RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 DCAF8L2P0C7V8 631 aa19.69■□□□□ 0.74
SYNE2-208ENST00000553289 NISCHQ9Y2I1 1504 aa19.14■□□□□ 0.65
SYNE2-208ENST00000553289 SUPT5HO00267 1087 aaKnown RBP18.84■□□□□ 0.61
SYNE2-208ENST00000553289 SHROOM4Q9ULL8 1493 aa18.44■□□□□ 0.54
SYNE2-208ENST00000553289 PELP1Q8IZL8 1130 aaKnown RBP18.24■□□□□ 0.51
SYNE2-208ENST00000553289 APLP2Q06481 763 aa18.09■□□□□ 0.49
SYNE2-208ENST00000553289 EHMT2Q96KQ7 1210 aa18.02■□□□□ 0.48
SYNE2-208ENST00000553289 FAM9AQ8IZU1 332 aaPredicted RBP17.82■□□□□ 0.44
SYNE2-208ENST00000553289 ZEB1P37275 1124 aaPredicted RBP17.71■□□□□ 0.43
SYNE2-208ENST00000553289 PCGF6Q9BYE7 350 aa17.67■□□□□ 0.42
SYNE2-208ENST00000553289 CENPBP07199 599 aaPredicted RBP17.58■□□□□ 0.4
SYNE2-208ENST00000553289 TRIM41Q8WV44 630 aa17.57■□□□□ 0.4
SYNE2-208ENST00000553289 TTBK1Q5TCY1 1321 aaPredicted RBP17.48■□□□□ 0.39
SYNE2-208ENST00000553289 CCER1Q8TC90 406 aaPredicted RBP17.45■□□□□ 0.38
SYNE2-208ENST00000553289 UBTFP17480 764 aaKnown RBP17.33■□□□□ 0.36
SYNE2-208ENST00000553289 ERICH6Q7L0X2 663 aa17.33■□□□□ 0.36
SYNE2-208ENST00000553289 RANGAP1P46060 587 aaPredicted RBP17.3■□□□□ 0.36
SYNE2-208ENST00000553289 ATP1B4Q9UN42 357 aaPredicted RBP17.24■□□□□ 0.35
SYNE2-208ENST00000553289 NEFLP07196 543 aa17.17■□□□□ 0.34
SYNE2-208ENST00000553289 TRIM26Q12899 539 aaPredicted RBP17.1■□□□□ 0.33
SYNE2-208ENST00000553289 MYT1Q01538 1121 aa17.09■□□□□ 0.33
SYNE2-208ENST00000553289 YTHDC1Q96MU7 727 aaKnown RBP16.94■□□□□ 0.3
SYNE2-208ENST00000553289 HRCP23327 699 aa16.89■□□□□ 0.29
SYNE2-208ENST00000553289 PPARGC1BQ86YN6 1023 aaKnown RBP16.83■□□□□ 0.29
SYNE2-208ENST00000553289 CHIC1Q5VXU3 224 aa16.82■□□□□ 0.28
SYNE2-208ENST00000553289 LOC105371045A0A1W2PR82 267 aa16.68■□□□□ 0.26
SYNE2-208ENST00000553289 ITGAEP38570 1179 aa16.68■□□□□ 0.26
SYNE2-208ENST00000553289 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.66■□□□□ 0.26
SYNE2-208ENST00000553289 HNRNPUL2Q1KMD3 747 aaKnown RBP16.66■□□□□ 0.26
SYNE2-208ENST00000553289 DAXXQ9UER7 740 aaPredicted RBP16.64■□□□□ 0.25
SYNE2-208ENST00000553289 MYT1LQ9UL68 1186 aa16.58■□□□□ 0.25
SYNE2-208ENST00000553289 POLR3GLQ9BT43 218 aa16.55■□□□□ 0.24
SYNE2-208ENST00000553289 DIEXFQ68CQ4 756 aaKnown RBP16.45■□□□□ 0.22
SYNE2-208ENST00000553289 FAM50AQ14320 339 aaKnown RBP16.35■□□□□ 0.21
SYNE2-208ENST00000553289 RTL5Q5HYW3 569 aaPredicted RBP16.27■□□□□ 0.2
SYNE2-208ENST00000553289 ABCC9O60706 1549 aa16.27■□□□□ 0.2
SYNE2-208ENST00000553289 CNGB1Q14028 1251 aaPredicted RBP16.27■□□□□ 0.19
SYNE2-208ENST00000553289 TRIM52Q96A61 297 aa16.27■□□□□ 0.19
SYNE2-208ENST00000553289 SLC4A1APQ9BWU0 796 aaKnown RBP16.24■□□□□ 0.19
SYNE2-208ENST00000553289 ZNF316A6NFI3 1004 aaPredicted RBP16.24■□□□□ 0.19
SYNE2-208ENST00000553289 CLSPNQ9HAW4 1339 aa16.22■□□□□ 0.19
SYNE2-208ENST00000553289 PABPN1Q86U42 306 aaKnown RBP eCLIP16.19■□□□□ 0.18
SYNE2-208ENST00000553289 ANP32CO43423 234 aa16.19■□□□□ 0.18
SYNE2-208ENST00000553289 NEUROD1Q13562 356 aa16.17■□□□□ 0.18
SYNE2-208ENST00000553289 CSRNP3Q8WYN3 585 aa16.07■□□□□ 0.16
SYNE2-208ENST00000553289 CDK11AQ9UQ88 783 aaPredicted RBP16.06■□□□□ 0.16
SYNE2-208ENST00000553289 GTF3C3Q9Y5Q9 886 aa16.05■□□□□ 0.16
SYNE2-208ENST00000553289 ZNF326Q5BKZ1 582 aaKnown RBP16■□□□□ 0.15
SYNE2-208ENST00000553289 ZBTB47Q9UFB7 747 aaPredicted RBP15.99■□□□□ 0.15
SYNE2-208ENST00000553289 BCANQ96GW7 911 aa15.95■□□□□ 0.14
SYNE2-208ENST00000553289 FBLN2P98095 1184 aa15.91■□□□□ 0.14
SYNE2-208ENST00000553289 ACIN1Q9UKV3 1341 aaKnown RBP15.9■□□□□ 0.14
SYNE2-208ENST00000553289 NEFMP07197 916 aa15.89■□□□□ 0.13
SYNE2-208ENST00000553289 DCAF1Q9Y4B6 1507 aa15.89■□□□□ 0.13
SYNE2-208ENST00000553289 CANXP27824 592 aaKnown RBP15.88■□□□□ 0.13
SYNE2-208ENST00000553289 ZCCHC6Q5VYS8 1495 aaKnown RBP15.86■□□□□ 0.13
SYNE2-208ENST00000553289 P3H3Q8IVL6 736 aa15.84■□□□□ 0.13
SYNE2-208ENST00000553289 ANP32AP39687 249 aaKnown RBP15.8■□□□□ 0.12
SYNE2-208ENST00000553289 SCRIBQ14160 1630 aa15.8■□□□□ 0.12
SYNE2-208ENST00000553289 TONSLQ96HA7 1378 aa15.79■□□□□ 0.12
SYNE2-208ENST00000553289 ZNF777Q9ULD5 760 aaPredicted RBP15.75■□□□□ 0.11
SYNE2-208ENST00000553289 CCDC180Q9P1Z9 1646 aa15.73■□□□□ 0.11
SYNE2-208ENST00000553289 ARID3CA6NKF2 412 aa15.7■□□□□ 0.1
SYNE2-208ENST00000553289 SLC24A1O60721 1099 aa15.65■□□□□ 0.1
SYNE2-208ENST00000553289 FKBP8Q14318 412 aa15.62■□□□□ 0.09
SYNE2-208ENST00000553289 HNRNPUQ00839 825 aaKnown RBP eCLIP15.61■□□□□ 0.09
SYNE2-208ENST00000553289 ESF1Q9H501 851 aaKnown RBP15.59■□□□□ 0.09
SYNE2-208ENST00000553289 UPF2Q9HAU5 1272 aaKnown RBP15.59■□□□□ 0.09
SYNE2-208ENST00000553289 DDX10Q13206 875 aaKnown RBP15.58■□□□□ 0.08
SYNE2-208ENST00000553289 EEA1Q15075 1411 aa15.57■□□□□ 0.08
SYNE2-208ENST00000553289 NPM2Q86SE8 214 aaKnown RBP15.55■□□□□ 0.08
SYNE2-208ENST00000553289 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.55■□□□□ 0.08
SYNE2-208ENST00000553289 ANP32BQ92688 251 aaKnown RBP15.55■□□□□ 0.08
SYNE2-208ENST00000553289 NPM1P06748 294 aaKnown RBP eCLIP15.53■□□□□ 0.08
SYNE2-208ENST00000553289 MTUS2Q5JR59 1369 aa15.53■□□□□ 0.08
SYNE2-208ENST00000553289 BCL11AQ9H165 835 aa15.53■□□□□ 0.08
SYNE2-208ENST00000553289 CLIP1P30622 1438 aa15.53■□□□□ 0.08
SYNE2-208ENST00000553289 FAM9BQ8IZU0 186 aa15.53■□□□□ 0.08
SYNE2-208ENST00000553289 TMC1Q8TDI8 760 aa15.52■□□□□ 0.08
SYNE2-208ENST00000553289 STAG3Q9UJ98 1225 aa15.52■□□□□ 0.08
SYNE2-208ENST00000553289 TSPY4P0CV99 314 aa15.51■□□□□ 0.07
SYNE2-208ENST00000553289 TSPY10P0CW01 314 aa15.51■□□□□ 0.07
SYNE2-208ENST00000553289 CHGAP10645 457 aaKnown RBP15.51■□□□□ 0.07
SYNE2-208ENST00000553289 HSP90AA1P07900 732 aaKnown RBP15.5■□□□□ 0.07
SYNE2-208ENST00000553289 CCDC136Q96JN2 1154 aa15.47■□□□□ 0.07
SYNE2-208ENST00000553289 CHIC2Q9UKJ5 165 aa15.46■□□□□ 0.07
SYNE2-208ENST00000553289 GOLGA3Q08378 1498 aa15.46■□□□□ 0.07
SYNE2-208ENST00000553289 WDR43Q15061 677 aaKnown RBP eCLIP15.46■□□□□ 0.07
SYNE2-208ENST00000553289 RSF1Q96T23 1441 aaPredicted RBP15.45■□□□□ 0.06
SYNE2-208ENST00000553289 MRS2Q9HD23 443 aa15.45■□□□□ 0.06
SYNE2-208ENST00000553289 RB1CC1Q8TDY2 1594 aa15.43■□□□□ 0.06
SYNE2-208ENST00000553289 EIF4G2P78344 907 aaKnown RBP eCLIP15.41■□□□□ 0.06
SYNE2-208ENST00000553289 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.4■□□□□ 0.06
SYNE2-208ENST00000553289 CEP162Q5TB80 1403 aa15.38■□□□□ 0.05
SYNE2-208ENST00000553289 CHMP7Q8WUX9 453 aaPredicted RBP15.36■□□□□ 0.05
SYNE2-208ENST00000553289 SALL2Q9Y467 1007 aaPredicted RBP15.35■□□□□ 0.05
SYNE2-208ENST00000553289 MIER1Q8N108 512 aa15.35■□□□□ 0.05
SYNE2-208ENST00000553289 KDM2AQ9Y2K7 1162 aa15.33■□□□□ 0.05
SYNE2-208ENST00000553289 WRNQ14191 1432 aaPredicted RBP eCLIP15.32■□□□□ 0.04
SYNE2-208ENST00000553289 TNIKQ9UKE5 1360 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms