RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 FSIP2Q5CZC0 6907 aa4.19□□□□□ -1.74
TRAF3-208ENST00000560371 KRTAP9-6A0A140TA67 174 aa4.18□□□□□ -1.74
TRAF3-208ENST00000560371 MUC17Q685J3 4493 aa4.15□□□□□ -1.74
TRAF3-208ENST00000560371 HERC1Q15751 4861 aa4.15□□□□□ -1.74
TRAF3-208ENST00000560371 LCE2AQ5TA79 106 aaPredicted RBP4.15□□□□□ -1.75
TRAF3-208ENST00000560371 BIRC6Q9NR09 4857 aa4.12□□□□□ -1.75
TRAF3-208ENST00000560371 PRM1P04553 51 aa4.11□□□□□ -1.75
TRAF3-208ENST00000560371 LOC100996750A0A140TA64 210 aa4.1□□□□□ -1.75
TRAF3-208ENST00000560371 KRTAP4-3Q9BYR4 195 aa4.09□□□□□ -1.75
TRAF3-208ENST00000560371 EPPK1P58107 5090 aaKnown RBP4.06□□□□□ -1.76
TRAF3-208ENST00000560371 SYNE2Q8WXH0 6885 aaKnown RBP4.04□□□□□ -1.76
TRAF3-208ENST00000560371 LCE5AQ5TCM9 118 aa4.03□□□□□ -1.76
TRAF3-208ENST00000560371 KRTAP9-7A8MTY7 169 aa3.99□□□□□ -1.77
TRAF3-208ENST00000560371 HMCN2Q8NDA2 5059 aa3.98□□□□□ -1.77
TRAF3-208ENST00000560371 KRTAP20-1Q3LI63 56 aa3.98□□□□□ -1.77
TRAF3-208ENST00000560371 KRTAP19-7Q3SYF9 63 aa3.98□□□□□ -1.77
TRAF3-208ENST00000560371 MT1AP04731 61 aa3.89□□□□□ -1.79
TRAF3-208ENST00000560371 LCE1AQ5T7P2 110 aa3.87□□□□□ -1.79
TRAF3-208ENST00000560371 LCE1CQ5T751 118 aa3.86□□□□□ -1.79
TRAF3-208ENST00000560371 LCE1EQ5T753 118 aa3.86□□□□□ -1.79
TRAF3-208ENST00000560371 LCE1FQ5T754 118 aa3.86□□□□□ -1.79
TRAF3-208ENST00000560371 UBR4Q5T4S7 5183 aa3.85□□□□□ -1.79
TRAF3-208ENST00000560371 KRTAP2-3P0C7H8 128 aa3.85□□□□□ -1.79
TRAF3-208ENST00000560371 KRTAP2-4Q9BYR9 128 aa3.85□□□□□ -1.79
TRAF3-208ENST00000560371 KRTAP2-1Q9BYU5 128 aa3.85□□□□□ -1.79
TRAF3-208ENST00000560371 KRTAP6-3Q3LI67 103 aa3.85□□□□□ -1.79
TRAF3-208ENST00000560371 MUC2Q02817 5179 aa3.83□□□□□ -1.8
TRAF3-208ENST00000560371 FAT4Q6V0I7 4981 aa3.81□□□□□ -1.8
TRAF3-208ENST00000560371 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.8□□□□□ -1.8
TRAF3-208ENST00000560371 KRTAP4-9Q9BYQ8 210 aa3.78□□□□□ -1.8
TRAF3-208ENST00000560371 RNF213Q63HN8 5207 aa3.72□□□□□ -1.81
TRAF3-208ENST00000560371 LCE4AQ5TA78 99 aa3.71□□□□□ -1.82
TRAF3-208ENST00000560371 OBSCNQ5VST9 7968 aa3.7□□□□□ -1.82
TRAF3-208ENST00000560371 KRTAP2-2Q9BYT5 123 aa3.7□□□□□ -1.82
TRAF3-208ENST00000560371 KRTAP6-2Q3LI66 62 aa3.69□□□□□ -1.82
TRAF3-208ENST00000560371 ABCA13Q86UQ4 5058 aa3.69□□□□□ -1.82
TRAF3-208ENST00000560371 KRTAP6-1Q3LI64 71 aa3.66□□□□□ -1.82
TRAF3-208ENST00000560371 KRTAP9-4Q9BYQ2 154 aa3.61□□□□□ -1.83
TRAF3-208ENST00000560371 DSTQ03001 7570 aaKnown RBP3.59□□□□□ -1.83
TRAF3-208ENST00000560371 KRTAP9-6A8MVA2 160 aa3.54□□□□□ -1.84
TRAF3-208ENST00000560371 FCGBPQ9Y6R7 5405 aaPredicted RBP3.44□□□□□ -1.86
TRAF3-208ENST00000560371 MACF1Q9UPN3 7388 aaKnown RBP3.37□□□□□ -1.87
TRAF3-208ENST00000560371 KRTAP9-9Q9BYP9 154 aa3.33□□□□□ -1.88
TRAF3-208ENST00000560371 KMT2DO14686 5537 aa3.32□□□□□ -1.88
TRAF3-208ENST00000560371 KRTAP5-9P26371 169 aa3.24□□□□□ -1.89
TRAF3-208ENST00000560371 USH2AO75445 5202 aa3.2□□□□□ -1.9
TRAF3-208ENST00000560371 KRTAP4-6Q9BYQ5 205 aa3.15□□□□□ -1.9
TRAF3-208ENST00000560371 KRTAP20-2Q3LI61 65 aa3.13□□□□□ -1.91
TRAF3-208ENST00000560371 NEBP20929 6669 aa3.09□□□□□ -1.91
TRAF3-208ENST00000560371 KRTAP4-11Q9BYQ6 195 aa3.07□□□□□ -1.92
TRAF3-208ENST00000560371 MUC12Q9UKN1 5478 aa3.02□□□□□ -1.93
TRAF3-208ENST00000560371 MUC19Q7Z5P9 8384 aa2.98□□□□□ -1.93
TRAF3-208ENST00000560371 KRTAP4-4Q9BYR3 166 aa2.95□□□□□ -1.94
TRAF3-208ENST00000560371 SSPOA2VEC9 5147 aa2.92□□□□□ -1.94
TRAF3-208ENST00000560371 KRTAP4-12Q9BQ66 201 aa2.9□□□□□ -1.94
TRAF3-208ENST00000560371 KRTAP4-2Q9BYR5 136 aa2.9□□□□□ -1.94
TRAF3-208ENST00000560371 MDN1Q9NU22 5596 aa2.88□□□□□ -1.95
TRAF3-208ENST00000560371 KRTAP5-4Q6L8H1 288 aa2.84□□□□□ -1.95
TRAF3-208ENST00000560371 GPR98Q8WXG9 6306 aa2.76□□□□□ -1.97
TRAF3-208ENST00000560371 KRTAP5-5Q701N2 237 aaPredicted RBP2.62□□□□□ -1.99
TRAF3-208ENST00000560371 KRTAP5-3Q6L8H2 238 aa2.56□□□□□ -2
TRAF3-208ENST00000560371 MUC5ACP98088 5654 aa2.51□□□□□ -2.01
TRAF3-208ENST00000560371 KRTAP5-8O75690 187 aa2.33□□□□□ -2.04
TRAF3-208ENST00000560371 HMCN1Q96RW7 5635 aa2.25□□□□□ -2.05
TRAF3-208ENST00000560371 PHGR1C9JFL3 82 aa2.23□□□□□ -2.05
TRAF3-208ENST00000560371 KRTAP5-2Q701N4 177 aa2.16□□□□□ -2.06
TRAF3-208ENST00000560371 KRTAP5-10Q6L8G5 202 aa2.13□□□□□ -2.07
TRAF3-208ENST00000560371 AHNAK2Q8IVF2 5795 aa2.09□□□□□ -2.07
TRAF3-208ENST00000560371 MUC5BQ9HC84 5762 aaPredicted RBP2.04□□□□□ -2.08
TRAF3-208ENST00000560371 KRTAP5-11Q6L8G4 156 aa1.99□□□□□ -2.09
TRAF3-208ENST00000560371 AHNAKQ09666 5890 aaKnown RBP1.95□□□□□ -2.1
TRAF3-208ENST00000560371 KRTAP5-1Q6L8H4 278 aa1.91□□□□□ -2.1
TRAF3-208ENST00000560371 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
TRAF3-208ENST00000560371 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.7□□□□□ -2.14
TRAF3-208ENST00000560371 KRTAP5-7Q6L8G8 165 aa1.67□□□□□ -2.14
TRAF3-208ENST00000560371 KRTAP21-1Q3LI58 79 aa1.55□□□□□ -2.16
TRAF3-208ENST00000560371 MUC16Q8WXI7 14507 aa1.34□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 5.9 ms