RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 HMCN2Q8NDA2 5059 aa3.62□□□□□ -1.83
SYNE2-208ENST00000553289 MT1MQ8N339 61 aa3.62□□□□□ -1.83
SYNE2-208ENST00000553289 KRTAP19-6Q3LI70 58 aa3.61□□□□□ -1.83
SYNE2-208ENST00000553289 MT3P25713 68 aa3.59□□□□□ -1.83
SYNE2-208ENST00000553289 UBR4Q5T4S7 5183 aa3.56□□□□□ -1.84
SYNE2-208ENST00000553289 LCE2AQ5TA79 106 aaPredicted RBP3.54□□□□□ -1.84
SYNE2-208ENST00000553289 MUC2Q02817 5179 aa3.48□□□□□ -1.85
SYNE2-208ENST00000553289 PRM1P04553 51 aa3.44□□□□□ -1.86
SYNE2-208ENST00000553289 KRTAP19-7Q3SYF9 63 aa3.43□□□□□ -1.86
SYNE2-208ENST00000553289 LOC100996750A0A140TA64 210 aa3.42□□□□□ -1.86
SYNE2-208ENST00000553289 MT1AP04731 61 aa3.42□□□□□ -1.86
SYNE2-208ENST00000553289 FSIP2Q5CZC0 6907 aa3.4□□□□□ -1.87
SYNE2-208ENST00000553289 KRTAP4-3Q9BYR4 195 aa3.39□□□□□ -1.87
SYNE2-208ENST00000553289 MT4P47944 62 aa3.39□□□□□ -1.87
SYNE2-208ENST00000553289 KRTAP9-2Q9BYQ4 174 aa3.38□□□□□ -1.87
SYNE2-208ENST00000553289 KRTAP2-3P0C7H8 128 aa3.37□□□□□ -1.87
SYNE2-208ENST00000553289 KRTAP2-4Q9BYR9 128 aa3.37□□□□□ -1.87
SYNE2-208ENST00000553289 KRTAP2-1Q9BYU5 128 aa3.37□□□□□ -1.87
SYNE2-208ENST00000553289 LCE1DQ5T752 114 aa3.29□□□□□ -1.88
SYNE2-208ENST00000553289 LCE1BQ5T7P3 118 aa3.29□□□□□ -1.88
SYNE2-208ENST00000553289 SYNE1Q8NF91 8797 aaKnown RBP3.26□□□□□ -1.89
SYNE2-208ENST00000553289 LCE1AQ5T7P2 110 aa3.26□□□□□ -1.89
SYNE2-208ENST00000553289 KRTAP9-6A0A140TA67 174 aa3.18□□□□□ -1.9
SYNE2-208ENST00000553289 KRTAP4-9Q9BYQ8 210 aa3.17□□□□□ -1.9
SYNE2-208ENST00000553289 KRTAP6-3Q3LI67 103 aa3.14□□□□□ -1.91
SYNE2-208ENST00000553289 LCE5AQ5TCM9 118 aa3.13□□□□□ -1.91
SYNE2-208ENST00000553289 KRTAP9-4Q9BYQ2 154 aa3.13□□□□□ -1.91
SYNE2-208ENST00000553289 USH2AO75445 5202 aa3.12□□□□□ -1.91
SYNE2-208ENST00000553289 KRTAP6-1Q3LI64 71 aa3.12□□□□□ -1.91
SYNE2-208ENST00000553289 KRTAP9-6A8MVA2 160 aa3.11□□□□□ -1.91
SYNE2-208ENST00000553289 KRTAP20-1Q3LI63 56 aa3.1□□□□□ -1.91
SYNE2-208ENST00000553289 LCE4AQ5TA78 99 aa3.09□□□□□ -1.92
SYNE2-208ENST00000553289 KRTAP6-2Q3LI66 62 aa3.07□□□□□ -1.92
SYNE2-208ENST00000553289 KRTAP9-7A8MTY7 169 aa3.02□□□□□ -1.93
SYNE2-208ENST00000553289 OBSCNQ5VST9 7968 aa3.01□□□□□ -1.93
SYNE2-208ENST00000553289 KRTAP2-2Q9BYT5 123 aa2.95□□□□□ -1.94
SYNE2-208ENST00000553289 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.95□□□□□ -1.94
SYNE2-208ENST00000553289 KMT2DO14686 5537 aa2.93□□□□□ -1.94
SYNE2-208ENST00000553289 SYNE2Q8WXH0 6885 aaKnown RBP2.93□□□□□ -1.94
SYNE2-208ENST00000553289 SSPOA2VEC9 5147 aa2.88□□□□□ -1.95
SYNE2-208ENST00000553289 FCGBPQ9Y6R7 5405 aaPredicted RBP2.88□□□□□ -1.95
SYNE2-208ENST00000553289 DSTQ03001 7570 aaKnown RBP2.82□□□□□ -1.96
SYNE2-208ENST00000553289 MACF1Q9UPN3 7388 aaKnown RBP2.81□□□□□ -1.96
SYNE2-208ENST00000553289 LCE1CQ5T751 118 aa2.78□□□□□ -1.96
SYNE2-208ENST00000553289 LCE1EQ5T753 118 aa2.78□□□□□ -1.96
SYNE2-208ENST00000553289 LCE1FQ5T754 118 aa2.78□□□□□ -1.96
SYNE2-208ENST00000553289 MUC12Q9UKN1 5478 aa2.77□□□□□ -1.97
SYNE2-208ENST00000553289 KRTAP5-9P26371 169 aa2.75□□□□□ -1.97
SYNE2-208ENST00000553289 KRTAP9-9Q9BYP9 154 aa2.62□□□□□ -1.99
SYNE2-208ENST00000553289 NEBP20929 6669 aa2.57□□□□□ -2
SYNE2-208ENST00000553289 MDN1Q9NU22 5596 aa2.56□□□□□ -2
SYNE2-208ENST00000553289 KRTAP20-2Q3LI61 65 aa2.55□□□□□ -2
SYNE2-208ENST00000553289 KRTAP4-6Q9BYQ5 205 aa2.5□□□□□ -2.01
SYNE2-208ENST00000553289 KRTAP4-11Q9BYQ6 195 aa2.49□□□□□ -2.01
SYNE2-208ENST00000553289 KRTAP5-4Q6L8H1 288 aa2.4□□□□□ -2.03
SYNE2-208ENST00000553289 KRTAP5-5Q701N2 237 aaPredicted RBP2.38□□□□□ -2.03
SYNE2-208ENST00000553289 MUC19Q7Z5P9 8384 aa2.35□□□□□ -2.03
SYNE2-208ENST00000553289 GPR98Q8WXG9 6306 aa2.31□□□□□ -2.04
SYNE2-208ENST00000553289 KRTAP4-4Q9BYR3 166 aa2.24□□□□□ -2.05
SYNE2-208ENST00000553289 KRTAP4-12Q9BQ66 201 aa2.19□□□□□ -2.06
SYNE2-208ENST00000553289 KRTAP4-2Q9BYR5 136 aa2.19□□□□□ -2.06
SYNE2-208ENST00000553289 KRTAP5-3Q6L8H2 238 aa2.09□□□□□ -2.07
SYNE2-208ENST00000553289 MUC5ACP98088 5654 aa2.06□□□□□ -2.08
SYNE2-208ENST00000553289 HMCN1Q96RW7 5635 aa2.01□□□□□ -2.09
SYNE2-208ENST00000553289 KRTAP5-2Q701N4 177 aa1.99□□□□□ -2.09
SYNE2-208ENST00000553289 AHNAK2Q8IVF2 5795 aa1.9□□□□□ -2.11
SYNE2-208ENST00000553289 KRTAP5-10Q6L8G5 202 aa1.9□□□□□ -2.11
SYNE2-208ENST00000553289 KRTAP5-8O75690 187 aa1.84□□□□□ -2.11
SYNE2-208ENST00000553289 KRTAP5-11Q6L8G4 156 aa1.73□□□□□ -2.13
SYNE2-208ENST00000553289 KRTAP5-1Q6L8H4 278 aa1.73□□□□□ -2.13
SYNE2-208ENST00000553289 MUC5BQ9HC84 5762 aaPredicted RBP1.72□□□□□ -2.13
SYNE2-208ENST00000553289 PHGR1C9JFL3 82 aa1.65□□□□□ -2.15
SYNE2-208ENST00000553289 KRTAP21-2Q3LI59 83 aa1.61□□□□□ -2.15
SYNE2-208ENST00000553289 AHNAKQ09666 5890 aaKnown RBP1.6□□□□□ -2.15
SYNE2-208ENST00000553289 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.58□□□□□ -2.16
SYNE2-208ENST00000553289 KRTAP21-1Q3LI58 79 aa1.51□□□□□ -2.17
SYNE2-208ENST00000553289 KRTAP5-7Q6L8G8 165 aa1.49□□□□□ -2.17
SYNE2-208ENST00000553289 MUC16Q8WXI7 14507 aa1□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 8.1 ms