RNA–Protein interactions for RNA: ENST00000538291.5

SCARB1-205, Transcript of scavenger receptor class B member 1, humanhuman

TSL 5

Gene SCARB1, Length 5,527 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-205ENST00000538291 SYNE1Q8NF91 8797 aaKnown RBP5.12□□□□□ -1.59
SCARB1-205ENST00000538291 LCE1BQ5T7P3 118 aa5.1□□□□□ -1.59
SCARB1-205ENST00000538291 KMT2CQ8NEZ4 4911 aaKnown RBP5.09□□□□□ -1.59
SCARB1-205ENST00000538291 LCE1DQ5T752 114 aa5.07□□□□□ -1.6
SCARB1-205ENST00000538291 FLGP20930 4061 aaPredicted RBP5.07□□□□□ -1.6
SCARB1-205ENST00000538291 LOC100996750A0A140TA64 210 aa5.06□□□□□ -1.6
SCARB1-205ENST00000538291 LCE2AQ5TA79 106 aaPredicted RBP5.06□□□□□ -1.6
SCARB1-205ENST00000538291 PRM1P04553 51 aa5.03□□□□□ -1.6
SCARB1-205ENST00000538291 KRTAP4-3Q9BYR4 195 aa5.03□□□□□ -1.6
SCARB1-205ENST00000538291 LPAP08519 4548 aa5.03□□□□□ -1.6
SCARB1-205ENST00000538291 ABCA13Q86UQ4 5058 aa5.03□□□□□ -1.6
SCARB1-205ENST00000538291 MT1AP04731 61 aa4.94□□□□□ -1.62
SCARB1-205ENST00000538291 KRTAP19-7Q3SYF9 63 aa4.88□□□□□ -1.63
SCARB1-205ENST00000538291 KRTAP20-1Q3LI63 56 aa4.87□□□□□ -1.63
SCARB1-205ENST00000538291 UBR4Q5T4S7 5183 aa4.83□□□□□ -1.64
SCARB1-205ENST00000538291 RNF213Q63HN8 5207 aa4.83□□□□□ -1.64
SCARB1-205ENST00000538291 KRTAP9-7A8MTY7 169 aa4.82□□□□□ -1.64
SCARB1-205ENST00000538291 LCE5AQ5TCM9 118 aa4.8□□□□□ -1.64
SCARB1-205ENST00000538291 FSIP2Q5CZC0 6907 aa4.8□□□□□ -1.64
SCARB1-205ENST00000538291 KRTAP2-3P0C7H8 128 aa4.78□□□□□ -1.64
SCARB1-205ENST00000538291 KRTAP2-4Q9BYR9 128 aa4.78□□□□□ -1.64
SCARB1-205ENST00000538291 KRTAP2-1Q9BYU5 128 aa4.78□□□□□ -1.64
SCARB1-205ENST00000538291 FAT4Q6V0I7 4981 aa4.75□□□□□ -1.65
SCARB1-205ENST00000538291 LCE1AQ5T7P2 110 aa4.74□□□□□ -1.65
SCARB1-205ENST00000538291 KRTAP6-3Q3LI67 103 aa4.73□□□□□ -1.65
SCARB1-205ENST00000538291 SYNE2Q8WXH0 6885 aaKnown RBP4.73□□□□□ -1.65
SCARB1-205ENST00000538291 KRTAP4-9Q9BYQ8 210 aa4.7□□□□□ -1.66
SCARB1-205ENST00000538291 MUC2Q02817 5179 aa4.68□□□□□ -1.66
SCARB1-205ENST00000538291 OBSCNQ5VST9 7968 aa4.61□□□□□ -1.67
SCARB1-205ENST00000538291 HMCN2Q8NDA2 5059 aa4.6□□□□□ -1.67
SCARB1-205ENST00000538291 LCE4AQ5TA78 99 aa4.58□□□□□ -1.68
SCARB1-205ENST00000538291 KRTAP6-2Q3LI66 62 aa4.56□□□□□ -1.68
SCARB1-205ENST00000538291 KRTAP6-1Q3LI64 71 aa4.54□□□□□ -1.68
SCARB1-205ENST00000538291 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.53□□□□□ -1.68
SCARB1-205ENST00000538291 KRTAP9-4Q9BYQ2 154 aa4.53□□□□□ -1.68
SCARB1-205ENST00000538291 KRTAP2-2Q9BYT5 123 aa4.51□□□□□ -1.69
SCARB1-205ENST00000538291 LCE1CQ5T751 118 aa4.41□□□□□ -1.7
SCARB1-205ENST00000538291 LCE1EQ5T753 118 aa4.41□□□□□ -1.7
SCARB1-205ENST00000538291 LCE1FQ5T754 118 aa4.41□□□□□ -1.7
SCARB1-205ENST00000538291 KRTAP9-6A8MVA2 160 aa4.35□□□□□ -1.71
SCARB1-205ENST00000538291 USH2AO75445 5202 aa4.13□□□□□ -1.75
SCARB1-205ENST00000538291 KRTAP9-9Q9BYP9 154 aa4.08□□□□□ -1.76
SCARB1-205ENST00000538291 DSTQ03001 7570 aaKnown RBP4.04□□□□□ -1.76
SCARB1-205ENST00000538291 KRTAP5-9P26371 169 aa4.04□□□□□ -1.76
SCARB1-205ENST00000538291 MACF1Q9UPN3 7388 aaKnown RBP4.03□□□□□ -1.76
SCARB1-205ENST00000538291 FCGBPQ9Y6R7 5405 aaPredicted RBP4.02□□□□□ -1.77
SCARB1-205ENST00000538291 NEBP20929 6669 aa3.95□□□□□ -1.78
SCARB1-205ENST00000538291 GPR98Q8WXG9 6306 aa3.87□□□□□ -1.79
SCARB1-205ENST00000538291 KMT2DO14686 5537 aa3.8□□□□□ -1.8
SCARB1-205ENST00000538291 SSPOA2VEC9 5147 aa3.78□□□□□ -1.8
SCARB1-205ENST00000538291 KRTAP4-6Q9BYQ5 205 aa3.77□□□□□ -1.81
SCARB1-205ENST00000538291 MUC19Q7Z5P9 8384 aa3.76□□□□□ -1.81
SCARB1-205ENST00000538291 KRTAP20-2Q3LI61 65 aa3.75□□□□□ -1.81
SCARB1-205ENST00000538291 KRTAP4-11Q9BYQ6 195 aa3.69□□□□□ -1.82
SCARB1-205ENST00000538291 MDN1Q9NU22 5596 aa3.68□□□□□ -1.82
SCARB1-205ENST00000538291 KRTAP5-4Q6L8H1 288 aa3.57□□□□□ -1.84
SCARB1-205ENST00000538291 MUC12Q9UKN1 5478 aa3.57□□□□□ -1.84
SCARB1-205ENST00000538291 KRTAP4-4Q9BYR3 166 aa3.47□□□□□ -1.85
SCARB1-205ENST00000538291 KRTAP4-12Q9BQ66 201 aa3.46□□□□□ -1.86
SCARB1-205ENST00000538291 KRTAP4-2Q9BYR5 136 aa3.46□□□□□ -1.86
SCARB1-205ENST00000538291 KRTAP5-5Q701N2 237 aaPredicted RBP3.3□□□□□ -1.88
SCARB1-205ENST00000538291 AHNAK2Q8IVF2 5795 aa3.11□□□□□ -1.91
SCARB1-205ENST00000538291 KRTAP5-3Q6L8H2 238 aa3.09□□□□□ -1.91
SCARB1-205ENST00000538291 MUC5ACP98088 5654 aa3.05□□□□□ -1.92
SCARB1-205ENST00000538291 HMCN1Q96RW7 5635 aa2.94□□□□□ -1.94
SCARB1-205ENST00000538291 KRTAP5-2Q701N4 177 aa2.79□□□□□ -1.96
SCARB1-205ENST00000538291 KRTAP5-8O75690 187 aa2.79□□□□□ -1.96
SCARB1-205ENST00000538291 PHGR1C9JFL3 82 aa2.67□□□□□ -1.98
SCARB1-205ENST00000538291 KRTAP5-10Q6L8G5 202 aa2.62□□□□□ -1.99
SCARB1-205ENST00000538291 MUC5BQ9HC84 5762 aaPredicted RBP2.55□□□□□ -2
SCARB1-205ENST00000538291 AHNAKQ09666 5890 aaKnown RBP2.55□□□□□ -2
SCARB1-205ENST00000538291 KRTAP5-11Q6L8G4 156 aa2.49□□□□□ -2.01
SCARB1-205ENST00000538291 KRTAP5-1Q6L8H4 278 aa2.37□□□□□ -2.03
SCARB1-205ENST00000538291 KRTAP5-7Q6L8G8 165 aa2.33□□□□□ -2.04
SCARB1-205ENST00000538291 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.27□□□□□ -2.05
SCARB1-205ENST00000538291 KRTAP21-2Q3LI59 83 aa2.22□□□□□ -2.05
SCARB1-205ENST00000538291 KRTAP21-1Q3LI58 79 aa2.01□□□□□ -2.09
SCARB1-205ENST00000538291 MUC16Q8WXI7 14507 aa1.51□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 13 ms