□□□□ -2.03
TSC2-222	ENST00000568454	KRTAP5-1	Q6L8H4	278 aa		2.32	□□□□□ -2.04
TSC2-222	ENST00000568454	KRTAP21-2	Q3LI59	83 aa		2.28	□□□□□ -2.04
TSC2-222	ENST00000568454	KRTAP21-1	Q3LI58	79 aa		2.25	□□□□□ -2.05
TSC2-222	ENST00000568454	PHGR1	C9JFL3	82 aa		2.23	□□□□□ -2.05
TSC2-222	ENST00000568454	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.21	□□□□□ -2.06
TSC2-222	ENST00000568454	AHNAK	Q09666	5890 aa	Known RBP	2.15	□□□□□ -2.07
TSC2-222	ENST00000568454	KRTAP5-7	Q6L8G8	165 aa		1.94	□□□□□ -2.1
TSC2-222	ENST00000568454	MUC16	Q8WXI7	14507 aa		1.37	□□□□□ -2.19

Retrieved 77 of 20,778 RNA–protein pairs in 1369.8 ms