RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 DCAF8L2P0C7V8 631 aa32.25■■■□□ 2.75
CCDC88B-204ENST00000463837 NISCHQ9Y2I1 1504 aa31.77■■■□□ 2.68
CCDC88B-204ENST00000463837 SUPT5HO00267 1087 aaKnown RBP31.03■■■□□ 2.56
CCDC88B-204ENST00000463837 SHROOM4Q9ULL8 1493 aa30.34■■■□□ 2.45
CCDC88B-204ENST00000463837 PELP1Q8IZL8 1130 aaKnown RBP30.06■■■□□ 2.4
CCDC88B-204ENST00000463837 EHMT2Q96KQ7 1210 aa30.03■■■□□ 2.4
CCDC88B-204ENST00000463837 PCGF6Q9BYE7 350 aa29.69■■■□□ 2.34
CCDC88B-204ENST00000463837 ZEB1P37275 1124 aaPredicted RBP29.53■■■□□ 2.32
CCDC88B-204ENST00000463837 APLP2Q06481 763 aa29.36■■■□□ 2.29
CCDC88B-204ENST00000463837 CENPBP07199 599 aaPredicted RBP29.28■■■□□ 2.28
CCDC88B-204ENST00000463837 FAM9AQ8IZU1 332 aaPredicted RBP29.27■■■□□ 2.28
CCDC88B-204ENST00000463837 TTBK1Q5TCY1 1321 aaPredicted RBP29.13■■■□□ 2.25
CCDC88B-204ENST00000463837 MYT1Q01538 1121 aa29.06■■■□□ 2.24
CCDC88B-204ENST00000463837 TRIM41Q8WV44 630 aa28.87■■■□□ 2.21
CCDC88B-204ENST00000463837 CCER1Q8TC90 406 aaPredicted RBP28.86■■■□□ 2.21
CCDC88B-204ENST00000463837 ERICH6Q7L0X2 663 aa28.74■■■□□ 2.19
CCDC88B-204ENST00000463837 HRCP23327 699 aa28.71■■■□□ 2.19
CCDC88B-204ENST00000463837 TRIM26Q12899 539 aaPredicted RBP28.6■■■□□ 2.17
CCDC88B-204ENST00000463837 YTHDC1Q96MU7 727 aaKnown RBP28.54■■■□□ 2.16
CCDC88B-204ENST00000463837 RANGAP1P46060 587 aaPredicted RBP28.46■■■□□ 2.15
CCDC88B-204ENST00000463837 NEFLP07196 543 aa28.28■■■□□ 2.12
CCDC88B-204ENST00000463837 UBTFP17480 764 aaKnown RBP28.28■■■□□ 2.12
CCDC88B-204ENST00000463837 PPARGC1BQ86YN6 1023 aaKnown RBP28.23■■■□□ 2.11
CCDC88B-204ENST00000463837 CHIC1Q5VXU3 224 aa28.17■■■□□ 2.1
CCDC88B-204ENST00000463837 ATP1B4Q9UN42 357 aaPredicted RBP28.05■■■□□ 2.08
CCDC88B-204ENST00000463837 LOC105371045A0A1W2PR82 267 aa27.88■■■□□ 2.05
CCDC88B-204ENST00000463837 DIEXFQ68CQ4 756 aaKnown RBP27.56■■■□□ 2
CCDC88B-204ENST00000463837 HNRNPUL2Q1KMD3 747 aaKnown RBP27.48■■□□□ 1.99
CCDC88B-204ENST00000463837 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.45■■□□□ 1.98
CCDC88B-204ENST00000463837 ITGAEP38570 1179 aa27.44■■□□□ 1.98
CCDC88B-204ENST00000463837 DAXXQ9UER7 740 aaPredicted RBP27.31■■□□□ 1.96
CCDC88B-204ENST00000463837 GTF3C3Q9Y5Q9 886 aa27.23■■□□□ 1.95
CCDC88B-204ENST00000463837 MYT1LQ9UL68 1186 aa27.22■■□□□ 1.95
CCDC88B-204ENST00000463837 POLR3GLQ9BT43 218 aa27.21■■□□□ 1.95
CCDC88B-204ENST00000463837 CNGB1Q14028 1251 aaPredicted RBP27.1■■□□□ 1.93
CCDC88B-204ENST00000463837 RTL5Q5HYW3 569 aaPredicted RBP27■■□□□ 1.91
CCDC88B-204ENST00000463837 ACIN1Q9UKV3 1341 aaKnown RBP26.99■■□□□ 1.91
CCDC88B-204ENST00000463837 ZNF316A6NFI3 1004 aaPredicted RBP26.98■■□□□ 1.91
CCDC88B-204ENST00000463837 ABCC9O60706 1549 aa26.96■■□□□ 1.91
CCDC88B-204ENST00000463837 BCANQ96GW7 911 aa26.94■■□□□ 1.9
CCDC88B-204ENST00000463837 DCAF1Q9Y4B6 1507 aa26.93■■□□□ 1.9
CCDC88B-204ENST00000463837 CLSPNQ9HAW4 1339 aa26.79■■□□□ 1.88
CCDC88B-204ENST00000463837 ANP32CO43423 234 aa26.73■■□□□ 1.87
CCDC88B-204ENST00000463837 FAM50AQ14320 339 aaKnown RBP26.7■■□□□ 1.86
CCDC88B-204ENST00000463837 CDK11AQ9UQ88 783 aaPredicted RBP26.69■■□□□ 1.86
CCDC88B-204ENST00000463837 PABPN1Q86U42 306 aaKnown RBP eCLIP26.67■■□□□ 1.86
CCDC88B-204ENST00000463837 NEUROD1Q13562 356 aa26.65■■□□□ 1.86
CCDC88B-204ENST00000463837 CSRNP3Q8WYN3 585 aa26.49■■□□□ 1.83
CCDC88B-204ENST00000463837 TRIM52Q96A61 297 aa26.48■■□□□ 1.83
CCDC88B-204ENST00000463837 ZCCHC6Q5VYS8 1495 aaKnown RBP26.48■■□□□ 1.83
CCDC88B-204ENST00000463837 SLC4A1APQ9BWU0 796 aaKnown RBP26.4■■□□□ 1.82
CCDC88B-204ENST00000463837 ANP32AP39687 249 aaKnown RBP26.22■■□□□ 1.79
CCDC88B-204ENST00000463837 ZNF326Q5BKZ1 582 aaKnown RBP26.21■■□□□ 1.79
CCDC88B-204ENST00000463837 SCAF1Q9H7N4 1312 aaKnown RBP26.21■■□□□ 1.79
CCDC88B-204ENST00000463837 FBLN2P98095 1184 aa26.18■■□□□ 1.78
CCDC88B-204ENST00000463837 FKBP8Q14318 412 aa26.17■■□□□ 1.78
CCDC88B-204ENST00000463837 CCDC180Q9P1Z9 1646 aa26.07■■□□□ 1.76
CCDC88B-204ENST00000463837 NPM2Q86SE8 214 aaKnown RBP26.03■■□□□ 1.76
CCDC88B-204ENST00000463837 MYO15BQ96JP2 1530 aa26■■□□□ 1.75
CCDC88B-204ENST00000463837 TONSLQ96HA7 1378 aa25.99■■□□□ 1.75
CCDC88B-204ENST00000463837 SCRIBQ14160 1630 aa25.96■■□□□ 1.75
CCDC88B-204ENST00000463837 CANXP27824 592 aaKnown RBP25.9■■□□□ 1.74
CCDC88B-204ENST00000463837 EIF5BO60841 1220 aaKnown RBP25.9■■□□□ 1.74
CCDC88B-204ENST00000463837 HNRNPUQ00839 825 aaKnown RBP eCLIP25.89■■□□□ 1.73
CCDC88B-204ENST00000463837 DDX10Q13206 875 aaKnown RBP25.87■■□□□ 1.73
CCDC88B-204ENST00000463837 ZBTB47Q9UFB7 747 aaPredicted RBP25.87■■□□□ 1.73
CCDC88B-204ENST00000463837 MIER1Q8N108 512 aa25.87■■□□□ 1.73
CCDC88B-204ENST00000463837 P3H3Q8IVL6 736 aa25.84■■□□□ 1.73
CCDC88B-204ENST00000463837 EEA1Q15075 1411 aa25.8■■□□□ 1.72
CCDC88B-204ENST00000463837 BCL11AQ9H165 835 aa25.79■■□□□ 1.72
CCDC88B-204ENST00000463837 NBR1Q14596 966 aa25.73■■□□□ 1.71
CCDC88B-204ENST00000463837 FAM9BQ8IZU0 186 aa25.73■■□□□ 1.71
CCDC88B-204ENST00000463837 CLIP1P30622 1438 aa25.71■■□□□ 1.71
CCDC88B-204ENST00000463837 NEFMP07197 916 aa25.67■■□□□ 1.7
CCDC88B-204ENST00000463837 ARID3CA6NKF2 412 aa25.66■■□□□ 1.7
CCDC88B-204ENST00000463837 GOLGA3Q08378 1498 aa25.64■■□□□ 1.7
CCDC88B-204ENST00000463837 CCDC136Q96JN2 1154 aa25.64■■□□□ 1.7
CCDC88B-204ENST00000463837 CEP162Q5TB80 1403 aa25.64■■□□□ 1.7
CCDC88B-204ENST00000463837 ESF1Q9H501 851 aaKnown RBP25.63■■□□□ 1.69
CCDC88B-204ENST00000463837 RSF1Q96T23 1441 aaPredicted RBP25.59■■□□□ 1.69
CCDC88B-204ENST00000463837 ZNF777Q9ULD5 760 aaPredicted RBP25.59■■□□□ 1.69
CCDC88B-204ENST00000463837 UPF2Q9HAU5 1272 aaKnown RBP25.58■■□□□ 1.69
CCDC88B-204ENST00000463837 NPM1P06748 294 aaKnown RBP eCLIP25.57■■□□□ 1.68
CCDC88B-204ENST00000463837 IRX6P78412 446 aaPredicted RBP25.56■■□□□ 1.68
CCDC88B-204ENST00000463837 ANP32BQ92688 251 aaKnown RBP25.55■■□□□ 1.68
CCDC88B-204ENST00000463837 ANP32EQ9BTT0 268 aa25.54■■□□□ 1.68
CCDC88B-204ENST00000463837 SALL2Q9Y467 1007 aaPredicted RBP25.53■■□□□ 1.68
CCDC88B-204ENST00000463837 TNIKQ9UKE5 1360 aa25.53■■□□□ 1.68
CCDC88B-204ENST00000463837 MRS2Q9HD23 443 aa25.52■■□□□ 1.68
CCDC88B-204ENST00000463837 TMC1Q8TDI8 760 aa25.51■■□□□ 1.68
CCDC88B-204ENST00000463837 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.51■■□□□ 1.67
CCDC88B-204ENST00000463837 SLC24A1O60721 1099 aa25.49■■□□□ 1.67
CCDC88B-204ENST00000463837 GLIPR1L2Q4G1C9 344 aa25.48■■□□□ 1.67
CCDC88B-204ENST00000463837 RB1CC1Q8TDY2 1594 aa25.46■■□□□ 1.67
CCDC88B-204ENST00000463837 HSP90AA1P07900 732 aaKnown RBP25.44■■□□□ 1.66
CCDC88B-204ENST00000463837 HIRIP3Q9BW71 556 aaPredicted RBP25.43■■□□□ 1.66
CCDC88B-204ENST00000463837 EIF4G2P78344 907 aaKnown RBP eCLIP25.41■■□□□ 1.66
CCDC88B-204ENST00000463837 MTUS2Q5JR59 1369 aa25.39■■□□□ 1.65
CCDC88B-204ENST00000463837 STAG3Q9UJ98 1225 aa25.38■■□□□ 1.65
CCDC88B-204ENST00000463837 CEP164Q9UPV0 1460 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms