RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 DCAF8L2P0C7V8 631 aa22.6■■□□□ 1.21
TCOF1-214ENST00000515035 NISCHQ9Y2I1 1504 aa22.09■■□□□ 1.13
TCOF1-214ENST00000515035 SUPT5HO00267 1087 aaKnown RBP21.46■■□□□ 1.03
TCOF1-214ENST00000515035 PELP1Q8IZL8 1130 aaKnown RBP21.45■■□□□ 1.03
TCOF1-214ENST00000515035 EHMT2Q96KQ7 1210 aa20.89■□□□□ 0.93
TCOF1-214ENST00000515035 SHROOM4Q9ULL8 1493 aa20.88■□□□□ 0.93
TCOF1-214ENST00000515035 PCGF6Q9BYE7 350 aa20.67■□□□□ 0.9
TCOF1-214ENST00000515035 CENPBP07199 599 aaPredicted RBP20.64■□□□□ 0.89
TCOF1-214ENST00000515035 ERICH6Q7L0X2 663 aa20.61■□□□□ 0.89
TCOF1-214ENST00000515035 MYT1Q01538 1121 aa20.61■□□□□ 0.89
TCOF1-214ENST00000515035 APLP2Q06481 763 aa20.52■□□□□ 0.88
TCOF1-214ENST00000515035 CCER1Q8TC90 406 aaPredicted RBP20.45■□□□□ 0.86
TCOF1-214ENST00000515035 ZEB1P37275 1124 aaPredicted RBP20.38■□□□□ 0.85
TCOF1-214ENST00000515035 TTBK1Q5TCY1 1321 aaPredicted RBP20.3■□□□□ 0.84
TCOF1-214ENST00000515035 FAM9AQ8IZU1 332 aaPredicted RBP20.29■□□□□ 0.84
TCOF1-214ENST00000515035 NEFLP07196 543 aa20.07■□□□□ 0.8
TCOF1-214ENST00000515035 YTHDC1Q96MU7 727 aaKnown RBP20.07■□□□□ 0.8
TCOF1-214ENST00000515035 RANGAP1P46060 587 aaPredicted RBP19.78■□□□□ 0.76
TCOF1-214ENST00000515035 TRIM41Q8WV44 630 aa19.78■□□□□ 0.76
TCOF1-214ENST00000515035 HRCP23327 699 aa19.75■□□□□ 0.75
TCOF1-214ENST00000515035 TRIM26Q12899 539 aaPredicted RBP19.6■□□□□ 0.73
TCOF1-214ENST00000515035 UBTFP17480 764 aaKnown RBP19.58■□□□□ 0.72
TCOF1-214ENST00000515035 ATP1B4Q9UN42 357 aaPredicted RBP19.57■□□□□ 0.72
TCOF1-214ENST00000515035 DAXXQ9UER7 740 aaPredicted RBP19.52■□□□□ 0.72
TCOF1-214ENST00000515035 PPARGC1BQ86YN6 1023 aaKnown RBP19.52■□□□□ 0.72
TCOF1-214ENST00000515035 RTL5Q5HYW3 569 aaPredicted RBP19.29■□□□□ 0.68
TCOF1-214ENST00000515035 ABCC9O60706 1549 aa19.24■□□□□ 0.67
TCOF1-214ENST00000515035 DIEXFQ68CQ4 756 aaKnown RBP19.18■□□□□ 0.66
TCOF1-214ENST00000515035 POLR3GLQ9BT43 218 aa19.14■□□□□ 0.66
TCOF1-214ENST00000515035 LOC105371045A0A1W2PR82 267 aa19.12■□□□□ 0.65
TCOF1-214ENST00000515035 ITGAEP38570 1179 aa19.11■□□□□ 0.65
TCOF1-214ENST00000515035 HNRNPUL2Q1KMD3 747 aaKnown RBP19.09■□□□□ 0.65
TCOF1-214ENST00000515035 ZNF316A6NFI3 1004 aaPredicted RBP19.07■□□□□ 0.64
TCOF1-214ENST00000515035 CHIC1Q5VXU3 224 aa19.07■□□□□ 0.64
TCOF1-214ENST00000515035 GTF3C3Q9Y5Q9 886 aa19.07■□□□□ 0.64
TCOF1-214ENST00000515035 CNGB1Q14028 1251 aaPredicted RBP19.03■□□□□ 0.64
TCOF1-214ENST00000515035 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.02■□□□□ 0.63
TCOF1-214ENST00000515035 PABPN1Q86U42 306 aaKnown RBP eCLIP19.01■□□□□ 0.63
TCOF1-214ENST00000515035 CLSPNQ9HAW4 1339 aa18.95■□□□□ 0.62
TCOF1-214ENST00000515035 BCANQ96GW7 911 aa18.93■□□□□ 0.62
TCOF1-214ENST00000515035 MYT1LQ9UL68 1186 aa18.89■□□□□ 0.61
TCOF1-214ENST00000515035 CDK11AQ9UQ88 783 aaPredicted RBP18.8■□□□□ 0.6
TCOF1-214ENST00000515035 ACIN1Q9UKV3 1341 aaKnown RBP18.74■□□□□ 0.59
TCOF1-214ENST00000515035 ANP32CO43423 234 aa18.61■□□□□ 0.57
TCOF1-214ENST00000515035 SLC4A1APQ9BWU0 796 aaKnown RBP18.6■□□□□ 0.57
TCOF1-214ENST00000515035 EIF5BO60841 1220 aaKnown RBP18.57■□□□□ 0.56
TCOF1-214ENST00000515035 NEUROD1Q13562 356 aa18.54■□□□□ 0.56
TCOF1-214ENST00000515035 ANP32AP39687 249 aaKnown RBP18.52■□□□□ 0.56
TCOF1-214ENST00000515035 FAM50AQ14320 339 aaKnown RBP18.5■□□□□ 0.55
TCOF1-214ENST00000515035 FBLN2P98095 1184 aa18.44■□□□□ 0.54
TCOF1-214ENST00000515035 TRIM52Q96A61 297 aa18.43■□□□□ 0.54
TCOF1-214ENST00000515035 ZBTB47Q9UFB7 747 aaPredicted RBP18.38■□□□□ 0.53
TCOF1-214ENST00000515035 NPM2Q86SE8 214 aaKnown RBP18.38■□□□□ 0.53
TCOF1-214ENST00000515035 SCRIBQ14160 1630 aa18.34■□□□□ 0.53
TCOF1-214ENST00000515035 GLIPR1L2Q4G1C9 344 aa18.34■□□□□ 0.53
TCOF1-214ENST00000515035 FKBP8Q14318 412 aa18.33■□□□□ 0.52
TCOF1-214ENST00000515035 ZNF326Q5BKZ1 582 aaKnown RBP18.31■□□□□ 0.52
TCOF1-214ENST00000515035 CANXP27824 592 aaKnown RBP18.3■□□□□ 0.52
TCOF1-214ENST00000515035 CCDC180Q9P1Z9 1646 aa18.27■□□□□ 0.52
TCOF1-214ENST00000515035 ZCCHC6Q5VYS8 1495 aaKnown RBP18.25■□□□□ 0.51
TCOF1-214ENST00000515035 BCL11AQ9H165 835 aa18.24■□□□□ 0.51
TCOF1-214ENST00000515035 ANP32BQ92688 251 aaKnown RBP18.23■□□□□ 0.51
TCOF1-214ENST00000515035 SCAF1Q9H7N4 1312 aaKnown RBP18.18■□□□□ 0.5
TCOF1-214ENST00000515035 NBR1Q14596 966 aa18.17■□□□□ 0.5
TCOF1-214ENST00000515035 CSRNP3Q8WYN3 585 aa18.14■□□□□ 0.49
TCOF1-214ENST00000515035 DCAF1Q9Y4B6 1507 aa18.13■□□□□ 0.49
TCOF1-214ENST00000515035 HNRNPUQ00839 825 aaKnown RBP eCLIP18.1■□□□□ 0.49
TCOF1-214ENST00000515035 RB1CC1Q8TDY2 1594 aa18.08■□□□□ 0.48
TCOF1-214ENST00000515035 HSP90AA1P07900 732 aaKnown RBP18.08■□□□□ 0.48
TCOF1-214ENST00000515035 P3H3Q8IVL6 736 aa18.05■□□□□ 0.48
TCOF1-214ENST00000515035 UPF2Q9HAU5 1272 aaKnown RBP18.05■□□□□ 0.48
TCOF1-214ENST00000515035 NEFMP07197 916 aa18.02■□□□□ 0.48
TCOF1-214ENST00000515035 CCDC136Q96JN2 1154 aa18■□□□□ 0.47
TCOF1-214ENST00000515035 DDX10Q13206 875 aaKnown RBP17.99■□□□□ 0.47
TCOF1-214ENST00000515035 ARID3CA6NKF2 412 aa17.98■□□□□ 0.47
TCOF1-214ENST00000515035 SLC24A1O60721 1099 aa17.98■□□□□ 0.47
TCOF1-214ENST00000515035 ARXQ96QS3 562 aa17.98■□□□□ 0.47
TCOF1-214ENST00000515035 FAM9BQ8IZU0 186 aa17.97■□□□□ 0.47
TCOF1-214ENST00000515035 NPM1P06748 294 aaKnown RBP eCLIP17.96■□□□□ 0.47
TCOF1-214ENST00000515035 ANP32EQ9BTT0 268 aa17.91■□□□□ 0.46
TCOF1-214ENST00000515035 ZNF777Q9ULD5 760 aaPredicted RBP17.9■□□□□ 0.46
TCOF1-214ENST00000515035 NACADO15069 1562 aa17.88■□□□□ 0.45
TCOF1-214ENST00000515035 TONSLQ96HA7 1378 aa17.88■□□□□ 0.45
TCOF1-214ENST00000515035 MIER1Q8N108 512 aa17.87■□□□□ 0.45
TCOF1-214ENST00000515035 ESF1Q9H501 851 aaKnown RBP17.86■□□□□ 0.45
TCOF1-214ENST00000515035 SALL2Q9Y467 1007 aaPredicted RBP17.86■□□□□ 0.45
TCOF1-214ENST00000515035 IRX6P78412 446 aaPredicted RBP17.84■□□□□ 0.45
TCOF1-214ENST00000515035 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.82■□□□□ 0.44
TCOF1-214ENST00000515035 CHMP7Q8WUX9 453 aaPredicted RBP17.78■□□□□ 0.44
TCOF1-214ENST00000515035 TMC1Q8TDI8 760 aa17.78■□□□□ 0.44
TCOF1-214ENST00000515035 MRS2Q9HD23 443 aa17.76■□□□□ 0.43
TCOF1-214ENST00000515035 TRIM44Q96DX7 344 aaPredicted RBP17.73■□□□□ 0.43
TCOF1-214ENST00000515035 DDRGK1Q96HY6 314 aa17.7■□□□□ 0.42
TCOF1-214ENST00000515035 STAG3Q9UJ98 1225 aa17.66■□□□□ 0.42
TCOF1-214ENST00000515035 BAZ1BQ9UIG0 1483 aaKnown RBP17.66■□□□□ 0.42
TCOF1-214ENST00000515035 ERICH6BQ5W0A0 696 aa17.65■□□□□ 0.42
TCOF1-214ENST00000515035 TNNT2P45379 298 aaPredicted RBP17.65■□□□□ 0.42
TCOF1-214ENST00000515035 BECN1Q14457 450 aa17.65■□□□□ 0.42
TCOF1-214ENST00000515035 MYO15BQ96JP2 1530 aa17.65■□□□□ 0.42
TCOF1-214ENST00000515035 RTN4Q9NQC3 1192 aaKnown RBP17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms