RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 LCE2DQ5TA82 110 aaPredicted RBP4.11□□□□□ -1.75
CSPG4P11-201ENST00000560634 MT1MQ8N339 61 aa4.07□□□□□ -1.76
CSPG4P11-201ENST00000560634 HMCN2Q8NDA2 5059 aa4.04□□□□□ -1.76
CSPG4P11-201ENST00000560634 PRM1P04553 51 aa4.04□□□□□ -1.76
CSPG4P11-201ENST00000560634 KRTAP9-2Q9BYQ4 174 aa4.03□□□□□ -1.76
CSPG4P11-201ENST00000560634 MUC2Q02817 5179 aa4□□□□□ -1.77
CSPG4P11-201ENST00000560634 LCE2AQ5TA79 106 aaPredicted RBP4□□□□□ -1.77
CSPG4P11-201ENST00000560634 KRTAP19-6Q3LI70 58 aa3.98□□□□□ -1.77
CSPG4P11-201ENST00000560634 RNF213Q63HN8 5207 aa3.98□□□□□ -1.77
CSPG4P11-201ENST00000560634 FAT4Q6V0I7 4981 aa3.98□□□□□ -1.77
CSPG4P11-201ENST00000560634 MT4P47944 62 aa3.89□□□□□ -1.79
CSPG4P11-201ENST00000560634 LCE1BQ5T7P3 118 aa3.88□□□□□ -1.79
CSPG4P11-201ENST00000560634 LOC100996750A0A140TA64 210 aa3.88□□□□□ -1.79
CSPG4P11-201ENST00000560634 KRTAP9-6A0A140TA67 174 aa3.88□□□□□ -1.79
CSPG4P11-201ENST00000560634 MT1AP04731 61 aa3.87□□□□□ -1.79
CSPG4P11-201ENST00000560634 LCE1DQ5T752 114 aa3.86□□□□□ -1.79
CSPG4P11-201ENST00000560634 KRTAP4-3Q9BYR4 195 aa3.83□□□□□ -1.8
CSPG4P11-201ENST00000560634 KRTAP19-7Q3SYF9 63 aa3.82□□□□□ -1.8
CSPG4P11-201ENST00000560634 KRTAP2-3P0C7H8 128 aa3.8□□□□□ -1.8
CSPG4P11-201ENST00000560634 KRTAP2-4Q9BYR9 128 aa3.8□□□□□ -1.8
CSPG4P11-201ENST00000560634 KRTAP2-1Q9BYU5 128 aa3.8□□□□□ -1.8
CSPG4P11-201ENST00000560634 OBSCNQ5VST9 7968 aa3.73□□□□□ -1.81
CSPG4P11-201ENST00000560634 KRTAP9-6A8MVA2 160 aa3.69□□□□□ -1.82
CSPG4P11-201ENST00000560634 SYNE2Q8WXH0 6885 aaKnown RBP3.68□□□□□ -1.82
CSPG4P11-201ENST00000560634 KRTAP4-9Q9BYQ8 210 aa3.65□□□□□ -1.82
CSPG4P11-201ENST00000560634 KRTAP9-7A8MTY7 169 aa3.65□□□□□ -1.83
CSPG4P11-201ENST00000560634 LCE1AQ5T7P2 110 aa3.63□□□□□ -1.83
CSPG4P11-201ENST00000560634 LCE5AQ5TCM9 118 aa3.63□□□□□ -1.83
CSPG4P11-201ENST00000560634 KRTAP6-2Q3LI66 62 aa3.53□□□□□ -1.84
CSPG4P11-201ENST00000560634 KRTAP6-3Q3LI67 103 aa3.52□□□□□ -1.85
CSPG4P11-201ENST00000560634 KRTAP20-1Q3LI63 56 aa3.52□□□□□ -1.85
CSPG4P11-201ENST00000560634 KRTAP6-1Q3LI64 71 aa3.52□□□□□ -1.85
CSPG4P11-201ENST00000560634 KRTAP9-4Q9BYQ2 154 aa3.51□□□□□ -1.85
CSPG4P11-201ENST00000560634 MACF1Q9UPN3 7388 aaKnown RBP3.5□□□□□ -1.85
CSPG4P11-201ENST00000560634 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.46□□□□□ -1.86
CSPG4P11-201ENST00000560634 KMT2DO14686 5537 aa3.46□□□□□ -1.86
CSPG4P11-201ENST00000560634 DSTQ03001 7570 aaKnown RBP3.45□□□□□ -1.86
CSPG4P11-201ENST00000560634 LCE4AQ5TA78 99 aa3.45□□□□□ -1.86
CSPG4P11-201ENST00000560634 FCGBPQ9Y6R7 5405 aaPredicted RBP3.38□□□□□ -1.87
CSPG4P11-201ENST00000560634 USH2AO75445 5202 aa3.37□□□□□ -1.87
CSPG4P11-201ENST00000560634 LCE1CQ5T751 118 aa3.31□□□□□ -1.88
CSPG4P11-201ENST00000560634 LCE1EQ5T753 118 aa3.31□□□□□ -1.88
CSPG4P11-201ENST00000560634 LCE1FQ5T754 118 aa3.31□□□□□ -1.88
CSPG4P11-201ENST00000560634 KRTAP2-2Q9BYT5 123 aa3.31□□□□□ -1.88
CSPG4P11-201ENST00000560634 SSPOA2VEC9 5147 aa3.2□□□□□ -1.9
CSPG4P11-201ENST00000560634 GPR98Q8WXG9 6306 aa3.19□□□□□ -1.9
CSPG4P11-201ENST00000560634 MDN1Q9NU22 5596 aa3.15□□□□□ -1.91
CSPG4P11-201ENST00000560634 MUC19Q7Z5P9 8384 aa3.14□□□□□ -1.91
CSPG4P11-201ENST00000560634 KRTAP5-9P26371 169 aa3.11□□□□□ -1.91
CSPG4P11-201ENST00000560634 MUC12Q9UKN1 5478 aa3.06□□□□□ -1.92
CSPG4P11-201ENST00000560634 NEBP20929 6669 aa3.06□□□□□ -1.92
CSPG4P11-201ENST00000560634 KRTAP9-9Q9BYP9 154 aa3.01□□□□□ -1.93
CSPG4P11-201ENST00000560634 KRTAP4-11Q9BYQ6 195 aa2.93□□□□□ -1.94
CSPG4P11-201ENST00000560634 KRTAP5-5Q701N2 237 aaPredicted RBP2.85□□□□□ -1.95
CSPG4P11-201ENST00000560634 KRTAP4-6Q9BYQ5 205 aa2.82□□□□□ -1.96
CSPG4P11-201ENST00000560634 KRTAP20-2Q3LI61 65 aa2.81□□□□□ -1.96
CSPG4P11-201ENST00000560634 KRTAP5-4Q6L8H1 288 aa2.63□□□□□ -1.99
CSPG4P11-201ENST00000560634 KRTAP4-4Q9BYR3 166 aa2.61□□□□□ -1.99
CSPG4P11-201ENST00000560634 KRTAP4-12Q9BQ66 201 aa2.55□□□□□ -2
CSPG4P11-201ENST00000560634 KRTAP4-2Q9BYR5 136 aa2.55□□□□□ -2
CSPG4P11-201ENST00000560634 MUC5ACP98088 5654 aa2.44□□□□□ -2.02
CSPG4P11-201ENST00000560634 HMCN1Q96RW7 5635 aa2.39□□□□□ -2.03
CSPG4P11-201ENST00000560634 AHNAK2Q8IVF2 5795 aa2.37□□□□□ -2.03
CSPG4P11-201ENST00000560634 KRTAP5-3Q6L8H2 238 aa2.36□□□□□ -2.03
CSPG4P11-201ENST00000560634 KRTAP5-2Q701N4 177 aa2.17□□□□□ -2.06
CSPG4P11-201ENST00000560634 KRTAP5-8O75690 187 aa2.14□□□□□ -2.07
CSPG4P11-201ENST00000560634 KRTAP5-10Q6L8G5 202 aa2.12□□□□□ -2.07
CSPG4P11-201ENST00000560634 AHNAKQ09666 5890 aaKnown RBP2.02□□□□□ -2.09
CSPG4P11-201ENST00000560634 MUC5BQ9HC84 5762 aaPredicted RBP1.95□□□□□ -2.1
CSPG4P11-201ENST00000560634 PHGR1C9JFL3 82 aa1.91□□□□□ -2.1
CSPG4P11-201ENST00000560634 KRTAP5-1Q6L8H4 278 aa1.9□□□□□ -2.11
CSPG4P11-201ENST00000560634 KRTAP5-11Q6L8G4 156 aa1.89□□□□□ -2.11
CSPG4P11-201ENST00000560634 KRTAP21-2Q3LI59 83 aa1.79□□□□□ -2.12
CSPG4P11-201ENST00000560634 KRTAP21-1Q3LI58 79 aa1.78□□□□□ -2.12
CSPG4P11-201ENST00000560634 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.74□□□□□ -2.13
CSPG4P11-201ENST00000560634 KRTAP5-7Q6L8G8 165 aa1.66□□□□□ -2.14
CSPG4P11-201ENST00000560634 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 45.6 ms