RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 PKHD1L1Q86WI1 4243 aa2.75□□□□□ -1.97
VCAN-208ENST00000512590 MUC2Q02817 5179 aa2.75□□□□□ -1.97
VCAN-208ENST00000512590 PRM1P04553 51 aa2.74□□□□□ -1.97
VCAN-208ENST00000512590 MT1LQ93083 61 aa2.74□□□□□ -1.97
VCAN-208ENST00000512590 KRTAP9-3Q9BYQ3 159 aa2.74□□□□□ -1.97
VCAN-208ENST00000512590 KRTAP9-8Q9BYQ0 159 aa2.72□□□□□ -1.97
VCAN-208ENST00000512590 ABCA13Q86UQ4 5058 aa2.7□□□□□ -1.98
VCAN-208ENST00000512590 MT1MQ8N339 61 aa2.69□□□□□ -1.98
VCAN-208ENST00000512590 KRTAP4-9Q9BYQ8 210 aa2.69□□□□□ -1.98
VCAN-208ENST00000512590 KRTAP2-2Q9BYT5 123 aa2.68□□□□□ -1.98
VCAN-208ENST00000512590 KRTAP2-1Q9BYU5 128 aa2.68□□□□□ -1.98
VCAN-208ENST00000512590 BIRC6Q9NR09 4857 aa2.68□□□□□ -1.98
VCAN-208ENST00000512590 MT1EP04732 61 aa2.67□□□□□ -1.98
VCAN-208ENST00000512590 HERC2O95714 4834 aa2.67□□□□□ -1.98
VCAN-208ENST00000512590 KRTAP9-9Q9BYP9 154 aa2.66□□□□□ -1.98
VCAN-208ENST00000512590 TNXBP22105 4242 aa2.66□□□□□ -1.98
VCAN-208ENST00000512590 KRTAP4-7Q9BYR0 210 aa2.65□□□□□ -1.99
VCAN-208ENST00000512590 LCE4AQ5TA78 99 aa2.64□□□□□ -1.99
VCAN-208ENST00000512590 KRTAP6-3Q3LI67 103 aa2.64□□□□□ -1.99
VCAN-208ENST00000512590 RNF213Q63HN8 5207 aa2.6□□□□□ -1.99
VCAN-208ENST00000512590 FAT4Q6V0I7 4981 aa2.6□□□□□ -1.99
VCAN-208ENST00000512590 PCLOQ9Y6V0 5065 aa2.6□□□□□ -1.99
VCAN-208ENST00000512590 LOC100996750A0A140TA64 210 aa2.58□□□□□ -2
VCAN-208ENST00000512590 KRTAP4-6Q9BYQ5 205 aa2.58□□□□□ -2
VCAN-208ENST00000512590 KRTAP19-2Q3LHN2 52 aa2.58□□□□□ -2
VCAN-208ENST00000512590 FSIP2Q5CZC0 6907 aa2.58□□□□□ -2
VCAN-208ENST00000512590 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.55□□□□□ -2
VCAN-208ENST00000512590 SYNE1Q8NF91 8797 aaKnown RBP2.55□□□□□ -2
VCAN-208ENST00000512590 MT1AP04731 61 aa2.54□□□□□ -2
VCAN-208ENST00000512590 UBR4Q5T4S7 5183 aa2.54□□□□□ -2
VCAN-208ENST00000512590 SYNE2Q8WXH0 6885 aaKnown RBP2.53□□□□□ -2
VCAN-208ENST00000512590 KRTAP4-3Q9BYR4 195 aa2.52□□□□□ -2.01
VCAN-208ENST00000512590 MUC17Q685J3 4493 aa2.5□□□□□ -2.01
VCAN-208ENST00000512590 KRTAP4-12Q9BQ66 201 aa2.46□□□□□ -2.02
VCAN-208ENST00000512590 OBSCNQ5VST9 7968 aa2.44□□□□□ -2.02
VCAN-208ENST00000512590 HMCN2Q8NDA2 5059 aa2.44□□□□□ -2.02
VCAN-208ENST00000512590 FLGP20930 4061 aaPredicted RBP2.44□□□□□ -2.02
VCAN-208ENST00000512590 KRTAP6-2Q3LI66 62 aa2.44□□□□□ -2.02
VCAN-208ENST00000512590 KRTAP9-4Q9BYQ2 154 aa2.38□□□□□ -2.03
VCAN-208ENST00000512590 USH2AO75445 5202 aa2.37□□□□□ -2.03
VCAN-208ENST00000512590 KMT2DO14686 5537 aa2.35□□□□□ -2.03
VCAN-208ENST00000512590 KRTAP20-2Q3LI61 65 aa2.33□□□□□ -2.04
VCAN-208ENST00000512590 KRTAP19-7Q3SYF9 63 aa2.32□□□□□ -2.04
VCAN-208ENST00000512590 KRTAP6-1Q3LI64 71 aa2.26□□□□□ -2.05
VCAN-208ENST00000512590 DSTQ03001 7570 aaKnown RBP2.22□□□□□ -2.05
VCAN-208ENST00000512590 NEBP20929 6669 aa2.15□□□□□ -2.06
VCAN-208ENST00000512590 FCGBPQ9Y6R7 5405 aaPredicted RBP2.14□□□□□ -2.07
VCAN-208ENST00000512590 KRTAP4-2Q9BYR5 136 aa2.11□□□□□ -2.07
VCAN-208ENST00000512590 GPR98Q8WXG9 6306 aa2.1□□□□□ -2.07
VCAN-208ENST00000512590 KRTAP9-6A8MVA2 160 aa2.06□□□□□ -2.08
VCAN-208ENST00000512590 MUC12Q9UKN1 5478 aa2.05□□□□□ -2.08
VCAN-208ENST00000512590 KRTAP4-11Q9BYQ6 195 aa2.04□□□□□ -2.08
VCAN-208ENST00000512590 KRTAP4-4Q9BYR3 166 aa2.03□□□□□ -2.08
VCAN-208ENST00000512590 MUC19Q7Z5P9 8384 aa2.02□□□□□ -2.09
VCAN-208ENST00000512590 SSPOA2VEC9 5147 aa1.99□□□□□ -2.09
VCAN-208ENST00000512590 MACF1Q9UPN3 7388 aaKnown RBP1.94□□□□□ -2.1
VCAN-208ENST00000512590 KRTAP5-9P26371 169 aa1.86□□□□□ -2.11
VCAN-208ENST00000512590 PHGR1C9JFL3 82 aa1.82□□□□□ -2.12
VCAN-208ENST00000512590 KRTAP5-4Q6L8H1 288 aa1.81□□□□□ -2.12
VCAN-208ENST00000512590 MDN1Q9NU22 5596 aa1.78□□□□□ -2.12
VCAN-208ENST00000512590 KRTAP5-5Q701N2 237 aaPredicted RBP1.75□□□□□ -2.13
VCAN-208ENST00000512590 KRTAP5-3Q6L8H2 238 aa1.71□□□□□ -2.14
VCAN-208ENST00000512590 MUC5ACP98088 5654 aa1.51□□□□□ -2.17
VCAN-208ENST00000512590 AHNAK2Q8IVF2 5795 aa1.5□□□□□ -2.17
VCAN-208ENST00000512590 KRTAP5-11Q6L8G4 156 aa1.5□□□□□ -2.17
VCAN-208ENST00000512590 KRTAP5-8O75690 187 aa1.47□□□□□ -2.17
VCAN-208ENST00000512590 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.38□□□□□ -2.19
VCAN-208ENST00000512590 HMCN1Q96RW7 5635 aa1.38□□□□□ -2.19
VCAN-208ENST00000512590 KRTAP5-2Q701N4 177 aa1.33□□□□□ -2.2
VCAN-208ENST00000512590 MUC5BQ9HC84 5762 aaPredicted RBP1.29□□□□□ -2.2
VCAN-208ENST00000512590 KRTAP5-7Q6L8G8 165 aa1.27□□□□□ -2.21
VCAN-208ENST00000512590 KRTAP5-10Q6L8G5 202 aa1.27□□□□□ -2.21
VCAN-208ENST00000512590 KRTAP5-1Q6L8H4 278 aa1.26□□□□□ -2.21
VCAN-208ENST00000512590 KRTAP21-1Q3LI58 79 aa1.26□□□□□ -2.21
VCAN-208ENST00000512590 KRTAP21-2Q3LI59 83 aa1.21□□□□□ -2.22
VCAN-208ENST00000512590 AHNAKQ09666 5890 aaKnown RBP1.21□□□□□ -2.22
VCAN-208ENST00000512590 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 90.1 ms