RNA–Protein interactions for RNA: ENST00000430669.6

PTCH1-208, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-208ENST00000430669 KRTAP19-7Q3SYF9 63 aa3.63□□□□□ -1.83
PTCH1-208ENST00000430669 KRTAP4-7Q9BYR0 210 aa3.58□□□□□ -1.84
PTCH1-208ENST00000430669 LCE3EQ5T5B0 92 aa3.56□□□□□ -1.84
PTCH1-208ENST00000430669 MUC2Q02817 5179 aa3.53□□□□□ -1.84
PTCH1-208ENST00000430669 FAT4Q6V0I7 4981 aa3.53□□□□□ -1.85
PTCH1-208ENST00000430669 MT4P47944 62 aa3.52□□□□□ -1.85
PTCH1-208ENST00000430669 LCE1AQ5T7P2 110 aa3.49□□□□□ -1.85
PTCH1-208ENST00000430669 MT3P25713 68 aa3.48□□□□□ -1.85
PTCH1-208ENST00000430669 KRTAP2-3P0C7H8 128 aa3.47□□□□□ -1.85
PTCH1-208ENST00000430669 KRTAP2-4Q9BYR9 128 aa3.47□□□□□ -1.85
PTCH1-208ENST00000430669 KRTAP2-1Q9BYU5 128 aa3.47□□□□□ -1.85
PTCH1-208ENST00000430669 KRTAP9-6A0A140TA67 174 aa3.45□□□□□ -1.86
PTCH1-208ENST00000430669 LOC100996750A0A140TA64 210 aa3.44□□□□□ -1.86
PTCH1-208ENST00000430669 RNF213Q63HN8 5207 aa3.42□□□□□ -1.86
PTCH1-208ENST00000430669 MT1AP04731 61 aa3.42□□□□□ -1.86
PTCH1-208ENST00000430669 LCE5AQ5TCM9 118 aa3.42□□□□□ -1.86
PTCH1-208ENST00000430669 KRTAP4-3Q9BYR4 195 aa3.4□□□□□ -1.86
PTCH1-208ENST00000430669 KRTAP6-3Q3LI67 103 aa3.4□□□□□ -1.87
PTCH1-208ENST00000430669 LCE1BQ5T7P3 118 aa3.36□□□□□ -1.87
PTCH1-208ENST00000430669 LCE1DQ5T752 114 aa3.34□□□□□ -1.87
PTCH1-208ENST00000430669 KRTAP20-1Q3LI63 56 aa3.28□□□□□ -1.88
PTCH1-208ENST00000430669 KRTAP9-6A8MVA2 160 aa3.26□□□□□ -1.89
PTCH1-208ENST00000430669 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.25□□□□□ -1.89
PTCH1-208ENST00000430669 LCE4AQ5TA78 99 aa3.25□□□□□ -1.89
PTCH1-208ENST00000430669 KRTAP9-7A8MTY7 169 aa3.23□□□□□ -1.89
PTCH1-208ENST00000430669 KRTAP9-4Q9BYQ2 154 aa3.2□□□□□ -1.9
PTCH1-208ENST00000430669 PRM1P04553 51 aa3.2□□□□□ -1.9
PTCH1-208ENST00000430669 SYNE2Q8WXH0 6885 aaKnown RBP3.19□□□□□ -1.9
PTCH1-208ENST00000430669 UBR4Q5T4S7 5183 aa3.19□□□□□ -1.9
PTCH1-208ENST00000430669 KRTAP6-1Q3LI64 71 aa3.18□□□□□ -1.9
PTCH1-208ENST00000430669 KRTAP5-9P26371 169 aa3.16□□□□□ -1.9
PTCH1-208ENST00000430669 LCE1CQ5T751 118 aa3.1□□□□□ -1.91
PTCH1-208ENST00000430669 LCE1EQ5T753 118 aa3.1□□□□□ -1.91
PTCH1-208ENST00000430669 LCE1FQ5T754 118 aa3.1□□□□□ -1.91
PTCH1-208ENST00000430669 KRTAP6-2Q3LI66 62 aa3.1□□□□□ -1.91
PTCH1-208ENST00000430669 KRTAP2-2Q9BYT5 123 aa3.09□□□□□ -1.92
PTCH1-208ENST00000430669 FSIP2Q5CZC0 6907 aa3.06□□□□□ -1.92
PTCH1-208ENST00000430669 KRTAP4-9Q9BYQ8 210 aa3.05□□□□□ -1.92
PTCH1-208ENST00000430669 KMT2DO14686 5537 aa3.02□□□□□ -1.93
PTCH1-208ENST00000430669 SSPOA2VEC9 5147 aa2.92□□□□□ -1.94
PTCH1-208ENST00000430669 KRTAP9-9Q9BYP9 154 aa2.85□□□□□ -1.95
PTCH1-208ENST00000430669 USH2AO75445 5202 aa2.83□□□□□ -1.96
PTCH1-208ENST00000430669 FCGBPQ9Y6R7 5405 aaPredicted RBP2.79□□□□□ -1.96
PTCH1-208ENST00000430669 MACF1Q9UPN3 7388 aaKnown RBP2.79□□□□□ -1.96
PTCH1-208ENST00000430669 KRTAP5-5Q701N2 237 aaPredicted RBP2.73□□□□□ -1.97
PTCH1-208ENST00000430669 KRTAP20-2Q3LI61 65 aa2.71□□□□□ -1.97
PTCH1-208ENST00000430669 KRTAP5-4Q6L8H1 288 aa2.7□□□□□ -1.98
PTCH1-208ENST00000430669 NEBP20929 6669 aa2.69□□□□□ -1.98
PTCH1-208ENST00000430669 KRTAP4-6Q9BYQ5 205 aa2.67□□□□□ -1.98
PTCH1-208ENST00000430669 SYNE1Q8NF91 8797 aaKnown RBP2.58□□□□□ -2
PTCH1-208ENST00000430669 MUC12Q9UKN1 5478 aa2.58□□□□□ -2
PTCH1-208ENST00000430669 DSTQ03001 7570 aaKnown RBP2.55□□□□□ -2
PTCH1-208ENST00000430669 MDN1Q9NU22 5596 aa2.53□□□□□ -2
PTCH1-208ENST00000430669 KRTAP4-11Q9BYQ6 195 aa2.41□□□□□ -2.02
PTCH1-208ENST00000430669 OBSCNQ5VST9 7968 aa2.38□□□□□ -2.03
PTCH1-208ENST00000430669 KRTAP5-3Q6L8H2 238 aa2.31□□□□□ -2.04
PTCH1-208ENST00000430669 KRTAP5-2Q701N4 177 aa2.3□□□□□ -2.04
PTCH1-208ENST00000430669 KRTAP4-12Q9BQ66 201 aa2.21□□□□□ -2.06
PTCH1-208ENST00000430669 KRTAP4-2Q9BYR5 136 aa2.21□□□□□ -2.06
PTCH1-208ENST00000430669 KRTAP4-4Q9BYR3 166 aa2.19□□□□□ -2.06
PTCH1-208ENST00000430669 MUC5ACP98088 5654 aa2.06□□□□□ -2.08
PTCH1-208ENST00000430669 KRTAP5-10Q6L8G5 202 aa2.03□□□□□ -2.08
PTCH1-208ENST00000430669 KRTAP5-8O75690 187 aa1.99□□□□□ -2.09
PTCH1-208ENST00000430669 HMCN1Q96RW7 5635 aa1.94□□□□□ -2.1
PTCH1-208ENST00000430669 KRTAP5-11Q6L8G4 156 aa1.94□□□□□ -2.1
PTCH1-208ENST00000430669 KRTAP5-1Q6L8H4 278 aa1.91□□□□□ -2.1
PTCH1-208ENST00000430669 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.9□□□□□ -2.1
PTCH1-208ENST00000430669 PHGR1C9JFL3 82 aa1.88□□□□□ -2.11
PTCH1-208ENST00000430669 MUC19Q7Z5P9 8384 aa1.88□□□□□ -2.11
PTCH1-208ENST00000430669 MUC5BQ9HC84 5762 aaPredicted RBP1.87□□□□□ -2.11
PTCH1-208ENST00000430669 KRTAP21-2Q3LI59 83 aa1.81□□□□□ -2.12
PTCH1-208ENST00000430669 AHNAK2Q8IVF2 5795 aa1.8□□□□□ -2.12
PTCH1-208ENST00000430669 GPR98Q8WXG9 6306 aa1.77□□□□□ -2.13
PTCH1-208ENST00000430669 KRTAP5-7Q6L8G8 165 aa1.77□□□□□ -2.13
PTCH1-208ENST00000430669 KRTAP21-1Q3LI58 79 aa1.56□□□□□ -2.16
PTCH1-208ENST00000430669 AHNAKQ09666 5890 aaKnown RBP1.51□□□□□ -2.17
PTCH1-208ENST00000430669 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 5.4 ms