RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 KRTAP9-6A0A140TA67 174 aa5.91□□□□□ -1.46
CCDC88B-204ENST00000463837 MT1MQ8N339 61 aa5.9□□□□□ -1.46
CCDC88B-204ENST00000463837 LOC100996750A0A140TA64 210 aa5.85□□□□□ -1.47
CCDC88B-204ENST00000463837 LCE2AQ5TA79 106 aaPredicted RBP5.83□□□□□ -1.48
CCDC88B-204ENST00000463837 MT3P25713 68 aa5.82□□□□□ -1.48
CCDC88B-204ENST00000463837 PRM1P04553 51 aa5.82□□□□□ -1.48
CCDC88B-204ENST00000463837 KRTAP2-3P0C7H8 128 aa5.81□□□□□ -1.48
CCDC88B-204ENST00000463837 KRTAP2-4Q9BYR9 128 aa5.81□□□□□ -1.48
CCDC88B-204ENST00000463837 KRTAP2-1Q9BYU5 128 aa5.81□□□□□ -1.48
CCDC88B-204ENST00000463837 SYNE1Q8NF91 8797 aaKnown RBP5.81□□□□□ -1.48
CCDC88B-204ENST00000463837 KRTAP4-3Q9BYR4 195 aa5.77□□□□□ -1.49
CCDC88B-204ENST00000463837 KRTAP19-7Q3SYF9 63 aa5.74□□□□□ -1.49
CCDC88B-204ENST00000463837 MT4P47944 62 aa5.7□□□□□ -1.5
CCDC88B-204ENST00000463837 FAT4Q6V0I7 4981 aa5.7□□□□□ -1.5
CCDC88B-204ENST00000463837 RNF213Q63HN8 5207 aa5.68□□□□□ -1.5
CCDC88B-204ENST00000463837 UBR4Q5T4S7 5183 aa5.67□□□□□ -1.5
CCDC88B-204ENST00000463837 FSIP2Q5CZC0 6907 aa5.62□□□□□ -1.51
CCDC88B-204ENST00000463837 HMCN2Q8NDA2 5059 aa5.58□□□□□ -1.52
CCDC88B-204ENST00000463837 MT1AP04731 61 aa5.56□□□□□ -1.52
CCDC88B-204ENST00000463837 KRTAP4-9Q9BYQ8 210 aa5.52□□□□□ -1.53
CCDC88B-204ENST00000463837 KRTAP9-7A8MTY7 169 aa5.51□□□□□ -1.53
CCDC88B-204ENST00000463837 KRTAP20-1Q3LI63 56 aa5.46□□□□□ -1.53
CCDC88B-204ENST00000463837 LCE1BQ5T7P3 118 aa5.46□□□□□ -1.54
CCDC88B-204ENST00000463837 LCE1DQ5T752 114 aa5.45□□□□□ -1.54
CCDC88B-204ENST00000463837 KRTAP9-6A8MVA2 160 aa5.41□□□□□ -1.54
CCDC88B-204ENST00000463837 KRTAP6-3Q3LI67 103 aa5.41□□□□□ -1.54
CCDC88B-204ENST00000463837 LCE1AQ5T7P2 110 aa5.37□□□□□ -1.55
CCDC88B-204ENST00000463837 MUC2Q02817 5179 aa5.34□□□□□ -1.55
CCDC88B-204ENST00000463837 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.3□□□□□ -1.56
CCDC88B-204ENST00000463837 OBSCNQ5VST9 7968 aa5.25□□□□□ -1.57
CCDC88B-204ENST00000463837 SYNE2Q8WXH0 6885 aaKnown RBP5.21□□□□□ -1.57
CCDC88B-204ENST00000463837 KRTAP6-1Q3LI64 71 aa5.16□□□□□ -1.58
CCDC88B-204ENST00000463837 LCE5AQ5TCM9 118 aa5.16□□□□□ -1.58
CCDC88B-204ENST00000463837 KRTAP6-2Q3LI66 62 aa5.14□□□□□ -1.59
CCDC88B-204ENST00000463837 LCE4AQ5TA78 99 aa5.11□□□□□ -1.59
CCDC88B-204ENST00000463837 KRTAP9-4Q9BYQ2 154 aa5.1□□□□□ -1.59
CCDC88B-204ENST00000463837 KRTAP2-2Q9BYT5 123 aa5.07□□□□□ -1.6
CCDC88B-204ENST00000463837 FCGBPQ9Y6R7 5405 aaPredicted RBP4.97□□□□□ -1.61
CCDC88B-204ENST00000463837 USH2AO75445 5202 aa4.87□□□□□ -1.63
CCDC88B-204ENST00000463837 KMT2DO14686 5537 aa4.71□□□□□ -1.65
CCDC88B-204ENST00000463837 DSTQ03001 7570 aaKnown RBP4.71□□□□□ -1.66
CCDC88B-204ENST00000463837 LCE1CQ5T751 118 aa4.69□□□□□ -1.66
CCDC88B-204ENST00000463837 LCE1EQ5T753 118 aa4.69□□□□□ -1.66
CCDC88B-204ENST00000463837 LCE1FQ5T754 118 aa4.69□□□□□ -1.66
CCDC88B-204ENST00000463837 KRTAP5-9P26371 169 aa4.57□□□□□ -1.68
CCDC88B-204ENST00000463837 NEBP20929 6669 aa4.55□□□□□ -1.68
CCDC88B-204ENST00000463837 MACF1Q9UPN3 7388 aaKnown RBP4.52□□□□□ -1.69
CCDC88B-204ENST00000463837 SSPOA2VEC9 5147 aa4.47□□□□□ -1.69
CCDC88B-204ENST00000463837 KRTAP9-9Q9BYP9 154 aa4.47□□□□□ -1.69
CCDC88B-204ENST00000463837 MUC12Q9UKN1 5478 aa4.37□□□□□ -1.71
CCDC88B-204ENST00000463837 KRTAP4-11Q9BYQ6 195 aa4.3□□□□□ -1.72
CCDC88B-204ENST00000463837 GPR98Q8WXG9 6306 aa4.28□□□□□ -1.72
CCDC88B-204ENST00000463837 MUC19Q7Z5P9 8384 aa4.23□□□□□ -1.73
CCDC88B-204ENST00000463837 MDN1Q9NU22 5596 aa4.22□□□□□ -1.73
CCDC88B-204ENST00000463837 KRTAP20-2Q3LI61 65 aa4.18□□□□□ -1.74
CCDC88B-204ENST00000463837 KRTAP4-6Q9BYQ5 205 aa4.18□□□□□ -1.74
CCDC88B-204ENST00000463837 KRTAP5-5Q701N2 237 aaPredicted RBP4.15□□□□□ -1.74
CCDC88B-204ENST00000463837 KRTAP5-4Q6L8H1 288 aa3.96□□□□□ -1.78
CCDC88B-204ENST00000463837 KRTAP4-4Q9BYR3 166 aa3.85□□□□□ -1.79
CCDC88B-204ENST00000463837 KRTAP4-12Q9BQ66 201 aa3.71□□□□□ -1.82
CCDC88B-204ENST00000463837 KRTAP4-2Q9BYR5 136 aa3.71□□□□□ -1.82
CCDC88B-204ENST00000463837 KRTAP5-3Q6L8H2 238 aa3.56□□□□□ -1.84
CCDC88B-204ENST00000463837 MUC5ACP98088 5654 aa3.48□□□□□ -1.85
CCDC88B-204ENST00000463837 AHNAK2Q8IVF2 5795 aa3.47□□□□□ -1.85
CCDC88B-204ENST00000463837 HMCN1Q96RW7 5635 aa3.36□□□□□ -1.87
CCDC88B-204ENST00000463837 KRTAP5-10Q6L8G5 202 aa3.27□□□□□ -1.89
CCDC88B-204ENST00000463837 KRTAP5-8O75690 187 aa3.2□□□□□ -1.9
CCDC88B-204ENST00000463837 KRTAP5-2Q701N4 177 aa3.17□□□□□ -1.9
CCDC88B-204ENST00000463837 PHGR1C9JFL3 82 aa2.88□□□□□ -1.95
CCDC88B-204ENST00000463837 MUC5BQ9HC84 5762 aaPredicted RBP2.86□□□□□ -1.95
CCDC88B-204ENST00000463837 AHNAKQ09666 5890 aaKnown RBP2.83□□□□□ -1.96
CCDC88B-204ENST00000463837 KRTAP5-11Q6L8G4 156 aa2.82□□□□□ -1.96
CCDC88B-204ENST00000463837 KRTAP5-1Q6L8H4 278 aa2.79□□□□□ -1.96
CCDC88B-204ENST00000463837 KRTAP21-2Q3LI59 83 aa2.74□□□□□ -1.97
CCDC88B-204ENST00000463837 KRTAP21-1Q3LI58 79 aa2.72□□□□□ -1.97
CCDC88B-204ENST00000463837 KRTAP5-7Q6L8G8 165 aa2.68□□□□□ -1.98
CCDC88B-204ENST00000463837 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.65□□□□□ -1.98
CCDC88B-204ENST00000463837 MUC16Q8WXI7 14507 aa1.7□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 5.3 ms