RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 DCAF8L2P0C7V8 631 aa15.65■□□□□ 0.1
VCAN-208ENST00000512590 FAM9AQ8IZU1 332 aaPredicted RBP14.77□□□□□ -0.04
VCAN-208ENST00000512590 PELP1Q8IZL8 1130 aaKnown RBP14.27□□□□□ -0.13
VCAN-208ENST00000512590 APLP2Q06481 763 aa14.2□□□□□ -0.14
VCAN-208ENST00000512590 EHMT2Q96KQ7 1210 aa14.14□□□□□ -0.15
VCAN-208ENST00000512590 MYT1LQ9UL68 1186 aa14□□□□□ -0.17
VCAN-208ENST00000512590 ATP1B4Q9UN42 357 aaPredicted RBP13.9□□□□□ -0.18
VCAN-208ENST00000512590 SUPT5HO00267 1087 aaKnown RBP13.86□□□□□ -0.19
VCAN-208ENST00000512590 ERICH6Q7L0X2 663 aa13.8□□□□□ -0.2
VCAN-208ENST00000512590 CHIC1Q5VXU3 224 aa13.71□□□□□ -0.22
VCAN-208ENST00000512590 RANGAP1P46060 587 aaPredicted RBP13.7□□□□□ -0.22
VCAN-208ENST00000512590 CCER1Q8TC90 406 aaPredicted RBP13.69□□□□□ -0.22
VCAN-208ENST00000512590 TTBK1Q5TCY1 1321 aaPredicted RBP13.59□□□□□ -0.23
VCAN-208ENST00000512590 SLC4A1APQ9BWU0 796 aaKnown RBP13.49□□□□□ -0.25
VCAN-208ENST00000512590 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.48□□□□□ -0.25
VCAN-208ENST00000512590 HNRNPUL2Q1KMD3 747 aaKnown RBP13.48□□□□□ -0.25
VCAN-208ENST00000512590 SHROOM4Q9ULL8 1493 aa13.37□□□□□ -0.27
VCAN-208ENST00000512590 DAXXQ9UER7 740 aaPredicted RBP13.33□□□□□ -0.28
VCAN-208ENST00000512590 POLR3GLQ9BT43 218 aa13.31□□□□□ -0.28
VCAN-208ENST00000512590 NEFLP07196 543 aa13.24□□□□□ -0.29
VCAN-208ENST00000512590 SLC24A1O60721 1099 aa13.24□□□□□ -0.29
VCAN-208ENST00000512590 BCANQ96GW7 911 aa13.21□□□□□ -0.29
VCAN-208ENST00000512590 MYT1Q01538 1121 aa13.11□□□□□ -0.31
VCAN-208ENST00000512590 UBTFP17480 764 aaKnown RBP13.1□□□□□ -0.31
VCAN-208ENST00000512590 PCGF6Q9BYE7 350 aa13.06□□□□□ -0.32
VCAN-208ENST00000512590 CNGB1Q14028 1251 aaPredicted RBP13.05□□□□□ -0.32
VCAN-208ENST00000512590 PLPPR3Q6T4P5 718 aa13.04□□□□□ -0.32
VCAN-208ENST00000512590 ZBTB47Q9UFB7 747 aaPredicted RBP13.03□□□□□ -0.32
VCAN-208ENST00000512590 CLSPNQ9HAW4 1339 aa13□□□□□ -0.33
VCAN-208ENST00000512590 ESF1Q9H501 851 aaKnown RBP13□□□□□ -0.33
VCAN-208ENST00000512590 CENPBP07199 599 aaPredicted RBP12.94□□□□□ -0.34
VCAN-208ENST00000512590 A0A0G2JS52 829 aa12.91□□□□□ -0.34
VCAN-208ENST00000512590 YTHDC1Q96MU7 727 aaKnown RBP12.9□□□□□ -0.34
VCAN-208ENST00000512590 ZNF316A6NFI3 1004 aaPredicted RBP12.88□□□□□ -0.35
VCAN-208ENST00000512590 BCL11AQ9H165 835 aa12.87□□□□□ -0.35
VCAN-208ENST00000512590 ITGAEP38570 1179 aa12.85□□□□□ -0.35
VCAN-208ENST00000512590 NISCHQ9Y2I1 1504 aa12.84□□□□□ -0.35
VCAN-208ENST00000512590 NEFMP07197 916 aa12.83□□□□□ -0.36
VCAN-208ENST00000512590 SCAF1Q9H7N4 1312 aaKnown RBP12.83□□□□□ -0.36
VCAN-208ENST00000512590 TRIM41Q8WV44 630 aa12.8□□□□□ -0.36
VCAN-208ENST00000512590 FBLN2P98095 1184 aa12.79□□□□□ -0.36
VCAN-208ENST00000512590 CDK11BP21127 795 aaKnown RBP12.73□□□□□ -0.37
VCAN-208ENST00000512590 STAG3Q9UJ98 1225 aa12.73□□□□□ -0.37
VCAN-208ENST00000512590 CDK11AQ9UQ88 783 aaPredicted RBP12.73□□□□□ -0.37
VCAN-208ENST00000512590 NPM2Q86SE8 214 aaKnown RBP12.68□□□□□ -0.38
VCAN-208ENST00000512590 CANXP27824 592 aaKnown RBP12.61□□□□□ -0.39
VCAN-208ENST00000512590 NPM1P06748 294 aaKnown RBP eCLIP12.6□□□□□ -0.39
VCAN-208ENST00000512590 TRIM52Q96A61 297 aa12.6□□□□□ -0.39
VCAN-208ENST00000512590 HAP1P54257 671 aaPredicted RBP12.6□□□□□ -0.39
VCAN-208ENST00000512590 ZEB1P37275 1124 aaPredicted RBP12.55□□□□□ -0.4
VCAN-208ENST00000512590 ZNF326Q5BKZ1 582 aaKnown RBP12.53□□□□□ -0.4
VCAN-208ENST00000512590 NCBP3Q53F19 620 aaKnown RBP12.52□□□□□ -0.41
VCAN-208ENST00000512590 RTL5Q5HYW3 569 aaPredicted RBP12.52□□□□□ -0.41
VCAN-208ENST00000512590 TULP1O00294 542 aaPredicted RBP12.51□□□□□ -0.41
VCAN-208ENST00000512590 C14orf37Q86TY3 774 aa12.51□□□□□ -0.41
VCAN-208ENST00000512590 ZBTB7CA1YPR0 619 aa12.51□□□□□ -0.41
VCAN-208ENST00000512590 PLEKHG5O94827 1062 aa12.5□□□□□ -0.41
VCAN-208ENST00000512590 CHGAP10645 457 aaKnown RBP12.48□□□□□ -0.41
VCAN-208ENST00000512590 NPHP1O15259 732 aa12.48□□□□□ -0.41
VCAN-208ENST00000512590 KRI1Q8N9T8 703 aaKnown RBP12.46□□□□□ -0.41
VCAN-208ENST00000512590 PPARGC1BQ86YN6 1023 aaKnown RBP12.43□□□□□ -0.42
VCAN-208ENST00000512590 FAM50AQ14320 339 aaKnown RBP12.43□□□□□ -0.42
VCAN-208ENST00000512590 ARXQ96QS3 562 aa12.39□□□□□ -0.43
VCAN-208ENST00000512590 SENP3Q9H4L4 574 aaPredicted RBP12.39□□□□□ -0.43
VCAN-208ENST00000512590 AEBP2Q6ZN18 517 aaPredicted RBP12.34□□□□□ -0.43
VCAN-208ENST00000512590 ARID4BQ4LE39 1312 aaPredicted RBP12.31□□□□□ -0.44
VCAN-208ENST00000512590 DCAF8L1A6NGE4 600 aa12.29□□□□□ -0.44
VCAN-208ENST00000512590 ZNF777Q9ULD5 760 aaPredicted RBP12.28□□□□□ -0.44
VCAN-208ENST00000512590 TRHP20396 242 aaPredicted RBP12.28□□□□□ -0.44
VCAN-208ENST00000512590 ARID3CA6NKF2 412 aa12.27□□□□□ -0.44
VCAN-208ENST00000512590 HSP90AA1P07900 732 aaKnown RBP12.25□□□□□ -0.45
VCAN-208ENST00000512590 PRM3Q9NNZ6 103 aa12.25□□□□□ -0.45
VCAN-208ENST00000512590 CLSTN1O94985 981 aa12.25□□□□□ -0.45
VCAN-208ENST00000512590 ANP32BQ92688 251 aaKnown RBP12.23□□□□□ -0.45
VCAN-208ENST00000512590 PPP1R15AO75807 674 aaPredicted RBP12.22□□□□□ -0.45
VCAN-208ENST00000512590 NEUROD1Q13562 356 aa12.2□□□□□ -0.46
VCAN-208ENST00000512590 GOLGA2Q08379 1002 aa12.2□□□□□ -0.46
VCAN-208ENST00000512590 LMOD2Q6P5Q4 547 aa12.15□□□□□ -0.46
VCAN-208ENST00000512590 TMX4Q9H1E5 349 aaPredicted RBP12.12□□□□□ -0.47
VCAN-208ENST00000512590 PABPN1Q86U42 306 aaKnown RBP eCLIP12.1□□□□□ -0.47
VCAN-208ENST00000512590 ISY1Q9ULR0 285 aaKnown RBP12.1□□□□□ -0.47
VCAN-208ENST00000512590 FKBP8Q14318 412 aa12.09□□□□□ -0.47
VCAN-208ENST00000512590 PHF23Q9BUL5 403 aaPredicted RBP12.06□□□□□ -0.48
VCAN-208ENST00000512590 MYH16Q9H6N6 1097 aa12.03□□□□□ -0.48
VCAN-208ENST00000512590 UPF2Q9HAU5 1272 aaKnown RBP12.02□□□□□ -0.48
VCAN-208ENST00000512590 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.02□□□□□ -0.49
VCAN-208ENST00000512590 CCDC9Q9Y3X0 531 aaKnown RBP12.02□□□□□ -0.49
VCAN-208ENST00000512590 DIEXFQ68CQ4 756 aaKnown RBP12.02□□□□□ -0.49
VCAN-208ENST00000512590 ANP32CO43423 234 aa12.01□□□□□ -0.49
VCAN-208ENST00000512590 EIF4G2P78344 907 aaKnown RBP eCLIP11.99□□□□□ -0.49
VCAN-208ENST00000512590 ZRSR1Q15695 479 aaKnown RBP11.99□□□□□ -0.49
VCAN-208ENST00000512590 TAOK2Q9UL54 1235 aa11.99□□□□□ -0.49
VCAN-208ENST00000512590 P3H3Q8IVL6 736 aa11.96□□□□□ -0.49
VCAN-208ENST00000512590 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.95□□□□□ -0.5
VCAN-208ENST00000512590 G3V3G9 751 aa11.95□□□□□ -0.5
VCAN-208ENST00000512590 DCAF8Q5TAQ9 597 aa11.95□□□□□ -0.5
VCAN-208ENST00000512590 CNKSR2Q8WXI2 1034 aa11.92□□□□□ -0.5
VCAN-208ENST00000512590 NCLP19338 710 aaKnown RBP11.88□□□□□ -0.51
VCAN-208ENST00000512590 TRIM44Q96DX7 344 aaPredicted RBP11.88□□□□□ -0.51
VCAN-208ENST00000512590 CHMP7Q8WUX9 453 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms