RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 MT1EP04732 61 aa4.19□□□□□ -1.74
TCOF1-214ENST00000515035 PRM1P04553 51 aa4.18□□□□□ -1.74
TCOF1-214ENST00000515035 LCE2AQ5TA79 106 aaPredicted RBP4.18□□□□□ -1.74
TCOF1-214ENST00000515035 KRTAP9-6A0A140TA67 174 aa4.09□□□□□ -1.75
TCOF1-214ENST00000515035 MT1MQ8N339 61 aa4.07□□□□□ -1.76
TCOF1-214ENST00000515035 UBR4Q5T4S7 5183 aa4.07□□□□□ -1.76
TCOF1-214ENST00000515035 RNF213Q63HN8 5207 aa4.05□□□□□ -1.76
TCOF1-214ENST00000515035 MT3P25713 68 aa4.04□□□□□ -1.76
TCOF1-214ENST00000515035 FAT4Q6V0I7 4981 aa4.03□□□□□ -1.77
TCOF1-214ENST00000515035 LOC100996750A0A140TA64 210 aa4.02□□□□□ -1.77
TCOF1-214ENST00000515035 MT4P47944 62 aa3.95□□□□□ -1.78
TCOF1-214ENST00000515035 KRTAP4-3Q9BYR4 195 aa3.95□□□□□ -1.78
TCOF1-214ENST00000515035 KRTAP2-3P0C7H8 128 aa3.91□□□□□ -1.78
TCOF1-214ENST00000515035 KRTAP2-4Q9BYR9 128 aa3.91□□□□□ -1.78
TCOF1-214ENST00000515035 KRTAP2-1Q9BYU5 128 aa3.91□□□□□ -1.78
TCOF1-214ENST00000515035 KRTAP19-7Q3SYF9 63 aa3.91□□□□□ -1.78
TCOF1-214ENST00000515035 HMCN2Q8NDA2 5059 aa3.89□□□□□ -1.79
TCOF1-214ENST00000515035 LCE1BQ5T7P3 118 aa3.87□□□□□ -1.79
TCOF1-214ENST00000515035 FSIP2Q5CZC0 6907 aa3.87□□□□□ -1.79
TCOF1-214ENST00000515035 KRTAP9-7A8MTY7 169 aa3.84□□□□□ -1.79
TCOF1-214ENST00000515035 LCE1DQ5T752 114 aa3.84□□□□□ -1.79
TCOF1-214ENST00000515035 KRTAP4-9Q9BYQ8 210 aa3.84□□□□□ -1.79
TCOF1-214ENST00000515035 OBSCNQ5VST9 7968 aa3.83□□□□□ -1.8
TCOF1-214ENST00000515035 KRTAP6-3Q3LI67 103 aa3.83□□□□□ -1.8
TCOF1-214ENST00000515035 KRTAP20-1Q3LI63 56 aa3.82□□□□□ -1.8
TCOF1-214ENST00000515035 LCE1AQ5T7P2 110 aa3.81□□□□□ -1.8
TCOF1-214ENST00000515035 MUC2Q02817 5179 aa3.81□□□□□ -1.8
TCOF1-214ENST00000515035 MT1AP04731 61 aa3.79□□□□□ -1.8
TCOF1-214ENST00000515035 KRTAP9-6A8MVA2 160 aa3.73□□□□□ -1.81
TCOF1-214ENST00000515035 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.72□□□□□ -1.81
TCOF1-214ENST00000515035 SYNE2Q8WXH0 6885 aaKnown RBP3.71□□□□□ -1.82
TCOF1-214ENST00000515035 KRTAP6-2Q3LI66 62 aa3.63□□□□□ -1.83
TCOF1-214ENST00000515035 LCE5AQ5TCM9 118 aa3.6□□□□□ -1.83
TCOF1-214ENST00000515035 LCE4AQ5TA78 99 aa3.6□□□□□ -1.83
TCOF1-214ENST00000515035 KRTAP2-2Q9BYT5 123 aa3.58□□□□□ -1.84
TCOF1-214ENST00000515035 KRTAP6-1Q3LI64 71 aa3.56□□□□□ -1.84
TCOF1-214ENST00000515035 KRTAP9-4Q9BYQ2 154 aa3.48□□□□□ -1.85
TCOF1-214ENST00000515035 FCGBPQ9Y6R7 5405 aaPredicted RBP3.47□□□□□ -1.85
TCOF1-214ENST00000515035 USH2AO75445 5202 aa3.37□□□□□ -1.87
TCOF1-214ENST00000515035 DSTQ03001 7570 aaKnown RBP3.34□□□□□ -1.88
TCOF1-214ENST00000515035 MUC19Q7Z5P9 8384 aa3.28□□□□□ -1.88
TCOF1-214ENST00000515035 KRTAP5-9P26371 169 aa3.27□□□□□ -1.89
TCOF1-214ENST00000515035 LCE1CQ5T751 118 aa3.25□□□□□ -1.89
TCOF1-214ENST00000515035 LCE1EQ5T753 118 aa3.25□□□□□ -1.89
TCOF1-214ENST00000515035 LCE1FQ5T754 118 aa3.25□□□□□ -1.89
TCOF1-214ENST00000515035 MACF1Q9UPN3 7388 aaKnown RBP3.24□□□□□ -1.89
TCOF1-214ENST00000515035 NEBP20929 6669 aa3.22□□□□□ -1.89
TCOF1-214ENST00000515035 KMT2DO14686 5537 aa3.21□□□□□ -1.9
TCOF1-214ENST00000515035 SSPOA2VEC9 5147 aa3.16□□□□□ -1.9
TCOF1-214ENST00000515035 KRTAP9-9Q9BYP9 154 aa3.09□□□□□ -1.92
TCOF1-214ENST00000515035 KRTAP4-11Q9BYQ6 195 aa3.07□□□□□ -1.92
TCOF1-214ENST00000515035 MUC12Q9UKN1 5478 aa3□□□□□ -1.93
TCOF1-214ENST00000515035 KRTAP20-2Q3LI61 65 aa2.99□□□□□ -1.93
TCOF1-214ENST00000515035 KRTAP4-6Q9BYQ5 205 aa2.99□□□□□ -1.93
TCOF1-214ENST00000515035 MDN1Q9NU22 5596 aa2.98□□□□□ -1.93
TCOF1-214ENST00000515035 GPR98Q8WXG9 6306 aa2.95□□□□□ -1.94
TCOF1-214ENST00000515035 KRTAP5-4Q6L8H1 288 aa2.84□□□□□ -1.96
TCOF1-214ENST00000515035 KRTAP5-5Q701N2 237 aaPredicted RBP2.84□□□□□ -1.96
TCOF1-214ENST00000515035 KRTAP4-4Q9BYR3 166 aa2.71□□□□□ -1.98
TCOF1-214ENST00000515035 KRTAP4-12Q9BQ66 201 aa2.57□□□□□ -2
TCOF1-214ENST00000515035 KRTAP4-2Q9BYR5 136 aa2.57□□□□□ -2
TCOF1-214ENST00000515035 KRTAP5-3Q6L8H2 238 aa2.52□□□□□ -2.01
TCOF1-214ENST00000515035 MUC5ACP98088 5654 aa2.48□□□□□ -2.01
TCOF1-214ENST00000515035 AHNAK2Q8IVF2 5795 aa2.47□□□□□ -2.01
TCOF1-214ENST00000515035 HMCN1Q96RW7 5635 aa2.42□□□□□ -2.02
TCOF1-214ENST00000515035 KRTAP5-8O75690 187 aa2.27□□□□□ -2.05
TCOF1-214ENST00000515035 KRTAP5-2Q701N4 177 aa2.23□□□□□ -2.05
TCOF1-214ENST00000515035 KRTAP5-10Q6L8G5 202 aa2.22□□□□□ -2.05
TCOF1-214ENST00000515035 MUC5BQ9HC84 5762 aaPredicted RBP2.04□□□□□ -2.08
TCOF1-214ENST00000515035 AHNAKQ09666 5890 aaKnown RBP2.01□□□□□ -2.09
TCOF1-214ENST00000515035 PHGR1C9JFL3 82 aa2.01□□□□□ -2.09
TCOF1-214ENST00000515035 KRTAP5-11Q6L8G4 156 aa1.99□□□□□ -2.09
TCOF1-214ENST00000515035 KRTAP5-1Q6L8H4 278 aa1.95□□□□□ -2.1
TCOF1-214ENST00000515035 KRTAP21-2Q3LI59 83 aa1.87□□□□□ -2.11
TCOF1-214ENST00000515035 KRTAP21-1Q3LI58 79 aa1.82□□□□□ -2.12
TCOF1-214ENST00000515035 KRTAP5-7Q6L8G8 165 aa1.8□□□□□ -2.12
TCOF1-214ENST00000515035 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.77□□□□□ -2.13
TCOF1-214ENST00000515035 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 366.7 ms